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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005266 ID=TCONS_00005266|Name=TCONS_00005266|organism=Clytia hemisphaerica|type=transcript|length=1670bp
ttttttaggtAAACTGTCAAAATTGTTATTTCAAATTAAAACAACAGTTA
TATCTATCTATCATAGTGTGATAATTATTAGTGTGATAATAGCATATAAT
AATTAAGGCATGGGTCGAAACTATTGGTGTGAGTTTTGCAACAGAGGTTT
TGCTGATATTCTGTCTGTACGCAAAAAACACTTGAAGTCAAGTCAGCATT
TGAGAGCCAAAAAACTTTATTATGACTCATTCAAGGATGCTGCTACAATA
TTACAAGAGGAATCCACAAAGAATCCTTGTCATAGATTCTTCAAAACAGG
CCATTGTGATTTTGGAGATAATTGTCGATATTCACATAAAGATGTTGCGC
AACTTAAACGTGAGACTGAGAATAACTCAAGCATGAAAACAATTGATATT
GATAAGATTAATAACTGGGTtgaaaaatggaagaaaaagcATAAAGATAT
CTATGatgaaaaaccaaaatataGACTACCATCCGGCTTTCCTCCGCCAT
CACAGCTGCCAGTTTCATTACAACCACCACTAGAAAATGTTTCATTTCCT
ACTCAAGATTGGGTGTGATTGTAATTCTATGCAATTTCTGcaccataagt
tggtctaatgtggACAATCCATATTTTCACTCTCATTTTTTCCCTTTCGC
TGCTATAAGTAAAGATATgatttcaatcagcgattctgaACTTCCTTTTC
ATTCCTATCCTTAAGGAAGACTTGCAGAAATGGATGAGGTTGTCAACATG
AGACCATCTCGCAGTTTATTATTGTGCATGGTTCAACACAAATTTCTTTG
GATCAGGAGATGGTACCTTCAGAAAAAGCTAAGACGAAGATTGGAAGTGT
CTTCAAAATGGGAGTGGTGCTAAGAAAGAACATCCTTTTGATTGAGGCAA
TCACATGAATTTTCCTTATTGTAAGCTAAAGCAGTCAAATTGAAAGACTC
GGAAAGCATAAGCTTCTAGGATCAGTATTTTTCAAGTTTGGAGGGTTTTA
TACTACGTATAATAAGTGTGTatctttgaaattttatattatTCTAATTT
ATATTGTTATGCTGttgtttttactatttttaaaaCTAGTTAAATAAAGT
TAACCAAACGTAAattctcgtgatccaagccacgataactccccattata
tttgttaaaaaagaaattataaaatcaTCAGATGAACCCATTATtacttt
gtttgtgttttatttGCTAATAATAGtccagaaatttttttccatgcTCG
TGCCATcagaattgaaaattgattcaGTATTTTCTTACTTGAatagtttt
aaaatttcaaattgtttattttatctCTTTTATAGTAACACAATATCCAA
AGAcgaaatataaaataataatagtAGCAACAATGATTAATGACACGAAT
TTAGCAGACTTCTTTTCACAACCATTGCAACAGAATCGTTCACAAATGCT
TTCCTCATCAAGGCCTTCATGGAGACGATCGATGCGTAAACGACGTGCCA
ATAGTGATAGTGAACTACCTATGTTACCAATTATTGATTATGACTCACAT
GGAATTAATGATGATAGTGCAATCGATTTACTTTCAGACTCTATTGATAG
GTTTGGTGAGTAGATTTATCATTATCTCTTTAAGttgctttttttaaatc
tcgttaatttgagcacattt Run BLAST on NCBI transcript from alignment at sc0000052:76591..78260+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005266 ID=TCONS_00005266|Name=TCONS_00005266|organism=Clytia hemisphaerica|type=transcript|length=1670bp|location=Sequence derived from alignment at sc0000052:76591..78260+ (Clytia hemisphaerica)
ttttttaggtAAACTGTCAAAATTGTTATTTCAAATTAAAACAACAGTTA
TATCTATCTATCATAGTGTGATAATTATTAGTGTGATAATAGCATATAAT
AATTAAGGCATGGGTCGAAACTATTGGTGTGAGTTTTGCAACAGAGGTTT
TGCTGATATTCTGTCTGTACGCAAAAAACACTTGAAGTCAAGTCAGCATT
TGAGAGCCAAAAAACTTTATTATGACTCATTCAAGGATGCTGCTACAATA
TTACAAGAGGAATCCACAAAGAATCCTTGTCATAGATTCTTCAAAACAGG
