TCONS_00005278 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005278
Unique Name	TCONS_00005278
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2513

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000052:226375..245513+

transcript sequence

>TCONS_00005278 ID=TCONS_00005278|Name=TCONS_00005278|organism=Clytia hemisphaerica|type=transcript|length=2513bp
CCAGTAAAATAATAAAAccgaaaaaacaataaaaatgtcAATATACAATC
catcacaacaacaacaacaaccctATGGTCAACCGCCACCTGGTCAGCAG
CAAGCACCCTACCCTGGAAGTGGTGGTGGCGGTCAAGCTCCCTACCCTGG
ACAACAAGCAGTACCTGGTCAACAGATGGGCTACCAACAGCCTGGTCCAG
GTCAACCTCCACCACAACAGACCCAAATGCAAATGAATTACAGACCACAC
GTTCAGCCTGTTGGACCTCCATTATCCAAAATTGAAATCACAATCGCTTG
CAAGAACCTGTTAGATCTCGATGTCTTTTCCAAATCTGATCCGTTTGTCA
TCGTTTCCATGATGCAAGGACAATGGGTCAAGATTGGTCAAACGGAGGTG
ATGAAGAATGAATTAAATCCAACTTTCGTCAAATCTTTCACTGTCGATTA
TTATTTTGAAGAACAACAAATGATCAAGTTTGAAGTTTATGATGAAGATA
GCTCCTCCAATAACGTCAAAAATCACgaCTTTCTGGgatgttttgtgacg
tcattaggTTCGATTGTTGGAGAACATGGCGGAAAAGTTGAACACCCTTT
ACAGAATACAAATTACAAGAAGAAAAGTGCCGGTACCATTATCATTCGAA
GCGAGGAAGTTGGAAACAGCACTGATGAACTTCTCATTTCACTATGTGGC
AAGAACTTAGACAAGAAAGATTTCTTCGGCAAATCTGATCCATATCTAGT
ATTTGAGAAATGCAACGAAGACAACTCCTTCACCAAAGTGCACAAAACCG
AAATCATTACACAGAATTTGAATCCTGCATGGAAACCCTTTCGTATTGCA
GTTCGTACACTTTGTAATGGTGATCTTCAAAGAACAATTCGAGTCTCGTG
CTTTGATTGGGATAACGATGGAAGTTCTGACTTCATCGGTAGTTTTGAAA
CCTCAGCAAAAGAACTCATTGATTACAAAGCCAACAATAGATACACTTAC
GAGCTTATCAATGCCAAGAAGAAAGCTAAAagcaaaaagtataaaaactC
AGGAACGATACATCTTGAGCAATGTACAGTGGAAAAGAAACCTTCGTTCG
TCGAGTTGATGTCCAAAGGAATCGAATTGAATTTCATAGTGGCCATCGAC
TTCACTGCGTCGAACGGCGAACCAAACAGACCAGACTCTTTACATTATAA
CACGCAAAACCAACCAAGTCAATACGTACAAGCTCTCGATGCGATCGGTG
GCGTGTTAGAAGACTATGACACgGATAAACTTTTCCCTGCGTACGGTTTC
GGCGCCAAAATACCACCTTCTCAAACGGTGTTGCATGATTTTGCACTGAA
TTTCAATCCACAAAATCCATTTTGTCAAGGCGTTCAAAACATCATTGGGG
CGTACTATCATTCAATCAGAAGTGTCCAACTCTATGGTCCAACGAATTTC
TCACCGGTCATCAACAACACGATACGAATCGCTCAACAAAATCCACAAGG
AAAACAATATTTCGTGTTGATGATCTTGACAGATGGAATTATCACAGACA
TGAATCAAACGAAGGAAGCCATCGTCAATGCTGCCAACCTTCCTATCTCC
ATCATCATCGTAGGAGTGGGAAATGCTGACTTCTCAGCAATGGATCAGCT
GGATGGTGATGACGTCAGAGTATCGTCTAACGGAAGAAGTGCTGCAAGAG
ATATTGTCCAGtttgtaCCATTTCGTGATTACTTGACACAGAATCGTTAC
GACCCAGCGAACGGGGTTCGTTTGGCGCAAAATGTTTTACACGAACTTCC
ATCACAATTAGTAGAATATTATATTAAACATCCACCAAATTTGTGATTGG
AATAACATTTAGTATTCTTTAATGACAGATACTCTATGTATAAAGTAAAG
CGAGTCGACATATATGGATGACTTTGTTGTAGAATTGGACGAAATCGCAC
ACAAAGGAAGAGACAATGCACCAACACCATCTTCGTTCAAAATAggaaat
atgattcttcatgggCCCGTTGCTCTTTTGCAGCCTGCCTTAAAGTCAAA
AGACTGTTTTTATCCAATCAAACTGCTAGTTGAAGTTGGTATAAACAAGA
ACTGCACATGAATAACTTGAAAGCGTGTAGTACTAACTCAAATAAGATGT
AGATACTCTGTTATGATTTAtaattaaatgtttttgtaGGGGATGCAGTA
GAGGATAGGCTGTAGATTTGGTTTCTGTTAGGTCATCAAAGCAATAAACA
ACCAGAATGATAAAATACTCACATATTTGTATATAAGTAATATGTAATAA
ATCATTATTTGGTATATATGTATCATGTCGTagtagattttattaaaact
ctCTCAGCTCATTTTCCTTTGCGGAGACAACTGTTTCTTATTAGTTGGGa
cgatcttaatttttttacatctttttattgaaatataaaTTATTTATGAT
AATAACAATACCAAATCCTTCATATTGACTGACCAAGGAAAGAAAACCTT
CGACGCAGCCCAA

Run BLAST on NCBI

