|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005262 ID=TCONS_00005262|Name=TCONS_00005262|organism=Clytia hemisphaerica|type=transcript|length=2961bp
cataGTAACGCAAATCAATTGCCATTAATTAAAGGAATGTTTAATCGATT
AGCAAGGGGTTTGGGCACAAAACAAGTTCCATCAGATTTCTAAATACTGT
TTCAATGAAATCTAATTACTGTCTGATTTGTGAAAAGTTGTCATTTCGTT
TGCGGATGAGATACTGTGTATGAGGTTTCGCTTGTTTGAAAAACTAGTGT
TGGAGATCTGGTTGTGATTTTTTTGGTGAACTATTTCTGAGGTCTTTCAC
AAGGATGTCGCTTATCAAGGTCCGTTATGGCGCCAACAAAAACCTTCTTG
TAAACACAGACTGTTCGTCGACCATTTTGTTGGCATGGTTACGAaagaaa
tgtaaacaaaacaacGTCAATCGGCTTGATTTATCAGATGAGGATGGTAA
TTTGCAGAACATTCATTCGGTAAAGTCTCACGATTCGGTATCAACGAAAC
TGGCGGATCGGAAAGAATATATTTTGGTGAGCGTGCAGACTGTTGATAAG
AAAGTCATTATTACGTCATTATTGGACGGTTGGGCACCAGTAGTCCCCGA
AGAGAGGCCTGGGACTAATTCGAGGATCAGAAGAAGATCTTCACAGCTCT
CCATTAGACGATGATGTTGATGGTGATTTAATACGTCGAACTTATCATGC
TTCATTTGAAAGACTGATCGAGGGAAAGATATTTCAGAGTTTCGTCGTGC
CTGGTTGCTACGGAGATACAAACTTTCGTTATTGACCATTCTCGACTTTT
GAGCATCTGACAATAAAAACACTTCAATGGAACAAATTTAGGTACcattt
taatgtaaataagAATCAAAAAGGTTATATTTTATTCGCCTTATTTACCA
GAGGCACTCCAATGAAGTCCGGAACATTTATATTGTTTTAGATTCCAGAG
TTTTTCGGGTCATTGCATGCCAAATATTATGGATAAAGTGTAACGCTATA
CAatattttgtattaaaaaagaaaattgaactaACATACAAACCAATCGA
TAGAAATCGTCTGCAAAACCCGGCCTGCCAGGAAAAGGTTATCAACATTT
TAATTGATCAACgaaactcttttttataagaaccagtaaattgaGGCTCG
ATGAGGCtcggttgttcttattttttggcactttgaggaTAAAAAAGTTT
TCATCCGTTTTTATTTCTAGAGCAAAATTGGTTTAAAATACCcatatttt
tactattttgacacttaatttgtttaaaactcaccAGACTCAGCAATGct
cttgaattgttcttatgaaattgttcttataaaaaaacagtgTGAACAAG
TTTAACTTTCAGACTTCGCTCATGATTAAATCTTTTTGTACAATACTGAC
GAAGTATATAAAACTCAATTCAACATATCATACTTTAAGTGaatttcaaa
aacatcaaattcatcCAATAAgctagttttttaaaaatatataaccCTTT
TTAGGAAGGAACGCTTTCGAGCCTTATTTTTCTATTGGCTGCTGAGAGTA
ACATGTTAATGTTttcataaatattttcttcatagtggaaatctttttgt
tttcgttTCTTAAAAGTTCGAGTACCCAATCATTCTGTCTTGGTATTGAA
AGTGTGTCGTAAATATGGCGAGTTTGGAGCTGATGACAGTTTATGACGTT
CGAAACTCGACGACTGGTCCATGCTGTAGTCTTTACCACTGATCTGTAAC
TTTTGTTGATGGCGCCCGACCAAGCTATTCAAGAAGCGAAATAATTGTTG
TCGAAAACGTCCTAAAAGGCCAGCGTAGATGAAAACGTTGGCGATACTGT
TGCACATGTGGAGAATCTTGAAGAACGCGTTCAAATTTCTTGTGGTCTGT
GAGTGAGGGATTCCTTCGCCTACTTTCCACGAAATCATGTATGCGAGATG
TAGGATTTCACGCGGGAAAACGAGAATGATGAAAACAAGCGCTAAAATGA
TCAGCATTTTCATGATATTCTTATTCTTACGATTTAACTTTTGTTCTTTG
AGTGTTCTCATGCTTGAGCGGTGGTATAAAACACCATAAATGAGAGTGAC
AGTCACTCCGAACGTGACAACGAAGATCAGATCTCGTTGCAGGTAAATGA
