TCONS_00005257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005257
Unique NameTCONS_00005257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005257 ID=TCONS_00005257|Name=TCONS_00005257|organism=Clytia hemisphaerica|type=transcript|length=1880bp
CAAAATGcgttttataatttttgaaattttaattaataaaaaatatttta
gtgtCGTTGAAAAAATACGAAATTTCACCCCATGAAAATATAAAGACTAT
CAATTATAAAGCATTTTAATGCTTTGGAATTTAAATCCTCTGTAATGTAT
GTTCAACAGAAAAGCTGAaagtgaaaagttttaaaaaccgAGAGggtact
tgaaaaaatttttaaatgttaAATTACGCACATTGTGTAAAATCAAATGA
ACAtataatgaaaatttaaaatgtgtTAAAATTGACTAAAAAGCAAATGA
TAAACAAGCACCAAATGTCAATCCCATTTGTAAAAATAATGACATCATTG
TTCCAGCAGTTTCTCCATACTCAAGTGCAACCATTTTTGGGCCATACATC
ATTCCTAAGCTTCCAAGATAGCCATTAGATACAGAAAAGAGAATATTAAT
AATGATAGGCCAAAAGTCATGGTTAAAGACATATGGCAGCACTCTATGTT
CATAATTACACATTAAGAATAATGGAATAAATACGATTCTGGAAATACAT
AGCACAATAAGCCATTTACTCTTTTCATTTACAATTTGAACGATTCCAGC
AAGGATCCTTCCAATCCAATCACCGACATTGAATACTAAGAAAACTACAA
GTGTTGCGAAAAGCTCGTTGTCCCATACTGATCCATTTCCCTTGTTTGTT
GAAGAAATACCAGCCATGATCGCAGGGAAACAGGTTAGTGTTATagcaaa
aacaatgaaaacagAAGCAGCTTTCCCAGAAATTGCCTTTAAGATAAGGA
CATATGGAATTTTCTCTACATTTGGAGTGTGGTTGGCAGTTTGACGATTT
TCAATATCTCGTTCGGTGTGCCTTTCAAACCTTCGGAAGTAGAACTGCAT
TCTTGGCAGTCTGAATAATGTAGAATATGCTATTCCAGTTATTATAATGA
AAGCTGAGGCGATAATGAAGTAAATCAGAGCACTGGTTGTGGGTTCCTTG
GCATAGTTTGGATTTGCAAGTTTTGTTGCCAAATCTGCAACTGCAGCAAA
TATACCAGCTGTAGCTTGACCACTCATAATAGCTTGCATATAGCGGGAAC
CAATTATACCAGCAATTCCAAATATTGTCCCTTGGAAAATACCAGTAGCA
AGATTCAGAATAGTGCATGTAGCAACTGTGATAGCAAAGAACATCGTAGG
TTTGTCTTGGGTGTCAACTTTGACCAAAACTGTTGTAGCAACAAATGCAA
GAAACATGACTGTTAAACTCAAAGTTAGTCGGAAATTTCTTGAGATACGG
CCTGTCATGAATATGTTGAAAAGTAAACTCAATACACCAGGAATCATAGC
TGCTAAAGCAAATGCGTTTTCAAATCTGTCTTGAAATGTAGCATTTTCCT
CAAACTTGTATGAAAAGTAACTCTTTGCGGTGATGAAAAAATTCCATGGT
AAAAGCATGCCAATTCCTTGAATGAAGAAAATGATATAGATCACATTTCC
TTTATCTTCAGGAGCGTTGAGACTAGCGCTCATGTCATCTGGGTCTGTGA
ATGATGATGCTGGTGGGGCTCCAGAACGTGTTTGGATTGAAGGAACTCGT
TCTTCTCCTCCAAGAAGCTCATCATCAGAGCTGATGGAGTCTTCTTCTGA
ATCATAAGAATCCATTGGCTTCAACAAACCTCTCTTTGCATTTGTGTCCA
TACCAGATTATATGAGTCTATCACAGAGACTAAGTCAAGTGAAAGGACAA
AGCTTCAGCTGACCCTCTGCTTGCCTCCTGgtatcaattttgtttgtaat
tttgtCACAAGACCATTTTTAAAGGGAAATTCCGTGGTCATTGCATTTTA
TATAAATTATCTCTTGTTTCTAATTTACGG
Run BLAST on NCBI

protein sequence of TCONS_00005257-protein

>TCONS_00005257-protein ID=TCONS_00005257-protein|Name=TCONS_00005257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MDTNAKRGLLKPMDSYDSEEDSISSDDELLGGEERVPSIQTRSGAPPASS
FTDPDDMSASLNAPEDKGNVIYIIFFIQGIGMLLPWNFFITAKSYFSYKF
EENATFQDRFENAFALAAMIPGVLSLLFNIFMTGRISRNFRLTLSLTVMF
