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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005258 ID=TCONS_00005258|Name=TCONS_00005258|organism=Clytia hemisphaerica|type=transcript|length=2785bp gcagaaaaacaaacaaaacaaacatgATTTCACTCCAAGTGGATCCTTAC CTGAACACCAACCATTCTGCTTTTATCACAACTGGCACAGCACGTGCACT GAAGCTGCTCAATAAGCAATGGATCTCTGTGGAGAAAACTGTGTCAAATA ATGGAGTAGATTCTTTGTTAACTATGTCAGAAAATATTGttaaagaaaag tttgaaaaatgtgaGGAACGAAAAACCTGGTACCCTTTACAAGTCAAcat ttattcttcttttgatgaagaaaaatcttacaccgatgacgtcatctatG TCTCAACTTCTGATTTGTTCAATATACTTTCGCATTCTCCTGGATTGTAT AAACAATATTATGACCAGAAGATCGAAATTTCGTTTGAAACATTGCGTGA TATCTCGACTTACAAGGAGAAGTACACAGCAAGTCATTCCACAATTTCTT TACTGTATTGCCCTTATGGTAACTGTAATGATAACCTTGTGGAtgatctt ttaaaagaacattttcaaaaacgtcGATTGATGTCACCTAAAGAAATCTT TCCCATATTCGTCCAATCGCATCAAAAGATCTCACGCGATACACCTTTTG TTTTCTGGTTTCGTGTTGACAACCTTGTTGCCAAGGACACGAGTCACGTG CACCAAAACAATGGAAGATTTGTTGGTATGGAAACAGAATTAGTTTTGGG GAAAAATACCGAAAGTTATATACCGTTTTGTGGATGTATGGTGAAAAATA GACCTCTTTTATTCGAACTGTTTTTATCCAAAGATTTACGTTCGGCGTAC CAAAGCTATTTACATCAATTGACAGATTCTTTGCGTATGCTGAAAACAGG AAAGGTTTCCACAGCTGATACCGCCATTTTGGTTGAAGCACCTACAGGTT ATGGTAAAGGAATTGTCCTGCAAGTGTTTTGTTTCGATCAATGTTTACAC TTTACTGAAGTCAATTGTCTGGATGTTGTGTCAGAATCTTTTGCTGCTAC CGAGAAACGCCTAAAGACTCTTGTTGATAATGTTAAAAGTAGTCGGCCAT GTGTTTTATACTTGAAGAATATCCACGCACTCTGCAAAGATAAAGAGGGA GAGAAAGAGGAGAGAAGACTTGTCAGCTATTTCGCAAATATTTTACGAGA ACTTGATTGTCATGAACTACCTCTCTTGCTAGTGGCAAGCACAAATAAAG TGAATCAAATGAGTGCTCGATTCTTCTCGCTGTTCATGTATCACCTCTGC TTAGACGCGCCATCCGCAGATGAAAGAAAACACATTTTGAACACTTTGTT GAATTGTCGTTTAAAGGAAGCCAACGAAATCGCGCTGAAAACGAGTGGTT TCTTTTTGTCAGATCTAATTGAACTTGTTCGAAAAGCGAGTCCCCTCTTT CGTAAAATGTTGGAAGAGCGTCACCCGGGAGAGGGAGGAGAAGATGAAAT ATCAATCCCAGAATGCAAAGAACTGTTTCTAAAAGCAGTCGATGAGGTTC GCTCAGTAAAGTCCGGCACCCTGACCAACGTCAAAGTTCAAAAAGTGACG TGGAAGGATGTCGGCGGTTTAGAGAACGTCAAAAAAGATATTTTCGATAC GATCGAGCTACCCATGAAATTTCCGACTTTGTTCCGTAAGAATATGAGAC GATCTGGGTTACTCTTTTACGGTCCTCCTGGATGTGGGAAAACTTTATTA GCAAAAGCTGTAGCGACTGAATTCAATTTGAACTTTTACAGTGTGAAAGG ACCCGAGTTGATTAATATGTATGTTGGACAGAGTGAAGAGAACGTCAGAG AAACGTTCAAAACAGCTCGAAGAATGGCTCCGTGTGTTGTCTTCTTCGAT