TGACGGTGGGGTAAAAGAACCAATCAACGCGCAGGTCAATGACGGTGCAA
CTATATTTGGGATGAACTTCGTTGTAAACGATGGAAGGTGTTTCGCAAAG
AATCGAATACAAAATGATGACGAGGATGAAAAGTTGAAGATGTTGGTCTT
TCAGGTGAACTTTGACAGGTTTGCAAATGACCAGACACCTTTCGATGGTA
ATCAACCAAATTACACCAAATGAAATGGTGATTGTACACTTGGCGACCAC
TGGCAACACCTTGCATCCTATTCTTCCGAAATGCCAACTTCGATTGAAAG
TCAATTGCCAATATAAGTAAAGCGAGGGGTTAATGATACTGGCGAGCAAA
TCCACCATAGCCAAATAAAAGATTAACCGAGCCATTCCATGTAATGAGCG
AGGATTTCGtctgaaaaaataacaaactaaGGCATTTCCAGTTACACCTA
CAATGAAGATCAAAATAAAGGAAACGACCAGCATTGAATCTACCCAATCA
AATTGACGTTCGATTGCTGTCTTTGTTGTGTTGACGGAACTGTTCATCAG
AAGGTTCGAAATATTGGAAACAATGTTTGGAGTCAGGATATCTGCGAGTG
AACTATTGAGATGAAAATTCGTTGATGGTTTTGAGCTGGAGTTCGTTGCT
GATCCATTGTTGAGAGTTACATTAAAAAGAGTTTTCTGTTGGAGGTTTGG
AGACGAGGTGGAAGTGAAGTTTGAGGTTCCATTGTACAAAACATCCAAAG
AATTGTTTCTCGATATCAGTATATTATGTTCCTCTGTTGTGATGTTTCCC
ATGTTTTCTATTCGATGCGAAATGTACAATTGATATGATCTTTCTCATGT
GGTGtcagaaa Run BLAST on NCBI protein sequence of TCONS_00005262-protein >TCONS_00005262-protein ID=TCONS_00005262-protein|Name=TCONS_00005262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MGNITTEEHNILISRNNSLDVLYNGTSNFTSTSSPNLQQKTLFNVTLNNG
SATNSSSKPSTNFHLNSSLADILTPNIVSNISNLLMNSSVNTTKTAIERQ
FDWVDSMLVVSFILIFIVGVTGNALVCYFFRRNPRSLHGMARLIFYLAMV
DLLASIINPSLYLYWQLTFNRSWHFGRIGCKVLPVVAKCTITISFGVIWL
ITIERCLVICKPVKVHLKDQHLQLFILVIILYSILCETPSIVYNEVHPKY
SCTVIDLRVDWFFYPTVIIYLQRDLIFVVTFGVTVTLIYGVLYHRSSMRT
LKEQKLNRKNKNIMKMLIILALVFIILVFPREILHLAYMISWKVGEGIPH
SQTTRNLNAFFKILHMCNSIANVFIYAGLLGRFRQQLFRFLNSLVGRHQQ
KLQISGKDYSMDQSSSFERHKLSSAPNSPYLRHTFNTKTE Run BLAST on NCBI transcript from alignment at sc0000051:726945..729905 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005262 ID=TCONS_00005262|Name=TCONS_00005262|organism=Clytia hemisphaerica|type=transcript|length=2961bp|location=Sequence derived from alignment at sc0000051:726945..729905 (Clytia hemisphaerica)
tttctgaCACCACATGAGAAAGATCATATCAATTGTACATTTCGCATCGA
ATAGAAAACATGGGAAACATCACAACAGAGGAACATAATATACTGATATC
GAGAAACAATTCTTTGGATGTTTTGTACAATGGAACCTCAAACTTCACTT
CCACCTCGTCTCCAAACCTCCAACAGAAAACTCTTTTTAATGTAACTCTC
AACAATGGATCAGCAACGAACTCCAGCTCAAAACCATCAACGAATTTTCA
TCTCAATAGTTCACTCGCAGATATCCTGACTCCAAACATTGTTTCCAATA
TTTCGAACCTTCTGATGAACAGTTCCGTCAACACAACAAAGACAGCAATC
GAACGTCAATTTGATTGGGTAGATTCAATGCTGGTCGTTTCCTTTATTTT
GATCTTCATTGTAGGTGTAACTGGAAATGCCttagtttgttattttttca
gaCGAAATCCTCGCTCATTACATGGAATGGCTCGGTTAATCTTTTATTTG