LAFVATTVLVKVDTQDKPTMFFAITVATCTILNLATGIFQGTIFGIAGII
GSRYMQAIMSGQATAGIFAAVADLATKLANPNYAKEPTTSALIYFIIASA
FIIITGIAYSTLFRLPRMQFYFRRFERHTERDIENRQTANHTPNVEKIPY
VLILKAISGKAASVFIVFAITLTCFPAIMAGISSTNKGNGSVWDNELFAT
LVVFLVFNVGDWIGRILAGIVQIVNEKSKWLIVLCISRIVFIPLFLMCNY
EHRVLPYVFNHDFWPIIINILFSVSNGYLGSLGMMYGPKMVALEYGETAG
TMMSLFLQMGLTFGACLSFAF
Run BLAST on NCBI

transcript from alignment at sc0000051:600372..602251

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005257 ID=TCONS_00005257|Name=TCONS_00005257|organism=Clytia hemisphaerica|type=transcript|length=1880bp|location=Sequence derived from alignment at sc0000051:600372..602251 (Clytia hemisphaerica)
CCGTAAATTAGAAACAAGAGATAATTTATATAAAATGCAATGACCACGGA
ATTTCCCTTTAAAAATGGTCTTGTGacaaaattacaaacaaaattgatac
CAGGAGGCAAGCAGAGGGTCAGCTGAAGCTTTGTCCTTTCACTTGACTTA
GTCTCTGTGATAGACTCATATAATCTGGTATGGACACAAATGCAAAGAGA
GGTTTGTTGAAGCCAATGGATTCTTATGATTCAGAAGAAGACTCCATCAG
CTCTGATGATGAGCTTCTTGGAGGAGAAGAACGAGTTCCTTCAATCCAAA
CACGTTCTGGAGCCCCACCAGCATCATCATTCACAGACCCAGATGACATG
AGCGCTAGTCTCAACGCTCCTGAAGATAAAGGAAATGTGATCTATATCAT
TTTCTTCATTCAAGGAATTGGCATGCTTTTACCATGGAATTTTTTCATCA
CCGCAAAGAGTTACTTTTCATACAAGTTTGAGGAAAATGCTACATTTCAA
GACAGATTTGAAAACGCATTTGCTTTAGCAGCTATGATTCCTGGTGTATT
GAGTTTACTTTTCAACATATTCATGACAGGCCGTATCTCAAGAAATTTCC
GACTAACTTTGAGTTTAACAGTCATGTTTCTTGCATTTGTTGCTACAACA
GTTTTGGTCAAAGTTGACACCCAAGACAAACCTACGATGTTCTTTGCTAT
CACAGTTGCTACATGCACTATTCTGAATCTTGCTACTGGTATTTTCCAAG
GGACAATATTTGGAATTGCTGGTATAATTGGTTCCCGCTATATGCAAGCT
ATTATGAGTGGTCAAGCTACAGCTGGTATATTTGCTGCAGTTGCAGATTT
GGCAACAAAACTTGCAAATCCAAACTATGCCAAGGAACCCACAACCAGTG
CTCTGATTTACTTCATTATCGCCTCAGCTTTCATTATAATAACTGGAATA
GCATATTCTACATTATTCAGACTGCCAAGAATGCAGTTCTACTTCCGAAG
GTTTGAAAGGCACACCGAACGAGATATTGAAAATCGTCAAACTGCCAACC
ACACTCCAAATGTAGAGAAAATTCCATATGTCCTTATCTTAAAGGCAATT
TCTGGGAAAGCTGCTTctgttttcattgtttttgctATAACACTAACCTG
TTTCCCTGCGATCATGGCTGGTATTTCTTCAACAAACAAGGGAAATGGAT
CAGTATGGGACAACGAGCTTTTCGCAACACTTGTAGTTTTCTTAGTATTC
AATGTCGGTGATTGGATTGGAAGGATCCTTGCTGGAATCGTTCAAATTGT
AAATGAAAAGAGTAAATGGCTTATTGTGCTATGTATTTCCAGAATCGTAT
TTATTCCATTATTCTTAATGTGTAATTATGAACATAGAGTGCTGCCATAT
GTCTTTAACCATGACTTTTGGCCTATCATTATTAATATTCTCTTTTCTGT
ATCTAATGGCTATCTTGGAAGCTTAGGAATGATGTATGGCCCAAAAATGG
TTGCACTTGAGTATGGAGAAACTGCTGGAACAATGATGTCATTATTTTTA
CAAATGGGATTGACATTTGGTGCTTGTTTATCATTTGCTTTTTAGTCAAT
TTTAacacattttaaattttcattataTGTTCATTTGATTTTACACAATG
TGCGTAATTtaacatttaaaaattttttcaagtaccCTCTcggtttttaa
aacttttcacttTCAGCTTTTCTGTTGAACATACATTACAGAGGATTTAA
ATTCCAAAGCATTAAAATGCTTTATAATTGATAGTCTTTATATTTTCATG