transcript from alignment at sc0000052:226375..245513+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005278 ID=TCONS_00005278|Name=TCONS_00005278|organism=Clytia hemisphaerica|type=transcript|length=19139bp|location=Sequence derived from alignment at sc0000052:226375..245513+ (Clytia hemisphaerica)
CCAGTAAAATAATAAAAccgaaaaaacaataaaaatgtcAATATACAATC
catcacaacaacaacaacaaccctATGGTCAACCGCCACCTGGTCAGCAG
CAAGCACCCTACCCTGGAAGTGGTGGTGGTGGTCAGGCTCCCTACCCTGG
AGGAGGTGGTGGCGGTCAAGCTCCCTACCCTGGACAACAAGCAGTACCTG
GTCAACAGATGGGCTACCAACAGCCTGGTCCAGGTCAACCTCCACCACAA
CAGACCCAAATGCAAATGAATTACAGACCACACGTTCAGCCTGTTGGACC
TCCATTATCCAAAATTGAAATCACAATCGCTTGCAAGTAGGGAGTGTTTC
ATTTGCTCTAGTAGAATAATTCAGTGATGAAAGTTCTGGCGTCTCAGCGA
AGTATATAAAGAAAGCTTTTCCCTTTCAAAACTCTTCAcaattcaacaaa
atttcaagACCTTGCTTTGATCACTGAATAATGAACACAATAATTTCTTT
TCGATTTTTAGCTCAGGAGAGCTAACAAGTTCTCATACTCAAGTTTGAAC
TTCTTGACAATATAATTAGTGTTAATCCTAGAGCAGCTGATGATGTTTTA
GCGCTTTAATTTGTTATGTTATGGGTGTTTCACCATTTTGTGTTTCAGGA
ACCTGTTAGATCTCGATGTCTTTTCCAAATCTGATCCGTGTAAGTTTTTG
TATAGTATATTCACACTTTCATTTCACAGTTTCATTGaggatttctttta
ttttgcatgTCGCGTCAAAATTTGACCCTCTTTAAATTCCATTTAATGTT
TTTGTTGCAGTTGTCATCGTTTCCATGATGCAAGGACAATGGGTCAAGGT
GAGATTGAAGATGTTTTAAATCTTTACGGCTACGGCTAAAGAGGagaggg
aaatggcgagtaaggcaagtaatggcgggtgaaagcaagttcgatatttg
acgtacggcattatgtcgactttgcttatacggtgttttggtgtttttCC
CGTACAGAGCAAAGTAGACAACGACATGTCGCCTTTGGTGACGACCCATA
cgggcagccccgcaaccgtagccgtagaatatctccgatacataatctcg
ctttTCCTTTTATTTATCCTCGCAGTGCTAATATGTAATCAAGATTTCCC
CGCGTCCAACATGAACCCATTATTTGGGCGAGGTCAGTATTGATCACCAA
TGACCCGAAAACGATGGTCTTTGGATTGCTTGAGATTGTGAATCTCCCCT
ATAATATCATTAAAAAATCTATTCTTTTGCGTTGAGTTGAACTGAAACAA
TTTACCTTTTTTGcagtgaaattttgaattgcatAATAGCCGGCGGAATA
ACCTGGTGGAATATATTTATAAAATCCAGAGCCAAAAACCATTATACAGA
AGAATTTGGGCAAAAGAAGTAACTTAAATGTTAATGTAAAAACCTTCCGA
AATTTTAAGTATGTATAGGTGAAGGAAATCAATGATAGGGTTGGGAACTA
AGATTcttgacattttctttctctctcAGATTGGTCAAACGGAGGTGATG
AAGAATGAATTAAATCCAACTTTCGTCAAATCTTTCACTGTCGATTATTA
TTTTGAAGAACAACAAATGATCAAGTTTGAAGTTTATGATGAAGATAGCT
CCTCCAATAACGTCAAAAATCACGTTCGTCCATTCACTTTTTACttctag
tagggggaaatttgtaaaatcgctcgatttttttagtcaaagtacttttt
atatatttttggaaagctaaggggtaggggaatcaaaaaaACTTGGGTGC
CAAATTGTTTTCGGACACTtcggtgtgattttcggacaaatacgacggtc
tcaggcaaatatcatagggtgaaaaattaatgaaaattttagcttgagaa
aacggagacctgttgtttatttttggaaagctctcaaaaagttaagatta
gtgatatattgcgagtataggtgatttcggtacctaactcgagatattga
gcttccaaaagcgcaaaaactggacaaaacagctgtttctggctgaaaaa
cactgaaaacactgttataacaagtgctttgactaaaaaaatcgagagat
ctaaaaaaaacgaacagatttccccctactattcaaacttcaaagatatt
ttttaagaaaacagcTATAAACAGATTTTAGCTCCAAATATCCTCGATGC
TGGGAAAACAATTTCTGGAAAACAAGAGGTTGTCGGTTTAAACTCcattt
taaagggacataaaagtactgacgaaatttgtaaacaaaccgtatgcagt
ggaatacaaaatataaacaaatgtcacaaaatgtcaaaataattaatgat
ttttattgcttcaattgttttacaagtttgttttggacacgtgattttaa
ttgttcacgtggttcgcgcaatgttttacattttactatttttatgtccc
tttaaagaacTGAAAAAAGTAAATCAGGGTGTGGAAACTGTCGATTGGTA
TAAACCGTATACACAATTGTATCATTCTAAGTTTCCCTTTTCTTCCCTTT
ATTGGACTGCTCAAAAAGGTTCTGATCAAGCTGTGAATGAAGATTAAACT
CGAGGCACGAAAGCAAAAGTTTATATATTATAAAACTTATTTTctacgtt
tttttgtttttttgattttttaggaCTTTCTGGgatgttttgtgacgtca
ttaggTTCGATTGTTGGAGAACATGGCGGAAAAGTTGAACACCCTTTACA
GTGAGTTGGCCTACTCTTAAAATCTTCGGTTTTCTTAGTTACGATTTTCT
GGACACCCTTTCTGAATTCTTATACCTCTAAACTTAACGAAACGTCACTC