GAGATTGACTCGCTGGCACCGAACCGTGGTCGGACAGGCGATTCCGGTGG TGTAATGGACCGGATCGTTTCACAACTTTTATCGGAGCTCGATGGAATGC ATGATAATACTAATGTTTTCATCATTGCCGCCACCAACCGCCCTGACCTC TTAGACGCCGCCCTTTTACGCCCCGGGCGTTTCGATAAATTGGTTTACGT AGGAATACCAGAAGGGCGGGACGAGCGTTTGAAACTGNCCCGGGCGTTTC GATAAATTGGTTTACGTAGGAATACCAGAAGGGCGGAACGAGCGTTTGAA ACTGTTGAGAGCTGTTACTCAAAAGATTCATCTTTCGCCTGAAATTTCTT TGGAGGAAATTGTTGAAAAACTGCCTGCCAATTTAACCGGCGCCGATTTC AAAGCCTTAGCATCGAATGCTGTGATGTGTTGCATCAAAAGAATGATCAT AGCTCACGAGAATCAGAAAATTCCTTTGAACGTGGATCAAGCGATTGTTT CGATGGAAGATTTCGAGGAAGCCATCACTTCATGTTCGCCTTCCGTTTCC ATCGAAGAATTAGAACGATATAAATCGATTCAAGACGAAATCACTAGAAA ATAATTTCACTgactttatatttttattttttaatagtttttctaATCCT TATCTAAGGGCTAATCTATCCCTGTATCTTTAAGCCATTCCTGTatctat tttttccatcctGCTCAGTTTGTGACCCATGATGTTATTCCTCTTTTGGA AAAGTTGGATTTTCCTTTCTTTCCTTTGAGATTTCAGCATTCAATAAGCT gtaatttataagaatcaaaattttaactcttgatagacggtgacatactt TTTGGTGattaattcttacaaagtaaacaagggacgatgcataatatgag catatttatatttaggcatctactttataagaagc Run BLAST on NCBI protein sequence of TCONS_00005258-protein >TCONS_00005258-protein ID=TCONS_00005258-protein|Name=TCONS_00005258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp
RKTNKTNMISLQVDPYLNTNHSAFITTGTARALKLLNKQWISVEKTVSNN GVDSLLTMSENIVKEKFEKCEERKTWYPLQVNIYSSFDEEKSYTDDVIYV STSDLFNILSHSPGLYKQYYDQKIEISFETLRDISTYKEKYTASHSTISL LYCPYGNCNDNLVDDLLKEHFQKRRLMSPKEIFPIFVQSHQKISRDTPFV FWFRVDNLVAKDTSHVHQNNGRFVGMETELVLGKNTESYIPFCGCMVKNR PLLFELFLSKDLRSAYQSYLHQLTDSLRMLKTGKVSTADTAILVEAPTGY GKGIVLQVFCFDQCLHFTEVNCLDVVSESFAATEKRLKTLVDNVKSSRPC VLYLKNIHALCKDKEGEKEERRLVSYFANILRELDCHELPLLLVASTNKV NQMSARFFSLFMYHLCLDAPSADERKHILNTLLNCRLKEANEIALKTSGF FLSDLIELVRKASPLFRKMLEERHPGEGGEDEISIPECKELFLKAVDEVR SVKSGTLTNVKVQKVTWKDVGGLENVKKDIFDTIELPMKFPTLFRKNMRR SGLLFYGPPGCGKTLLAKAVATEFNLNFYSVKGPELINMYVGQSEENVRE TFKTARRMAPCVVFFDEIDSLAPNRGRTGDSGGVMDRIVSQLLSELDGMH DNTNVFIIAATNRPDLLDAALLRPGRFDKLVYVGIPEGRDERLKLXRAFR Run BLAST on NCBI transcript from alignment at sc0000051:615622..618406 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005258 ID=TCONS_00005258|Name=TCONS_00005258|organism=Clytia hemisphaerica|type=transcript|length=2785bp|location=Sequence derived from alignment at sc0000051:615622..618406 (Clytia hemisphaerica) gcttcttataaagtagatgcctaaatataaatatgctcatattatgcatc