GGGTGAAATTTCGTATTTTTTCAACGacactaaaatattttttattaatt
aaaatttcaaaaattataaaacgCATTTTG

Coding sequence (CDS) from alignment at sc0000051:600372..602251

>TCONS_00005257 ID=TCONS_00005257|Name=TCONS_00005257|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000051:600372..602251 (Clytia hemisphaerica)
ATGGACACAAATGCAAAGAGAGGTTTGTTGAAGCCAATGGATTCTTATGA
TTCAGAAGAAGACTCCATCAGCTCTGATGATGAGCTTCTTGGAGGAGAAG
AACGAGTTCCTTCAATCCAAACACGTTCTGGAGCCCCACCAGCATCATCA
TTCACAGACCCAGATGACATGAGCGCTAGTCTCAACGCTCCTGAAGATAA
AGGAAATGTGATCTATATCATTTTCTTCATTCAAGGAATTGGCATGCTTT
TACCATGGAATTTTTTCATCACCGCAAAGAGTTACTTTTCATACAAGTTT
GAGGAAAATGCTACATTTCAAGACAGATTTGAAAACGCATTTGCTTTAGC
AGCTATGATTCCTGGTGTATTGAGTTTACTTTTCAACATATTCATGACAG
GCCGTATCTCAAGAAATTTCCGACTAACTTTGAGTTTAACAGTCATGTTT
CTTGCATTTGTTGCTACAACAGTTTTGGTCAAAGTTGACACCCAAGACAA
ACCTACGATGTTCTTTGCTATCACAGTTGCTACATGCACTATTCTGAATC
TTGCTACTGGTATTTTCCAAGGGACAATATTTGGAATTGCTGGTATAATT
GGTTCCCGCTATATGCAAGCTATTATGAGTGGTCAAGCTACAGCTGGTAT
ATTTGCTGCAGTTGCAGATTTGGCAACAAAACTTGCAAATCCAAACTATG
CCAAGGAACCCACAACCAGTGCTCTGATTTACTTCATTATCGCCTCAGCT
TTCATTATAATAACTGGAATAGCATATTCTACATTATTCAGACTGCCAAG
AATGCAGTTCTACTTCCGAAGGTTTGAAAGGCACACCGAACGAGATATTG
AAAATCGTCAAACTGCCAACCACACTCCAAATGTAGAGAAAATTCCATAT
GTCCTTATCTTAAAGGCAATTTCTGGGAAAGCTGCTTctgttttcattgt
ttttgctATAACACTAACCTGTTTCCCTGCGATCATGGCTGGTATTTCTT
CAACAAACAAGGGAAATGGATCAGTATGGGACAACGAGCTTTTCGCAACA
CTTGTAGTTTTCTTAGTATTCAATGTCGGTGATTGGATTGGAAGGATCCT
TGCTGGAATCGTTCAAATTGTAAATGAAAAGAGTAAATGGCTTATTGTGC
TATGTATTTCCAGAATCGTATTTATTCCATTATTCTTAATGTGTAATTAT
GAACATAGAGTGCTGCCATATGTCTTTAACCATGACTTTTGGCCTATCAT
TATTAATATTCTCTTTTCTGTATCTAATGGCTATCTTGGAAGCTTAGGAA
TGATGTATGGCCCAAAAATGGTTGCACTTGAGTATGGAGAAACTGCTGGA
ACAATGATGTCATTATTTTTACAAATGGGATTGACATTTGGTGCTTGTTT
ATCATTTGCTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002998XLOC_002998Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005257-proteinTCONS_00005257-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005257-exon-sc0000051-1491911889:600372..602251TCONS_00005257-exon-sc0000051-1491911889:600372..602251Clytia hemisphaericaexon
TCONS_00005257-exon-sc0000051-1510915933:600372..602251TCONS_00005257-exon-sc0000051-1510915933:600372..602251Clytia hemisphaericaexon
TCONS_00005257-exon-sc0000051-1575043694:600372..602251TCONS_00005257-exon-sc0000051-1575043694:600372..602251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:600372..602251 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.6603	18.7992	8.48588	6.18543	15.5471	10.0682	18.1521	20.1625	23.6881	20.8538	24.0055	23.4724	20.3757	24.6211	21.5921	26.4708	18.2016	18.4927	20.4931	19.0356	18.3723	19.3446	72.8846	63.3413	17.0509	21.0359	19.156	17.2747	43.3365	50.6595