TCATCCCGTACTTCTTCGTTTTCAGAACACCCAGCACAAAGGACAAAGAA
AGGTCAGTCCTCATTCACTTTCTGCATGTTTTTAGTTAAGTGTAACAAGG
GTGTCCAGACGATTTAGTTTTCAATTAGATGCATGTTATCTGGGCACCCA
CGATGAACCTCATTTTTATTCGATTATatatttgttgattttgaaCCAAA
GCTTTCACTTTTGTTGTCTTCAGGAATACAAATTACAAGAAGAAAAGTGC
CGGTACCATTATCAGTAAGTGAAGCTTTGTATTATGCTATGCAtcagaaa
atcaagttttgtttcgtaaatctgaccatattttccCAGAAAATGGATTN
gagaaaaatcaagttttattACCCGAAGGGAGGGGGCTTTCAAGGTAAAT
GAACTATCATACGTgtggcccttaagggtatattttccaagcttcctaaa
gtgcactgtaagggtcgaaatcagtaaagatgagaaaaattgcactcaaa
GGGTGTAAGATTTCGAAAATCAGACCatattttatcagaaaatgattaaa
ggttttcaagaaaatgcttAAAGGAAATGATTAaaggttttcaagaaaat
gctcaaattttctctgcactgtaagggtcccaTTTCAAAAGCCTAATTTT
TGGCCGTTCATGGTCGTTTTtcaatcgagtgcccccccccccccccccCG
GGGTTTCGTTAAAAGGAATtacattttgtttcattttatttacTGTATTA
AACTGGCAAAGTAAATGTTCGTCCACCTATCCTCATTTTTACCTATCCTC
ATCTTTAGTTCGAAGCGAGGAAGTTGGAAACAGCACTGTAAGTTTTGTTT
GTATCAAATGAAGTATGAATGGTATTGATACCTAATAATTATTAATAATT
ACTAATATTTATAGCTCTTAATTCATACactatttcaaaaatgaaatctg
TCAGatctaaatcttttctttaaGTTCCTAGATATCTATATATGTAAGGA
TCGGTATATCAGAAACTAGTTCCAAAATATAGTTCTATCATCAGTAGATA
GGCTCTAACAGACCACAATTCGATTCTACTGACGACAGTAATTTCCTCTT
TCTTTAGGATGAACTTCTCATTTCACTATGTGGCAAGAACTTAGACAAGA
AAGATTTCTTCGGCAAATCTGATCCATATCTAGTATTTGAGAAATGCAAC
GAAGACAACTCGTAAGAATTCAAACTTTCTCATAAACATTATTTCGTTCC
AATGGTCTCAGTTTCCTTACTTTTTACGTCAATTTTAAGTCGTCGTATGG
TAGAAAATATCAATGCCCATCACCACaaatgtcccgtgtggtctagtggt
taggatttctgatCACCCAGGCagtcggggttcgattccccgcacgggag
tacCACTtttttcatgttgcgaataaaacaGATCTCGCACAAATATTATC
CTGTAACTATTACATACTATCAATTAGCAACCATTGATTATAAATGACTC
CAGTCTACCATTTGTAGCTGCTTAAGCTCTGACACATTGTTTTTCCCTTT
TCAGCTTCACCAAAGTGCACAAAACCGAAATCATTACACAGAATTTGAAT
CCTGCATGGAAACCCTTTCGTATTGCAGTTCGTACACTTTGTAATGGTGA
TCTTCAAAGGTGAGCCACTCACTAATCAAGTATTGATAGGTTTCAGGTCT
AGTTTTTCGCTAGGTATGTAATAAGATGTAGTTGATACACTGTATGACTC
TATATTACCTATGGAAGTTCTTGGATAAAGATTCCCCGTGGATGGTTTTG
TGTTTCCCCCATTGGGCACATTGGGCAGATAAGGTTAAAGAAAATTCGAA
GGATAATTCATTCACAGTAGGTTACACCAATTAGCTGCtggtgttttgat
attttttggacctaccccggtggggtggaggtcctataaatgaacccatg
ttcgttagttagtgtgttaccagcttttctcgagattggctcattagttt
tttctgatttttggcacaaaggtgcatgaccataaaccctcgaatgtgac
ggagctcgattttcgaaaaaaaaaatttttgggcaaatttgggccaaaaa
acggcttaaaatcgggttttttggactttgtgaaaaattggatcattaaa
tttttctgattttttagcatgaaagtagggtacaatcataggtaaaagat
ggctcaagcagaattttgcaaaaaaattttttttgactcaaaaatcgcat
ttttatctataagaaccgcttttaataagaatacatcaatgttcttagcc
atattattattattatttttattagtttttNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGAATCTCATTGGCTTTCCACTTTT
TCAAAGATCCAGGCTATTTATTATCAAAGATTCAGGCTATTTAATTCCGT
ATTCTAATTCAAAGTTGATAAATTTCAGAGTTTAAATccgaatcttgtgt
tctctgtgttcttgtgtccgattttatcaattgcagaattcccaaatcca
aatcttgtgttctctgtgttcttgtgtccgattttatcaattacagaatt
cccaaatccaaatcttgtgttctctgtgttcttgtgTCCGATTttacggt
tagtgtaaaacgcaggtcacaggtcacgggtcacaggtcacaggtcagtg
ttgacaggtcagcttcaagtactgtaaaacacaaagaaaatttttgaaaa
acagttgttaatgtgaaaaatataattccaaaggtattttatttcgcgtt
ttatgccgtgtatataacacggacctgtaatacttgtattatatattaca
cctAAATCAAACatgtaataaaatcttttcaatgttatatgcATGTTACG
TATGTTAATACAAAGAATACGTATTAAAAAACATTGATCTCACCTTTTGC
TTTAAACTGccccctaacaggaaaatagctattacacaatcactatgtca
tatctcattttaattcatgcatcaccttgggtatggcaacaagaattgat