gtcccttgtttactttgtaagaattaatCACCAAAaagtatgtcaccgtc
tatcaagagttaaaattttgattcttataaattacAGCTTATTGAATGCT
GAAATCTCAAAGGAAAGAAAGGAAAATCCAACTTTTCCAAAAGAGGAATA
ACATCATGGGTCACAAACTGAGCaggatggaaaaaatagatACAGGAATG
GCTTAAAGATACAGGGATAGATTAGCCCTTAGATAAGGATtagaaaaact
attaaaaaataaaaatataaagtcAGTGAAATTATTTTCTAGTGATTTCG
TCTTGAATCGATTTATATCGTTCTAATTCTTCGATGGAAACGGAAGGCGA
ACATGAAGTGATGGCTTCCTCGAAATCTTCCATCGAAACAATCGCTTGAT
CCACGTTCAAAGGAATTTTCTGATTCTCGTGAGCTATGATCATTCTTTTG
ATGCAACACATCACAGCATTCGATGCTAAGGCTTTGAAATCGGCGCCGGT
TAAATTGGCAGGCAGTTTTTCAACAATTTCCTCCAAAGAAATTTCAGGCG
AAAGATGAATCTTTTGAGTAACAGCTCTCAACAGTTTCAAACGCTCGTTC
CGCCCTTCTGGTATTCCTACGTAAACCAATTTATCGAAACGCCCGGGNCA
GTTTCAAACGCTCGTCCCGCCCTTCTGGTATTCCTACGTAAACCAATTTA
TCGAAACGCCCGGGGCGTAAAAGGGCGGCGTCTAAGAGGTCAGGGCGGTT
GGTGGCGGCAATGATGAAAACATTAGTATTATCATGCATTCCATCGAGCT
CCGATAAAAGTTGTGAAACGATCCGGTCCATTACACCACCGGAATCGCCT
GTCCGACCACGGTTCGGTGCCAGCGAGTCAATCTCATCGAAGAAGACAAC
ACACGGAGCCATTCTTCGAGCTGTTTTGAACGTTTCTCTGACGTTCTCTT
CACTCTGTCCAACATACATATTAATCAACTCGGGTCCTTTCACACTGTAA
AAGTTCAAATTGAATTCAGTCGCTACAGCTTTTGCTAATAAAGTTTTCCC
ACATCCAGGAGGACCGTAAAAGAGTAACCCAGATCGTCTCATATTCTTAC
GGAACAAAGTCGGAAATTTCATGGGTAGCTCGATCGTATCGAAAATATCT
TTTTTGACGTTCTCTAAACCGCCGACATCCTTCCACGTCACTTTTTGAAC
TTTGACGTTGGTCAGGGTGCCGGACTTTACTGAGCGAACCTCATCGACTG
CTTTTAGAAACAGTTCTTTGCATTCTGGGATTGATATTTCATCTTCTCCT
CCCTCTCCCGGGTGACGCTCTTCCAACATTTTACGAAAGAGGGGACTCGC
TTTTCGAACAAGTTCAATTAGATCTGACAAAAAGAAACCACTCGTTTTCA
GCGCGATTTCGTTGGCTTCCTTTAAACGACAATTCAACAAAGTGTTCAAA
ATGTGTTTTCTTTCATCTGCGGATGGCGCGTCTAAGCAGAGGTGATACAT
GAACAGCGAGAAGAATCGAGCACTCATTTGATTCACTTTATTTGTGCTTG
CCACTAGCAAGAGAGGTAGTTCATGACAATCAAGTTCTCGTAAAATATTT
GCGAAATAGCTGACAAGTCTTCTCTCCTCTTTCTCTCCCTCTTTATCTTT
GCAGAGTGCGTGGATATTCTTCAAGTATAAAACACATGGCCGACTACTTT
TAACATTATCAACAAGAGTCTTTAGGCGTTTCTCGGTAGCAGCAAAAGAT
TCTGACACAACATCCAGACAATTGACTTCAGTAAAGTGTAAACATTGATC
GAAACAAAACACTTGCAGGACAATTCCTTTACCATAACCTGTAGGTGCTT
CAACCAAAATGGCGGTATCAGCTGTGGAAACCTTTCCTGTTTTCAGCATA