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002259Eqnu_transpt
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005337nucleoside transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005337 nucleoside transmembrane transporter activity
Blast
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BLAST of TCONS_00005257 vs. Swiss-Prot (Human)
Match: S29A3 (Equilibrative nucleoside transporter 3 OS=Homo sapiens GN=SLC29A3 PE=1 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 8.980e-69
Identity = 164/460 (35.65%), Postives = 235/460 (51.09%), Query Frame = -3 
Query:  241 DDMSASLNAPEDKGNVIYIIFFIQGIGMLLPWNFFITAKSYFSYKFE-----------ENATFQDRFENAFALAAMIPGVLSLLFNIFMTGRISRNFRLTLSLTVMFLAFVATTVLVKVDTQDKPTMFFAITVATCTILNLATGIFQGTIFGIAGIIGSRYMQAIMSGQATAGIFAAVADLATKLANPNYAKEPTTSXXXXXXXXXXXXXXXXXAYSTLFRLPRMQFYFRRF--------ERHTERD------IENRQTANHTPNVEKIPYVLILKAISGKAASVFIVFAITLTCFPAIMAGISSTNKGNGSVWDNELFATLVVFLVFNVGDWIGRILAGIVQIVNEKSKWLIVLCISRIVFIPLFLMCNYEHRV--LPYVFNHDFWPIIINILFSVSNGYLGSLGMMYGPKMVALEYGETAGTMMSLFLQMGLTFGACLSFAF*SILTHFKFSLYVHLI 1539
            D     L  PED+    YIIFF  GIG LLPWNFFITAK Y+ +K             E +   + FE+  A+A+ +P +L L+ N  +  R++ + R+  SLTV+   F+  T LVKVDT      FFA+T+    IL+ A+ +F  +I+G+ G    R  QA++SG A  G  +AVA L    A+ +       SAL +F+ A+ F+++    Y  L RL   ++Y R          E    +D      + +R   +HTP     P   ILK  +     V  VF IT   +PAI   I S NKG+GS+W  + F  L  FL++N  D  GR L   +Q+    SK L    + R   IPLF++CNY+ RV     VF  D +P +++ L  +SNGYL +L ++YGPK+V  E  E  G +MS ++ +GLT G+  S            +L VHLI
Sbjct:   37 DRPPPGLQRPEDRFCGTYIIFFSLGIGSLLPWNFFITAKEYWMFKLRNSSSPATGEDPEGSDILNYFESYLAVASTVPSMLCLVANFLLVNRVAVHIRVLASLTVILAIFMVITALVKVDTSSWTRGFFAVTIVCMVILSGASTVFSSSIYGMTGSFPMRNSQALISGGAMGGTVSAVASLVDLAASSDVRN----SALAFFLTATVFLVLCMGLYLLLSRLEYARYYMRPVLAAHVFSGEEELPQDSLSAPSVASRFIDSHTP-----PLRPILKKTASLGFCVTYVFFITSLIYPAICTNIESLNKGSGSLWTTKFFIPLTTFLLYNFADLCGRQLTAWIQVPGPNSKALPGFVLLRTCLIPLFVLCNYQPRVHLKTVVFQSDVYPALLSSLLGLSNGYLSTLALLYGPKIVPRELAEATGVVMSFYVCLGLTLGSACS------------TLLVHLI 475
The following BLAST results are available for this feature:
BLAST of TCONS_00005257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S29A38.980e-6935.65Equilibrative nucleoside transporter 3 OS=Homo sap... [more]
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