gagaaTAGTATCAATGGGATTatacagtgtagacctaaagctctaaacca
gcatctaataacatgaaaaccagaatatgattcttcaatgggaatcaaaa
ctataaagtgcacttacaaaCATCAATTTGTCAGATCTAACAAAATTAAT
AACTGCCTTTTCGGGACTTTGgtttaagtgcttgagtgcagcatagggta
caaagtccaaatatgcgtttcccgtaatttttgtgtgaagagttaggtct
acactgttatattttataaatctttcaatatttttatctcctgctttgta
tttttgataaaatgacgtcactattttcatatctctaaaacagctctctt
ggagtatttaatgttttcaaaacctgtcaatatATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgg
acacaagaacacagagaacacaagatttagtcttactattttagaattta
tttttcccatcacggtggacacaagaacacggagaacacaagtttcagtc
ttactatttcagaatttatttttcctatcttggggacacaagaacacaga
gaacacaagattcagccttactattttagaatttatttttcctatcgtgg
tggacacaagaacacggagaacacaagattcagccttactattttagaat
ttatttttcccatcgtggtggacacaagaacacggagaacacaagattca
gcctTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTATGTCAAGCCTGATGATGAATCTAGCCCGTGAACATTTTTAGCCT
GAATGACCAGTTCTTtatcagccaatcagattgcttctTTACTTACTTCA
CCTTAACCcgagttttctgtaaacacttattatttttttggctgaaaaac
gaatctttatctataagaatcactatttatgaacatagatcaatgttatt
agccaaattgtttttttattattatcttttctaacagaagaaaatgtcac
ggtagagtgcgacGGTTTCAGtcttctggaaaccttatttattaagctgt
gcatttttcggatagtggtttttataaagaaaagcgcttaatagcttttt
tctttctttttcaaaaatctttttcaatagtgttgatagtttctctcaat
agatatgctttcattttctttatttttttgtattttgaccagttatgtct
tatgtgtttcattgtttcaatattcactgattagtttgataaccaggtag
gtccataaaagtatcgcttgttctTTTCTAGAACAATTCGAGTCTCGTGC
TTTGATTGGGATAACGATGGAAGGTAATTTAAGTTTTTACAGTAGTGATA
TTTATTAAGCTCTTTAAATCTGCCATTTCAATGTATTAAATGTTTTACTA
TCGAGACAGATCGGGGGAAAGAGTAGACTGACACGCCAGTCGGAATTGCA
TGATATCACGCGGGAAAGTGAGCGTAAGAGTTAAGTAAGCGTAGAAAGAA
CATTTGTCGGTAGGAGGAGTTTTGTTACGTNTAGCGTAAAAGTTAAGTAA
GCGTAGAAAGAACATTTGTCGGTGGGAGGAGTTTTGTTACGTAGCTTCTA
CTGTTGCATATGCCCGCCGCCCTTATGCTCCCGCCCTCAAACATGATAAA
TTAACAGGCTGTTAGTCAAGGGAATGAGTCTAgcattgtctttctttttt
ccAGTTCTGACTTCATCGGTAGTTTTGAAACCTCAGCAAAAGAACTCATT
GATTACAAAGCCAACAATAGATACACTTACGAGgttggtattttttattt
ttttgacgaaattttcttcaatttaaATGATTAGGAcctatttaaaaatt
ttatttaaattgtTGGATATATGGATGTGTACCTTATTACAATTATACAA
CTACTCGAGTATTTAACGCGGGTAAAAAGAGTGAAAGGAAAGGcagtgtt
tttgaaaattaccgtgGCACAGATTTTGTTAAACTGTTTTAAATAGCACG
AGTGTTAGCATTTGTGTTTAAAACATCACAAGTTAGTTTTACGAATTTTC
ACCATAATTATTAGGCGAATCAAAGACCTTATTTGATACCGTAGTCTTGA
TGGCTTGAGTGTTTTTCCGGTAACATTTCAATATATCACTTGGTTTTGTG
TACGCacattcgaaaatttgaaattttggaggGCTTATTTATAATGGTCG
GTTTTATGGTAATTCCCTTTCCGATTTTAGCTTATCAATGCCAAGAAGAA
AGCTAAAagcaaaaagtataaaaactCAGGAACGGTGAGTTTCATTATAA
CGTTATTGGTTGCACAAAAACATCTTTCAGGAAGCCAAATTTTCCCATCA
GTAACCTGGGTAGAATACTTCAACCAGTGGAGGTGAAATGGAGCGGCTAA
GTAAGTCAGTCTGCGACTGCAATCAGAGGCCATTCGAAGGCTCTGCTTTC
AATAGCTATCTATCCAAAAGTAGGGTTTTAggtttctccctggattgctc
cacttacccttgatctaTTCCTTAATTGCTGAGTATCGTTGAAAGGCATC
GAGTACCATTCTTTTACTAAGTGTTatgtctttggtatgacccggctgaa
GATTGAACCATAGCCGGATGTTCAAcgactgcactacggtcgctgacGAT
GATAAAATCATGTGCCTTAGATGGGCGATTCAAATTCAGAttcaaattta
ataatttaCAGCTCACAAATTATAGGTATATAAATATAATTATAGGGTCT
GGTGAAACAGAAGTTTTTTCTGTATTGAACACGTGTGACAGAGAACATTC
TATCTACACAAAGCTAACTttgattgtttattttgtaGATACATCTTGAG
CAATGTACAGTGGAAAAGAAACCTTCGTTCGTCGAGTTGATGTCCAAAGG
GTAAGTTACTTTGgggtttgtttaatttttaaatctaCCAAGTAAAGACT