CCATTGTGATTTTGGAGATAATTGTCGATATTCACATAAAGATGTTGCGC
AACTTAAACGTGAGACTGAGAATAACTCAAGCATGAAAACAATTGATATT
GATAAGATTAATAACTGGGTtgaaaaatggaagaaaaagcATAAAGATAT
CTATGatgaaaaaccaaaatataGACTACCATCCGGCTTTCCTCCGCCAT
CACAGCTGCCAGTTTCATTACAACCACCACTAGAAAATGTTTCATTTCCT
ACTCAAGATTGGGTGTGATTGTAATTCTATGCAATTTCTGcaccataagt
tggtctaatgtggACAATCCATATTTTCACTCTCATTTTTTCCCTTTCGC
TGCTATAAGTAAAGATATgatttcaatcagcgattctgaACTTCCTTTTC
ATTCCTATCCTTAAGGAAGACTTGCAGAAATGGATGAGGTTGTCAACATG
AGACCATCTCGCAGTTTATTATTGTGCATGGTTCAACACAAATTTCTTTG
GATCAGGAGATGGTACCTTCAGAAAAAGCTAAGACGAAGATTGGAAGTGT
CTTCAAAATGGGAGTGGTGCTAAGAAAGAACATCCTTTTGATTGAGGCAA
TCACATGAATTTTCCTTATTGTAAGCTAAAGCAGTCAAATTGAAAGACTC
GGAAAGCATAAGCTTCTAGGATCAGTATTTTTCAAGTTTGGAGGGTTTTA
TACTACGTATAATAAGTGTGTatctttgaaattttatattatTCTAATTT
ATATTGTTATGCTGttgtttttactatttttaaaaCTAGTTAAATAAAGT
TAACCAAACGTAAattctcgtgatccaagccacgataactccccattata
tttgttaaaaaagaaattataaaatcaTCAGATGAACCCATTATtacttt
gtttgtgttttatttGCTAATAATAGtccagaaatttttttccatgcTCG
TGCCATcagaattgaaaattgattcaGTATTTTCTTACTTGAatagtttt
aaaatttcaaattgtttattttatctCTTTTATAGTAACACAATATCCAA
AGAcgaaatataaaataataatagtAGCAACAATGATTAATGACACGAAT
TTAGCAGACTTCTTTTCACAACCATTGCAACAGAATCGTTCACAAATGCT
TTCCTCATCAAGGCCTTCATGGAGACGATCGATGCGTAAACGACGTGCCA
ATAGTGATAGTGAACTACCTATGTTACCAATTATTGATTATGACTCACAT
GGAATTAATGATGATAGTGCAATCGATTTACTTTCAGACTCTATTGATAG
GTTTGGTGAGTAGATTTATCATTATCTCTTTAAGttgctttttttaaatc
tcgttaatttgagcacattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005266-exon-sc0000052-1491911889:76591..78260 | TCONS_00005266-exon-sc0000052-1491911889:76591..78260 | Clytia hemisphaerica | exon |
| TCONS_00005266-exon-sc0000052-1510915933:76591..78260 | TCONS_00005266-exon-sc0000052-1510915933:76591..78260 | Clytia hemisphaerica | exon |
| TCONS_00005266-exon-sc0000052-1575043694:76591..78260 | TCONS_00005266-exon-sc0000052-1575043694:76591..78260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:76591..78260 + |
Blast
BLAST of TCONS_00005266 vs. Swiss-Prot (Human)
Match: ZMAT5 (Zinc finger matrin-type protein 5 OS=Homo sapiens GN=ZMAT5 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.082e-26 Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 2
Query: 110 MGRNYWCEFCNRGFADILSVRKKHLKSSQHLRAKKLYYDSFKDAATILQEESTKNPCHRFFKTGHCDFGDNCRYSH---KDVAQLKRETENNSSMKTIDIDK-------INNWVEKWKKK 439
MG+ Y+C++C+R F D L RKKHL QHL+AKK++YD F+DAA IL +E K PC +F TG CDFG NCR+SH +D+ +L + E + +D + +W+EK K+
Sbjct: 1 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR 120
The following BLAST results are available for this feature:
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