CGCAAAGAATCTGTCAATTGATGTAAATAGCTTTGGTACGCCGAACGTAA
ATCTTTGGATAAAAACAGTTCGAATAAAAGAGGTCTATTTTTCACCATAC
ATCCACAAAACGGTATATAACTTTCGGTATTTTTCCCCAAAACTAATTCT
GTTTCCATACCAACAAATCTTCCATTGTTTTGGTGCACGTGACTCGTGTC
CTTGGCAACAAGGTTGTCAACACGAAACCAGAAAACAAAAGGTGTATCGC
GTGAGATCTTTTGATGCGATTGGACGAATATGGGAAAGATTTCTTTAGGT
GACATCAATCgacgtttttgaaaatgttcttttaaaagatcaTCCACAAG
GTTATCATTACAGTTACCATAAGGGCAATACAGTAAAGAAATTGTGGAAT
GACTTGCTGTGTACTTCTCCTTGTAAGTCGAGATATCACGCAATGTTTCA
AACGAAATTTCGATCTTCTGGTCATAATATTGTTTATACAATCCAGGAGA
ATGCGAAAGTATATTGAACAAATCAGAAGTTGAGACatagatgacgtcat
cggtgtaagatttttcttcatcaaaagaagaataaatgTTGACTTGTAAA
GGGTACCAGGTTTTTCGTTCCtcacatttttcaaacttttctttaaCAAT
ATTTTCTGACATAGTTAACAAAGAATCTACTCCATTATTTGACACAGTTT
TCTCCACAGAGATCCATTGCTTATTGAGCAGCTTCAGTGCACGTGCTGTG
CCAGTTGTGATAAAAGCAGAATGGTTGGTGTTCAGGTAAGGATCCACTTG
GAGTGAAATcatgtttgttttgtttgtttttctgc Coding sequence (CDS) from alignment at sc0000051:615622..618406 >TCONS_00005258 ID=TCONS_00005258|Name=TCONS_00005258|organism=Clytia hemisphaerica|type=CDS|length=2103bp|location=Sequence derived from alignment at sc0000051:615622..618406 (Clytia hemisphaerica) TTATCGAAACGCCCGGGNCAGTTTCAAACGCTCGTCCCGCCCTTCTGGTA TTCCTACGTAAACCAATTTATCGAAACGCCCGGGGCGTAAAAGGGCGGCG TCTAAGAGGTCAGGGCGGTTGGTGGCGGCAATGATGAAAACATTAGTATT ATCATGCATTCCATCGAGCTCCGATAAAAGTTGTGAAACGATCCGGTCCA TTACACCACCGGAATCGCCTGTCCGACCACGGTTCGGTGCCAGCGAGTCA ATCTCATCGAAGAAGACAACACACGGAGCCATTCTTCGAGCTGTTTTGAA CGTTTCTCTGACGTTCTCTTCACTCTGTCCAACATACATATTAATCAACT CGGGTCCTTTCACACTGTAAAAGTTCAAATTGAATTCAGTCGCTACAGCT TTTGCTAATAAAGTTTTCCCACATCCAGGAGGACCGTAAAAGAGTAACCC AGATCGTCTCATATTCTTACGGAACAAAGTCGGAAATTTCATGGGTAGCT CGATCGTATCGAAAATATCTTTTTTGACGTTCTCTAAACCGCCGACATCC TTCCACGTCACTTTTTGAACTTTGACGTTGGTCAGGGTGCCGGACTTTAC TGAGCGAACCTCATCGACTGCTTTTAGAAACAGTTCTTTGCATTCTGGGA TTGATATTTCATCTTCTCCTCCCTCTCCCGGGTGACGCTCTTCCAACATT TTACGAAAGAGGGGACTCGCTTTTCGAACAAGTTCAATTAGATCTGACAA AAAGAAACCACTCGTTTTCAGCGCGATTTCGTTGGCTTCCTTTAAACGAC AATTCAACAAAGTGTTCAAAATGTGTTTTCTTTCATCTGCGGATGGCGCG TCTAAGCAGAGGTGATACATGAACAGCGAGAAGAATCGAGCACTCATTTG ATTCACTTTATTTGTGCTTGCCACTAGCAAGAGAGGTAGTTCATGACAAT