TCONS_00005250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005250
Unique NameTCONS_00005250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005250 ID=TCONS_00005250|Name=TCONS_00005250|organism=Clytia hemisphaerica|type=transcript|length=274bp
CTTCAGAGTTGCAGTTTTCGACTTACAACTAGTGATAAGATTTGAGAGCG
AAAATTTCATAGATTGAAATCCAGTCCTAATCTCAAGGTTTACagaaaaa
agcctaaattttcaaacattcaaaGGTTAGTCCAGTCCCGTAAAACCTAA
ATAAGCTCAGAAATATGAACCACCTTAGAGATTTTTTGGTTCAAATCAAC
TCGccaaagcaattttttttcgttcgagacggaaaatggattttacacag
cagattagtctgaatcgcagacct
Run BLAST on NCBI

transcript from alignment at sc0000051:365660..365933

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005250 ID=TCONS_00005250|Name=TCONS_00005250|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0000051:365660..365933 (Clytia hemisphaerica)
aggtctgcgattcagactaatctgctgtgtaaaatccattttccgtctcg
aacgaaaaaaaattgctttggCGAGTTGATTTGAACCAAAAAATCTCTAA
GGTGGTTCATATTTCTGAGCTTATTTAGGTTTTACGGGACTGGACTAACC
tttgaatgtttgaaaatttaggcttttttctGTAAACCTTGAGATTAGGA
CTGGATTTCAATCTATGAAATTTTCGCTCTCAAATCTTATCACTAGTTGT
AAGTCGAAAACTGCAACTCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002991XLOC_002991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005250-exon-sc0000051-1491911889:365660..365933TCONS_00005250-exon-sc0000051-1491911889:365660..365933Clytia hemisphaericaexon
TCONS_00005250-exon-sc0000051-1510915933:365660..365933TCONS_00005250-exon-sc0000051-1510915933:365660..365933Clytia hemisphaericaexon
TCONS_00005250-exon-sc0000051-1575043694:365660..365933TCONS_00005250-exon-sc0000051-1575043694:365660..365933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:365660..365933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.606745	1.18721	0	0	0	0	0	2.23738	0.542913	0.713779	0.356393	0	0.608575	1.30619	0.402279	0.824646	0	0	0.518114	0	0	0	0	0	0.73479	0	0.594779	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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