CCATTGGTGTGAATTAATTACCAACAGCAGGTCATGGAGTCAGTCACATT
AAAACTGCTTTCCATGTGGAAAACTGCTTGGTTTTTAGGCTGGGACCCAT
GGGGACGTTTCCCTTGTCTTTTTGTCCTACGGGAAATTAGTTTTTCaaac
caagtttttctttgagaatgtcaaaaataaattcagcCCCTTGAGATTTA
ACCTGAAAATGTTGCCGAGattattttgagcattttgtGATTATTTGATT
TTAGAATCGAATTGAATTTCATAGTGGCCATCGACTTCACTGCGTCGAAC
GGTAAGTGACAATCAATTATAATTCGTTGATTAATGAGATCGATTTCCGA
TCTTAATTGAAAATAGTGGTCGCTGTTTTCTTAATTAGCCTTctattgtg
atttttttaaatgctgGCACAAGAGTTAACCTTGAAATTGAGTCTCCTAT
TCctgaatatcaaaaataaatgaaTGTAAAACTTATTATCAAAAGAGTAA
ACTAAACGGATCTGCTTTTAGGAATACTGAAAGGCCTTTATAAtcaactt
tttggacctaccccggtggaggtcctataaattaacctgtgtttgttcgt
tcgtccgttcgttcgtctgttaccaacttttctcaggattgaatcatagg
aatcttttgatttttggtacaaaggtgcaaaatggcaGTGTGGTAAATTT
AGGCCAAAACACGGCttgactttgtgaaaaattggattattaattttttc
tgattttttgcatgaaagtcgggtaccatcatagataaaagatggctcaa
gcagatttcagcaaaaaaaattatttggcttaaaaaacgcatgtttatct
ataagaatcactattaataagcatacatcaatgttcttcgtcaaattact
caattttttatgagatagaatATTGAAGAATAAAattgtttagacaggaa
attttggttgcttggcgtgtctttataaaaaaactggccaaattgaGGGA
ATTACATGAATACGAATTCGATGATTATAAAATTGCTAGTCAAGTTAACT
TAGATACAGATCAAGGGCGTGACGTTGTCATACTTGTTCACACCTCGATA
AAACATTTAGTAGCCGATGTCAAACCTCCAATCACTTCCAACGAAGTATG
CATGATTGAAGTACAATTATCTGGAAAAGATTTGCTTGTTGTCGCGTGCA
TCTACCGAAGTCCGAGCAGTTCTACATCATCAAACGGAAATAACAGCAAC
CTGAATTGTCTGATCAACACGTTGACGAGCCAACTCGATGTCGTGAAACA
GATGACCCATCTCTAATCGACCTGATATTgacagaagaagaaaatcaaat
agTGAATCTAGATTACTTAAGTCCACTTGGTAAAAGTGATCATAGCTCGT
TAGCCTTCAAATTTGCTTGTTACGCTCACCCCAAAAGTGTACAGACAAGA
TATATCTTTGCGTCGGCCAATTTCCAATCGATGAATAACGACTGGAAACA
AGGTTTCAAGAACGCGTCCATAATGTTGGTAGAATTGGTCTACCACGTAG
CCGAGCCTTTGGCGATCATAATGAATAAAACCTTGTCGTGTGGAATCATA
CCGAAGATGGCTTACGTTTCACCAATTTACAAGAACAAGGGTGCTCAAAA
TCTAGCAATAAACTATAGACCAGTCAGCCTGACATCAGTTGTTTGTAAAT
TGATGGAATCATTTCTTAGGAAGCATATCACGAATCATTTACAAGATCGA
AAGCTATTGTCAAATAAACAATACGGCTTCATCAGTCACCGATCAACAGT
TACTCAACTCCTGAACTACTTGGATAAGTGCTGCGAAAGCATTGCTAATG
GTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCAT
TGCTAATGGTAAAGTAGTTGATACGatatatttcgattttgctaAAGCCT
TCGATACTGTTCCCTACCGTCGCTCGCTGAAGAAACTTGAAGGATATGGA
ATATCAGGTAACTGTCTACGATGGATAGAGTCTTTCTTGACAGACAGAAA
GCAACTCGTAAAAGTCGATCAAGTACAAACTCCGTTGTAAGtggtattcc
tcaaggaagtgTCCTTGGAGCACTTCTCTTTGTTATCAATATCAATGACC
TCTCGGAAAACGTCATCTCATCATTTTCCTATTTGCCGATGATACGAAGA
TAGTCAAAGAGATCAACTCAATCGAGGATTCTTTGAAAATCCAACAGGAC
ATCAATGAACTGGAAAATTGGTCGAGaaaatggcttttaaaattcCATCC
AGATAAATGCCATGTACTTACTCTCGGGAAATTTGAGAACATCATCCATG
CACACCCATACTCGTTAGATGGAAACCAACTTGAacacgtttcccttgaa
aaggaTCTAGGTGTGCTGATCGACTCCGATATTACCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTTTGAA
GAGCACATATCGAAACAGGTCAAGAAAGCAAACTCAATTCTCGGTGTGAT
CAGAAGAGGCTTCGAGGAATTATGTCCCAGGACATTTTACAAACTATATA
CCACCTTTGTTCGACCTCATCTGGAATATGCTCAATCTCTATGGTCACCT
AGATTGCGTAAGCACGTCAACCTACTTGAAGGGGTTCAAAGGCGTGCGAC
AAGAATGGTACGTCGTCTACGAAATTTAACCTACGAGCAGCGCCTGCGAA
AACTGGACTTACCATCTCTTGAATTTAGGAGACTATTTGGCGACATGGTT
CAAATATACAAACATCTTCACTTCTATGACAAAAATACcatcgtcaaaaa
gttttctcgcCGAGCTCGTCCCCATCGTAAACATGATTACGACTTGATCC
CTAATTTCTCAGATGATGGATTAAGGGGTgtgcaaacaaaatcattttat
taCAGATGCATACCGGCGTGGAACCAGCTcccaaaaaatattgttaatgC
TAAGTTAATCAAAGCATTTAAAGAAGAACTTACTCAGGCATGGATAAAGT