GCTATGGTGGATTTGCTCGCCAGTATCATTAACCCCTCGCTTTACTTATA
TTGGCAATTGACTTTCAATCGAAGTTGGCATTTCGGAAGAATAGGATGCA
AGGTGTTGCCAGTGGTCGCCAAGTGTACAATCACCATTTCATTTGGTGTA
ATTTGGTTGATTACCATCGAAAGGTGTCTGGTCATTTGCAAACCTGTCAA
AGTTCACCTGAAAGACCAACATCTTCAACTTTTCATCCTCGTCATCATTT
TGTATTCGATTCTTTGCGAAACACCTTCCATCGTTTACAACGAAGTTCAT
CCCAAATATAGTTGCACCGTCATTGACCTGCGCGTTGATTGGTTCTTTTA
CCCCACCGTCATCATTTACCTGCAACGAGATCTGATCTTCGTTGTCACGT
TCGGAGTGACTGTCACTCTCATTTATGGTGTTTTATACCACCGCTCAAGC
ATGAGAACACTCAAAGAACAAAAGTTAAATCGTAAGAATAAGAATATCAT
GAAAATGCTGATCATTTTAGCGCTTGTTTTCATCATTCTCGTTTTCCCGC
GTGAAATCCTACATCTCGCATACATGATTTCGTGGAAAGTAGGCGAAGGA
ATCCCTCACTCACAGACCACAAGAAATTTGAACGCGTTCTTCAAGATTCT
CCACATGTGCAACAGTATCGCCAACGTTTTCATCTACGCTGGCCTTTTAG
GACGTTTTCGACAACAATTATTTCGCTTCTTGAATAGCTTGGTCGGGCGC
CATCAACAAAAGTTACAGATCAGTGGTAAAGACTACAGCATGGACCAGTC
GTCGAGTTTCGAACGTCATAAACTGTCATCAGCTCCAAACTCGCCATATT
TACGACACACTTTCAATACCAAGACAGAATGATTGGGTACTCGAACTTTT
AAGAaacgaaaacaaaaagatttccactatgaagaaaatatttatgaaAA
CATTAACATGTTACTCTCAGCAGCCAATAGAAAAATAAGGCTCGAAAGCG
TTCCTTCCTAAAAAGggttatatatttttaaaaaactagcTTATTGgatg
aatttgatgtttttgaaattCACTTAAAGTATGATATGTTGAATTGAGTT
TTATATACTTCGTCAGTATTGTACAAAAAGATTTAATCATGAGCGAAGTC
TGAAAGTTAAACTTGTTCAcactgtttttttataagaacaatttcataag
aacaattcaagagCATTGCTGAGTCTggtgagttttaaacaaattaagtg
tcaaaatagtaaaaatatgGGTATTTTAAACCAATTTTGCTCTAGAAATA
AAAACGGATGAAAACTTTTTTAtcctcaaagtgccaaaaaataagaacaa
ccgaGCCTCATCGAGCCtcaatttactggttcttataaaaaagagtttcG
TTGATCAATTAAAATGTTGATAACCTTTTCCTGGCAGGCCGGGTTTTGCA
GACGATTTCTATCGATTGGTTTGTATGTtagttcaattttcttttttaat
acaaaatatTGTATAGCGTTACACTTTATCCATAATATTTGGCATGCAAT
GACCCGAAAAACTCTGGAATCTAAAACAATATAAATGTTCCGGACTTCAT
TGGAGTGCCTCTGGTAAATAAGGCGAATAAAATATAACCTTTTTGATTct
tatttacattaaaatgGTACCTAAATTTGTTCCATTGAAGTGTTTTTATT
GTCAGATGCTCAAAAGTCGAGAATGGTCAATAACGAAAGTTTGTATCTCC
GTAGCAACCAGGCACGACGAAACTCTGAAATATCTTTCCCTCGATCAGTC
TTTCAAATGAAGCATGATAAGTTCGACGTATTAAATCACCATCAACATCA
TCGTCTAATGGAGAGCTGTGAAGATCTTCTTCTGATCCTCGAATTAGTCC
CAGGCCTCTCTTCGGGGACTACTGGTGCCCAACCGTCCAATAATGACGTA
ATAATGACTTTCTTATCAACAGTCTGCACGCTCACCAAAATATATTCTTT
CCGATCCGCCAGTTTCGTTGATACCGAATCGTGAGACTTTACCGAATGAA
TGTTCTGCAAATTACCATCCTCATCTGATAAATCAAGCCGATTGACgttg
ttttgtttacatttcttTCGTAACCATGCCAACAAAATGGTCGACGAACA
GTCTGTGTTTACAAGAAGGTTTTTGTTGGCGCCATAACGGACCTTGATAA
GCGACATCCTTGTGAAAGACCTCAGAAATAGTTCACCAAAAAAATCACAA
CCAGATCTCCAACACTAGTTTTTCAAACAAGCGAAACCTCATACACAGTA