CAAGTTCTCGTAAAATATTTGCGAAATAGCTGACAAGTCTTCTCTCCTCT TTCTCTCCCTCTTTATCTTTGCAGAGTGCGTGGATATTCTTCAAGTATAA AACACATGGCCGACTACTTTTAACATTATCAACAAGAGTCTTTAGGCGTT TCTCGGTAGCAGCAAAAGATTCTGACACAACATCCAGACAATTGACTTCA GTAAAGTGTAAACATTGATCGAAACAAAACACTTGCAGGACAATTCCTTT ACCATAACCTGTAGGTGCTTCAACCAAAATGGCGGTATCAGCTGTGGAAA CCTTTCCTGTTTTCAGCATACGCAAAGAATCTGTCAATTGATGTAAATAG CTTTGGTACGCCGAACGTAAATCTTTGGATAAAAACAGTTCGAATAAAAG AGGTCTATTTTTCACCATACATCCACAAAACGGTATATAACTTTCGGTAT TTTTCCCCAAAACTAATTCTGTTTCCATACCAACAAATCTTCCATTGTTT TGGTGCACGTGACTCGTGTCCTTGGCAACAAGGTTGTCAACACGAAACCA GAAAACAAAAGGTGTATCGCGTGAGATCTTTTGATGCGATTGGACGAATA TGGGAAAGATTTCTTTAGGTGACATCAATCgacgtttttgaaaatgttct tttaaaagatcaTCCACAAGGTTATCATTACAGTTACCATAAGGGCAATA CAGTAAAGAAATTGTGGAATGACTTGCTGTGTACTTCTCCTTGTAAGTCG AGATATCACGCAATGTTTCAAACGAAATTTCGATCTTCTGGTCATAATAT TGTTTATACAATCCAGGAGAATGCGAAAGTATATTGAACAAATCAGAAGT TGAGACatagatgacgtcatcggtgtaagatttttcttcatcaaaagaag aataaatgTTGACTTGTAAAGGGTACCAGGTTTTTCGTTCCtcacatttt tcaaacttttctttaaCAATATTTTCTGACATAGTTAACAAAGAATCTAC TCCATTATTTGACACAGTTTTCTCCACAGAGATCCATTGCTTATTGAGCA GCTTCAGTGCACGTGCTGTGCCAGTTGTGATAAAAGCAGAATGGTTGGTG TTCAGGTAAGGATCCACTTGGAGTGAAATcatgtttgttttgtttgtttt tct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005258-exon-sc0000051-1491911889:615622..618406 | TCONS_00005258-exon-sc0000051-1491911889:615622..618406 | Clytia hemisphaerica | exon |
TCONS_00005258-exon-sc0000051-1510915933:615622..618406 | TCONS_00005258-exon-sc0000051-1510915933:615622..618406 | Clytia hemisphaerica | exon |
TCONS_00005258-exon-sc0000051-1575043694:615622..618406 | TCONS_00005258-exon-sc0000051-1575043694:615622..618406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000051 | supercontig | sc0000051:615622..618406 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00005258 vs. Swiss-Prot (Human)
Match: PEX6 (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2) HSP 1 Score: 342.043 bits (876), Expect = 2.141e-101 Identity = 223/588 (37.93%), Postives = 318/588 (54.08%), Query Frame = 3