ACCCGTTACGTTACGATTCAAGATCACTTTTGTAATTGTAGATAgaccgg
tttagaggccctagtGTGCCTGGAATGTATATcctttaataaaataaaat
aaataaataaattcgatatttttttataagcacattatcaattacttagg
tattagcttttctcgagattggctctttcattctttatgattttttgcac
aaaaatgcataactataaaccctcgaatgtgacggatttcgatttttgga
aaaaaacttttgggGTAATAAAcagctaaaaaagggttttttggactttg
tgaaatattggatcattgattctttgcatgaaagtaggtaaaagatggct
caagcagatttttgtaaaaaaataatttttcagctcaaaaaacacatttt
tatatataagaatcactattaataagcatacatcaatgttcttagccaaa
ttactcaatttttttatgaaatagatgtttgtttttgctcacgaagtctt
gaatatgaaagaatatttcaagagcatgaaattttggtttctaaacgttt
ttttttttacaagaaacaaacgactaattttaatagatcgtcattatttg
tgttctgaatgattgtttaatggtcacgtcacgtagatatcaattataaa
tgcgTTAAATGCATAAcaaggtaggtccataaaagtatcacttgttaaac
TTTCATTgagcaatttcaatttcaatctcCCATCATTTGCTTgatacaca
gcatttttaaacaaaaaaagataaaccCCTCCTATGCCGCGCgagcacaa
attttgagaaattgttttgtttaatCTGCTTTGTCAAAGCTGTCTGTCTG
TCTTTCTACATCATATTTGAGTCTCCATACCTAGAAATTACGAGATATAG
AGTAAGGATTATAAGGCAttattaactgaagggaccagcaAACTTGTTCG
AGATGAGAATTAATATATTTAAATAGCAATGAATTAAATTTACCATTCTT
TCAGGCGAACCAAACAGACCAGACTCTTTACATTATAACACGCAAAACCA
ACCAAGTCAATACGTACAAGCTCTCGATGCGATCGGTGGCGTGTTAGAAG
ACTATGACACGTAAGAACGTCTTCCTGCTTGTTCTAAACGTCATAACAAC
GTTCGTCCGACGTCCCTAACGTTACTATAACGTTTAATGAGACGTTAAGA
ATAACGTTGCTTTTTTAATAAACTTTCTTTTTCCTTCCTATTTTGTTTTA
GCAGTTTTAATGAGATATATTccttatacagtggagtctccataactcga
acacgcgcGGGGAAACGGACatctgttcgagttaagaaattTCGAGATAT
GGAGACTGGTTtctaaggcattgttaacttaaGAAACCAAACTTGTTCGG
GAGTTAAGGACTCATTTGAGTTATTGAGGTTCGAGTTGAAAAGGTTCCTC
TGTAATGTAACTAATTACATTATAACTGCTCTTCATTGATatataataat
gtttttgatttgttttaggGATAAACTTTTCCCTGCGTACGGTTTCGGCG
CCAAAATACCACCTTCTCAAACGGTGTTGCATGATTTTGCACTGGTAAGT
GACTTTTTCATATGACTCTTTTATTAATCTGATTATTGTTCACAAATACG
TAAAAAAGGTTGTACCAAATCAATGGTGTTAAAAAGTTCACCAGTCTCTT
CCGTCTAAGTGAAatatataaaatgttttttccaaTTCAAAATTCTGCAT
ATTCAATCCAAAGTTCAAGATGCTCCCTGAAGCTCCTTACTTTTAGTGAA
GCGAGTGTTTAGTCACTTTAATCGAGTAATCAAATCTTTTGGTCACTTTG
CTTCGGAAACGGGAATTCATGACTTATCCCATTCAAATCATTGATGGATT
CATTAAGGCTGACCCCTCCTTACTCATACCGTTAAAAGTATGATTGTTTC
CTTCTATTTCAGAATTTCAATCCACAAAATCCATTTTGTCAAGGCGTTCA
AAACATCATTGGGGCGTACTATCATTCAATCAGAAGTGTCCAACTCTATG
GTAAACACCCATTTTTCTTGTGAAGTATTGAATACAATgatcatgttttt
tataaaaacaaactatataagtaCTATATACTTTTCGTTCATACGGGcgg
catgaaacttaaagttctgaaacaataaatcaaagtctcttttaatttga
acaagctctgatatcatcgagcactctcagcagatagaagaaaatagact
tataagaacaaactatataagtacattaggcttcgatggccTTAATATTA
AGTACAAGAGGTCTTGTGGTTCTACCCTTAAACCAATTTAATAGAATACA
GAAAAATACTTGTAAAATGGtaaatataagaacattttaagaacattttt
aggcttaaaactaaaaaagttgagaacCTCCAtcttttttgatgttcttt
taaaaaaaatgcttATGATGTTGTGATGTTGATGTGTCTTAGATTCCAAT
GATTTTATGCATGTCATAAGTAATGTGAATCGCAGAATGAATTGAATCAT
CGAATTTATGAGCGCAAATTGCACTCTCTCGATACCCGGAGATTACGTCT
GTCTGATAGCAGTGTATCGattaaagttttcaatttcttgtttttaattC
TATACCTTGCAGGTCCAACGAATTTCTCACCGGTCATCAACAACACGATA
CGGTAAAAAGAACATTCCATTCTTAAAAGTAATTTTCATTGCGTGCACTT
AATGATTAATCTCAATCAAGATAGATGCGCAATTATTTTTTACACTGAAT
TTTAGCTGGAAGAAAATTAGTTGGTTTTAGGATGCTCTTGAAATTACTTT
CACTGAATAGATGCCCCGTCAAATATCTACACAAATATCACCGCAATCTA
GGAGATTAGACTCCCTTCTTATATTTTTGGTTCATGGAACCAATTGAAAT
GATCAGTAACAATAGTTGTATTTCTGGTTTTTAGAATCGCTCAACAAAAT
CCACAAGGAAAACAGTATGTATATTTTATCATCTTTGAAATCCAACTCAT