TCTCATCCGCAAACGAAATGACAACTTTTCACAAATCAGACAGTAATTAG
ATTTCATTGAAACAGTATTTAGAAATCTGATGGAACTTGTTTTGTGCCCA
AACCCCTTGCTAATCGATTAAACATTCCTTTAATTAATGGCAATTGATTT
GCGTTACtatg Coding sequence (CDS) from alignment at sc0000051:726945..729905 >TCONS_00005262 ID=TCONS_00005262|Name=TCONS_00005262|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000051:726945..729905 (Clytia hemisphaerica)
ATGGGAAACATCACAACAGAGGAACATAATATACTGATATCGAGAAACAA
TTCTTTGGATGTTTTGTACAATGGAACCTCAAACTTCACTTCCACCTCGT
CTCCAAACCTCCAACAGAAAACTCTTTTTAATGTAACTCTCAACAATGGA
TCAGCAACGAACTCCAGCTCAAAACCATCAACGAATTTTCATCTCAATAG
TTCACTCGCAGATATCCTGACTCCAAACATTGTTTCCAATATTTCGAACC
TTCTGATGAACAGTTCCGTCAACACAACAAAGACAGCAATCGAACGTCAA
TTTGATTGGGTAGATTCAATGCTGGTCGTTTCCTTTATTTTGATCTTCAT
TGTAGGTGTAACTGGAAATGCCttagtttgttattttttcagaCGAAATC
CTCGCTCATTACATGGAATGGCTCGGTTAATCTTTTATTTGGCTATGGTG
GATTTGCTCGCCAGTATCATTAACCCCTCGCTTTACTTATATTGGCAATT
GACTTTCAATCGAAGTTGGCATTTCGGAAGAATAGGATGCAAGGTGTTGC
CAGTGGTCGCCAAGTGTACAATCACCATTTCATTTGGTGTAATTTGGTTG
ATTACCATCGAAAGGTGTCTGGTCATTTGCAAACCTGTCAAAGTTCACCT
GAAAGACCAACATCTTCAACTTTTCATCCTCGTCATCATTTTGTATTCGA
TTCTTTGCGAAACACCTTCCATCGTTTACAACGAAGTTCATCCCAAATAT
AGTTGCACCGTCATTGACCTGCGCGTTGATTGGTTCTTTTACCCCACCGT
CATCATTTACCTGCAACGAGATCTGATCTTCGTTGTCACGTTCGGAGTGA
CTGTCACTCTCATTTATGGTGTTTTATACCACCGCTCAAGCATGAGAACA
CTCAAAGAACAAAAGTTAAATCGTAAGAATAAGAATATCATGAAAATGCT
GATCATTTTAGCGCTTGTTTTCATCATTCTCGTTTTCCCGCGTGAAATCC
TACATCTCGCATACATGATTTCGTGGAAAGTAGGCGAAGGAATCCCTCAC
TCACAGACCACAAGAAATTTGAACGCGTTCTTCAAGATTCTCCACATGTG
CAACAGTATCGCCAACGTTTTCATCTACGCTGGCCTTTTAGGACGTTTTC
GACAACAATTATTTCGCTTCTTGAATAGCTTGGTCGGGCGCCATCAACAA
AAGTTACAGATCAGTGGTAAAGACTACAGCATGGACCAGTCGTCGAGTTT
CGAACGTCATAAACTGTCATCAGCTCCAAACTCGCCATATTTACGACACA
CTTTCAATACCAAGACAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005262-exon-sc0000051-1491911889:726945..729905 | TCONS_00005262-exon-sc0000051-1491911889:726945..729905 | Clytia hemisphaerica | exon |
| TCONS_00005262-exon-sc0000051-1510915933:726945..729905 | TCONS_00005262-exon-sc0000051-1510915933:726945..729905 | Clytia hemisphaerica | exon |
| TCONS_00005262-exon-sc0000051-1575043694:726945..729905 | TCONS_00005262-exon-sc0000051-1575043694:726945..729905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:726945..729905 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