Query: 444 ISLLYCPYGNCNDNLVDDLLKEHFQKRRLMSPKEIFPIFVQSHQKISRDTP--FVFW----FRVDNLVAK-----------DTSHVHQNNGRFVGMETELVLGKNTESYIPFCGCMVKNRPLLFELFLSKDLRSAYQSYLHQLTDSLRMLKTGKVSTADTAILVEAPTGYGKGIVLQVFCFDQCLHFTEVNCLDVVSESFAATEKRLKTLVDNVKSSRPCVLYLKNIHALCKDKEGEKEERRLVSYFANILRELD----CHELPLLLVASTNKVNQMSARFFSLFMYHLCLDAPSADERKHILNTLLNCRLKEANEI-----ALKTSGFFLSDLIELVR----------KASPLFRKMLEERHPGEGGEDEISIPECKELFLKAVDEVRSVKSGTLTNVKVQKVTWKDVGGLENVKKDIFDTIELPMKFPTLFRKNMRRSGLLFYGPPGCGKTLLAKAVATEFNLNFYSVKGPELINMYVGQSEENVRETFKTARRMAPCVVFFDEIDSLAPNRGRTGDSGGVMDRIVSQLLSELDGMHDNTNVFIIAATNRPDLLDAALLRPGRFDKLVYVGIPEGRDERLKLXRAF 2099
I ++ P+ + N N D +L HFQ R++ ++ + +I +P W F+V V + DT+H T L + +T S +P+ + L+ L + L R+ G + T +++L+ P G GK V+ C LH +V C + +ES A E +L+ + + RP VL L + L +D++G E+ R+++ ++L D C PL++VA+T++ + A + F + L + A S +R IL L L E+ A + +GF + DL L+ K S L + EE EG P E F +A++++++ S + K+ V+W DVGGL+ VKK+I +TI+LP++ P L +RRSGLL +GPPG GKTLLAKAVATE +L F SVKGPELINMYVGQSEENVRE F AR APC++FFDE+DSLAP+RGR+GDSGGVMDR+VSQLL+ELDG+H +VF+I ATNRPDLLD ALLRPGRFDKLV+VG E R +L++ A
Sbjct: 323 IEIVSSPHYSTNGN-YDGVLYRHFQIPRVVQEGDVLCVPTIGQVEILEGSPEKLPRWREMFFKVKKTVGEAPDGPASAYLADTTH------------TSLYMVGSTLSPVPW---LPSEESTLWSSLSPPGLEALVSELCAVLKP--RLQPGGALLTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRARRCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCP--PLMVVATTSRAQDLPADVQTAFPHELEVPALSEGQRLSILRAL-TAHLPLGQEVNLAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEED---EGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLSLGLRRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAI 886 HSP 2 Score: 88.9669 bits (219), Expect = 7.242e-18 Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 2089 PGRFDKLVYVGIPEGRNERLKLLRAVTQKIHLSPEISLEEIVEKLPANLTGADFKALASNAVMCCIKRMIIAHENQKIPLNVDQAIVSMEDFEEAITSCSPSVSIEELERYKSIQ 2433
PGRFDKLV+VG E R +L++L A+T+K L P +SL +++ P LTGAD +L S+A+ +KR + E P +++MED +A PSVS +EL RYK IQ
Sbjct: 861 PGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSLCSDAMTAALKRRVHDLEEGLEP-GSSALMLTMEDLLQAAARLQPSVSEQELLRYKRIQ 974
The following BLAST results are available for this feature:
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