TTTACTGTCTGTCGCATCGATCATCACTTATTAACCCGTAAGCGCTGaac
tttatatatccctggaccaagttactcaatgccggccaagcaaaatatta
tgatcggatttattttgaaattggtacccacggagagagcgctagatcta
gaTTCGCTTGTACACTAATGATGTATCGTCGTTTAtcgttaggcaaagtt
tcaatggcttctttgcgggtaccaaatttcgaaaaaacttcGATCCCAGA
TGGAGGATATAGCTtagtccagggatatataatatataaaggTCATTGAC
CGTAACATGGCTTTTGAGGGGTCTGGTAATGAATTCTTTGTTTTATGAGA
ATGtcaatgcaaaaatttgcagacattttgacgtcattccttCCTGGTAA
ACTCGAACCTAGTCTCCACGCTTTAAAGGATATGTGTATACAACAGCCAG
TGCGTACTTTCAGCGAATCCCAAGTCCGTGTTTTAACCCCTACACAAATA
AAATCCTTTCTTCAGATATTTCGTGTTGATGATCTTGACAGATGGAATTA
TCACAGACATGAATCAAACGAAGGAAGCCATCGTCAATGTAAGTGCTAGA
GATATACGCATGGTTAATATTATCTTTGATACTTTTTATCTTCTCGTCTT
TTCCTCGTTATTTTACTCTCATTCATCCCGCAAGTCTCGTCTTGCAGTTA
AAACCTTTTTGTATTGCTGATAATTATTTATGGTCAAACAAACAATAAAC
TTTATAGTTGAATATGGAATACGAAAAACTGggattaaaattttatttca
atatattttttcactacTGGAAAAATATTGAGCTTTACTTGAAAGGGTTA
CTTTAGTCGGATTCACAGACCTCTAATGATAATTCCTTTATGAAACCTTT
TCATCGGAGGATGATCAGATGCCTAGGGTACTGCCCGATTACTACATGGT
GAAAAACTAATTAATTCTGCGACCcgctttcgatagctatctacccgaag
gtaggggagagAGCTACCCTttttccctggattgctccacttagcCTTGA
GCATTCTCTTAACTGCTGAGCATCAAATACCATTTTTGTACAAAGTACGA
AATCTTTGGTATAACCCTGCCGAGggttgaacccacgaccttgcGCACCG
TGGCCGGGATGCACTTAAGTGACAGATAATAACAATCCATTATTTTCCTT
TTGTAGGCTGCCAACCTTCCTATCTCCATCATCATCGTAGGAGTGGGAAA
TGCTGACTTCTCAGGTAACAGCTTTATGAACAGTATCAAAAGTTCTTctg
tctcagacggatttccgtctcagtgAAGTTTTAAAAAGAGccttttccgt
ctcaaaattctgcataattcagcAAAGTTTCAAGAGTATGTGCTAATTTC
TGTGTAATAAATATTTTCCGTCtctttgctttgaccactgtatgaaattt
ttattaaatacaTTATTAAATACATTTGATTTGATTAAAATCAAATCACT
CGCTTTGCTTGGAACTATAGCTACATAACTGGAACAAATTTATGCTCCCC
GTGTGCGTGCCGAGTCATGAAAACTCTGCTGAAATAATTTAACTTCCTCT
CAAAGAATATTAGAAATCACTCATTTTCTAACTGTTGACACGACAACGTG
GCCATGCTTACAAAAGCAAATACAAACGGTTTCTTTGCACAGTTTAGACT
ATGCTCAGAAATTggatttttccagaaaaaaattttacccccactgttga
ggataatGCTTTTTCCCCCTTTGACCCCCAGTTGGATATCCAActatatc
gtattttttacttgaaaagacactttacctccccccctggatatccgctc
ccttgtagatgtttaaccccctggatatccgatatcctcaacagggggct
tggactatttctggaaaagcccattacgGTTCTAAACGAAACGGTTCCAA
AACATTGCGTGGACACCAAATATTTGAAACgttaaaaaagaagacgttgT
AAAGCAAAACCAATATGAAAACCTGTCCTTAAAAACCATAACGAAGCGAT
GCTAAACTGTAACGTTATAGTATGgtcttagaccatgttcagacgttacg
gttcgaacatacgttacggttccgttccgttccgaaacggttccgaaaca
agtgcgAACGTCAAAAAAGACGACGTTACAATGTAAAACAGATCGACGCG
GTtttgctccacttttttcatcggaacggaattgttccgttttcttgctc
caaaACGTTCCGAAACTATTATGAACACACTcaatccgtaacgaaaatca
tattggagcgaaacggaacattAACGTGTGAACATGATCTTAAAACCTGT
GTTTTGTTTCGTTTTGTCTAGCAATGGATCAGCTGGATGGTGATGACGTC
AGAGTATCGTCTAACGGAAGAAGTGCTGCAAGAGATATTGTCCAGGTAAC
GCTCGTTTTGACCCCTCGCACAATAGACTATCTATAtaagaaatattaag
aacaagttaagaacatattgCAAGGCTTTGCTCTAGAATACCAAATTCTt
gaggaaattgcacaaaaatactcacaaaatgctgaaaataagaacaagtt
caaactctcaaaatgttaagaaaattggatggcttcaaaaattttggatg
tacTTGTATTTGGAGTAccgatttgaaaaattaattgaatATCCTAGAGT
CGGGTAGTAATGTCAACTTTCCATGTAAAGAAAAAACGCTGCTTATAATG
TTTGAATAAACACCCCTttctaaagtcaaaaaaaaaatttaacgcCCTGG
GCGTCTATTCGAAGGGATACGGTGATTACTACATAGTAAGACGAAagcaa
aaatcaagaaatttatggaaacttttttatttttcagtttgtaCCATTTC
GTGATTACTTGACACAGAATCGTTACGACCCAGCGAACGGGGTTCGTTTG
GCGCAAAATGTTTTACACGAACTTCCATCACAATTAGTAGAATATTATAT
