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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005279 ID=TCONS_00005279|Name=TCONS_00005279|organism=Clytia hemisphaerica|type=transcript|length=3297bpRun BLAST on NCBI transcript from alignment at sc0000052:247757..267647+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005279 ID=TCONS_00005279|Name=TCONS_00005279|organism=Clytia hemisphaerica|type=transcript|length=19891bp|location=Sequence derived from alignment at sc0000052:247757..267647+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005279 vs. Swiss-Prot (Human)
Match: SMBT2 (Scm-like with four MBT domains protein 2 OS=Homo sapiens GN=SFMBT2 PE=1 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 1.378e-87 Identity = 168/467 (35.97%), Postives = 253/467 (54.18%), Query Frame = 3
Query: 267 VDNGEQPVLSEEIFEWPLYLASTGSAGVKKELFQHIVPECMCGFESGMKLEVPNKDYKNTYWLATIIAKATPLILVRYEGFKESNNADFWCNTLTDDIHPVGWCARTKHALKPPKAIQDQETNWYAYLIKNLTGTRKASESLF---LKKSHPVHYLRAGHYVEVIDLYNPTCYWLARIVEIFAGRLSLQYEGYEDKQA-EFWCYYLDERLRPVGHGLKNALTLYPP-KVTPTISHGQFKRITEKLITLSRRSDNAVFKSLFQGWKQKEEHNLRLGMKLEAINPQNPSEICVATVTRIFDPFYFLVKIDNLISVQEDVTTDSFVARKGQAGIFPVGYCFKNGVHLQQPKGFNGK-FTWDGYLKYTKTEAVSDSFFPELKAPEDFMEGMKLEAVDPDHNSNICVATIRRVVGGHLWLHIDG--DTRGEMIYAYNSFNIFPVGWCEETGHELQWPRPETLEQKNRISSLR 1643
+D+ E L E F W YL TG++ F+H+ F+ GMKLEV NK+ +TYW+ATII L+L+RY G+ E ADFWC+ + D+HPVGWC + L PP AI+++ T+W +LI++LTG+R A +L L+ P+ + G +E+ D NP YW+ ++E GRL L+Y G ED ++ + W +YLD RLRPVG +N + PP ++ P ++K EK +L + + +F+ H +GMKLE +N P I A+VT++F+ +F V ID+L + + + S + GI PV +C KNGV L PKG++G+ F W Y K + F F + MKLEAV+P + +CVA++ V G +WLH++G E+I S +IFPVGWCE + L P ++K +I+ ++
Sbjct: 31 LDSEEGSSLEETGFNWGEYLEETGASAAPHTSFKHVEISIQSNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVVIADLHPVGWCTQNNKVLMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEK--SLIDAAKFPLPMEVFKDHADLRSHFFTVGMKLETVNMCEPFYISPASVTKVFNNHFFQVTIDDL---RPEPSKLSMLCHADSLGILPVQWCLKNGVSLTPPKGYSGQDFDWADYHKQHGAQEAPPFCFRNTSFSRGFTKNMKLEAVNPRNPGELCVASVVSVKGRLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAVVQ 492 The following BLAST results are available for this feature:
BLAST of TCONS_00005279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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