TAAACATCCACCAAATTTGTGATTGGAATAACATTTAGTATTCTTTAATG
ACAGATACTCTATGTATAAAGTAAAGCGAGTCGACATATATGGATGACTT
TGTTGTAGAATTGGACGAAATCGCACACAAAGGAAGAGACAATGCACCAA
CACCATCTTCGTTCAAAATAggaaatatgattcttcatgggCCCGTTGCT
CTTTTGCAGCCTGCCTTAAAGTCAAAAGACTGTTTTTATCCAATCAAACT
GCTAGTTGAAGTTGGTATAAACAAGAACTGCACATGAATAACTTGAAAGC
GTGTAGTACTAACTCAAATAAGATGTAGATACTCTGTTATGATTTAtaat
taaatgtttttgtaGGGGATGCAGTAGAGGATAGGCTGTAGATTTGGTTT
CTGTTAGGTCATCAAAGCAATAAACAACCAGAATGATAAAATACTCACAT
ATTTGTATATAAGTAATATGTAATAAATCATTATTTGGTATATATGTATC
ATGTCGTagtagattttattaaaactctCTCAGCTCATTTTCCTTTGCGG
AGACAACTGTTTCTTATTAGTTGGGacgatcttaatttttttacatcttt
ttattgaaatataaaTTATTTATGATAATAACAATACCAAATCCTTCATA
TTGACTGACCAAGGAAAGAAAACCTTCGACGCAGCCCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003010	XLOC_003010	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000052	supercontig	sc0000052:226375..245513 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.40296	4.25205	4.40446	3.29651	18.3879	10.6185	11.5431	8.01059	6.95538	8.40784	13.3588	2.89074	4.70537	3.43923	2.71254	3.99415	5.24329	4.05505	0	6.40047	2.6278	2.37972	3.94756	4.36623	3.7223	5.23136	10.0724	11.27	5.98245	3.8814

Blast

[Close]

BLAST of TCONS_00005278 vs. Swiss-Prot (Human)
Match: CPNE9 (Copine-9 OS=Homo sapiens GN=CPNE9 PE=1 SV=3)

HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 282/521 (54.13%), Postives = 374/521 (71.79%), Query Frame = 2

Query:  269 PLSKIEITIACKNLLDLDVFSKSDPFVIV---SMMQGQWVKIGQTEVMKNELNPTFVKSFTVDYYFEEQQMIKFEVYDEDSSSNNVKNHDFLGCFVTSLGSIVGEHGGKVEHPLQNTNYKKKSAGTIIIRSEEVGNSTDELLISLCGKNLDKKDFFGKSDPYLVFEKCNEDNSFTKVHKTEIITQNLNPAWKPFRIAVRTLCNGDLQRTIRVSCFDWDNDGSSDFIGSFETSAKELIDYKANNRYT-YELIXXXXXXXXXXXXXXGTIHLEQCTVEKKPSFVELMSKGIELNFIVAIDFTASNGEPNRPDSLHYNTQNQPSQYVQALDAIGGVLEDYDTDKLFPAYGFGAKIPPSQTVLHDFALNFNPQNPFCQGVQNIIGAYYHSIRSVQLYGPTNFSPVINNTIRIAQQNPQGKQYFVLMILTDGIITDMNQTKEAIVNAANLPISIIIVGVGNADFSAMDQLDGDDVRVSSNGRSAARDIVQFVPFRDYLTQNRYDPANGVRLAQNVLHELPSQLVEY 1819
            P +KIEIT++C+NLLDLD FSKSDP V++   S    +W + G+TEV+ N LNP FV+ F +DY+FEE+Q ++F+VY+ DS +N  K  DFLG    +LG ++G  G +VE  L  T    K  GTI++ +EE+ N  D   + LC   LDKKDFFGKSDP+LVF + NED +FT  HKTE++   LNP W+PF I VR LCNGD  RT+++  +DWD DGS DFIG F TS +EL   KA N++T YE++N +KK K KKY NSGT+ L   +V+ + +FV+ +  G +LNF VAIDFTASNG P +P SLHY +  Q S Y  AL A+G +++DYD+DKLFPAYGFGAK+PP   + H F LN N ++P C G++ ++ +Y+ S+R+VQLYGPT F+PVIN   R A +   G QY+VL+I+TDG+I+DM QTKEAIV+A++LP+SIIIVGVG A F AM++LDGDDVRVSS GR A RDIVQFVPFRDY+ ++     +  RLA++VL E+P QL+ Y
Sbjct:   12 PATKIEITVSCRNLLDLDTFSKSDPMVVLYTQSRASQEWREFGRTEVIDNTLNPDFVRKFVLDYFFEEKQNLRFDVYNVDSKTNISKPKDFLGQAFLALGEVIGGQGSRVERTL--TGVPGKKCGTILLTAEELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYREL--SKAQNQFTVYEVLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQLLSY 528

The following BLAST results are available for this feature:

BLAST of TCONS_00005278 vs. Swiss-Prot (Human)

BLAST of TCONS_00005278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CPNE9	0.000e+0	54.13	Copine-9 OS=Homo sapiens GN=CPNE9 PE=1 SV=3	[more]

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TCONS_00005278 (transcript) - C. hemisphaerica