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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005245 ID=TCONS_00005245|Name=TCONS_00005245|organism=Clytia hemisphaerica|type=transcript|length=1264bp
AAtttcgcaaaaaataatgaaaagcatcgaaaaatattatgaaaacaaag
aagCTGCGTGGCAATAATCTACTTTAATCTGAGTGtttgtttcttctttc
ttttatgAGTTTGAATAGAAAGTTTGAGTCTTGGATTACAATACTGAGGA
AAGCTGTATTTTGAGAGTcggtgaaaataatttttgaagaacAGATAGAT
AAAAATTATCAGTACAAGGAGAACAGAAAACAACAGAAAATGGCAGAACC
GATCGACTACATCGAAGGAGCGTCCATTTTAAAAACAGTGAAATATATTT
CCAAATGGAAGCAGTTGATCGACAAGAAGCGACAATCAACTTGTTACTCT
GATGATTTCGACGCCAGCGAAAGCGAAGCGGATCAGCCAACGGAACAGGA
AATGATCGAGTTTTTTCAGACCTTCAAGAAAGAATTATTTCAAAGACAAC
AAGGTGATGTGGTGACCAACGCAATTGGCGAAGAAGAAGTTTTAAAGGAA
AAGGAAGATGTTGATATGCTGCAAGTTGAAGATTTAATCCGTGATAAGGG
CTCCAGGCACGGCCGCGCGCGTGCAAATTCAACTTTTCAGACGGTCAAAT
ATATCGGCCGCTGGATGCGAGCAGTCGATAAAAAGTCTAAAGAGCCGGGA
GCCGAGATGGACATTTTGGATGAAGAAGAAGACGAGGCAGACGAGGAAGA
AGTAGTTCGCTATTTCCGCTCGCTCGAACTGGATGATGCGCCAAATACGA
AGAATTCGTTATCGACACCAGAGGCGGTGGAGGGTGGAGGAGAGTTGGCG
GGCGAGAAGCGAGATGTGGTATTGAACACAGTTCGTTTCATCGTGCGATG
GATGGATCGAGTGGAAGCGGACAAAAAGAAAACGAGGAATAACtctttct
aaaaaagaaagattttttttaaagatatggaacaagtcttttttttaaat
gacagtATACTCTGATATGGAGAAAACCTCAAAAGGCAACTTGTTATTGA
GAAATACAAACGAATcagtatttttttgattttataagaaatttcattat
tcaGTTATGTAGAGCTTTTGTCGATTAATGAAATATGTAAAGTAAAGCGA
AAGAAACTTTacaatttttcttgaaattttactGAAAACTACATTGAACG
GGACAAATTTAGGCCTGCTGGGATACCACTGAGAAGttgttgcaaaattt
caatcCTTTTCAACTATTGTTTGATATTTCAAAaggtgaaaaataaattt
ttaagcaatctgTC Run BLAST on NCBI protein sequence of TCONS_00005245-protein >TCONS_00005245-protein ID=TCONS_00005245-protein|Name=TCONS_00005245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MAEPIDYIEGASILKTVKYISKWKQLIDKKRQSTCYSDDFDASESEADQP
TEQEMIEFFQTFKKELFQRQQGDVVTNAIGEEEVLKEKEDVDMLQVEDLI
RDKGSRHGRARANSTFQTVKYIGRWMRAVDKKSKEPGAEMDILDEEEDEA
DEEEVVRYFRSLELDDAPNTKNSLSTPEAVEGGGELAGEKRDVVLNTVRF
IVRWMDRVEADKKKTRNNSF Run BLAST on NCBI transcript from alignment at sc0000051:225747..227010 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005245 ID=TCONS_00005245|Name=TCONS_00005245|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at sc0000051:225747..227010 (Clytia hemisphaerica)
GAcagattgcttaaaaatttatttttcacctTTTGAAATATCAAACAATA
GTTGAAAAGgattgaaattttgcaacaaCTTCTCAGTGGTATCCCAGCAG
GCCTAAATTTGTCCCGTTCAATGTAGTTTTCagtaaaatttcaagaaaaa
ttgtAAAGTTTCTTTCGCTTTACTTTACATATTTCATTAATCGACAAAAG
CTCTACATAACtgaataatgaaatttcttataaaatcaaaaaaatactgA
TTCGTTTGTATTTCTCAATAACAAGTTGCCTTTTGAGGTTTTCTCCATAT
CAGAGTATactgtcatttaaaaaaaagacttgttccatatctttaaaaaa
aatctttcttttttagaaagaGTTATTCCTCGTTTTCTTTTTGTCCGCTT
CCACTCGATCCATCCATCGCACGATGAAACGAACTGTGTTCAATACCACA
TCTCGCTTCTCGCCCGCCAACTCTCCTCCACCCTCCACCGCCTCTGGTGT
CGATAACGAATTCTTCGTATTTGGCGCATCATCCAGTTCGAGCGAGCGGA
AATAGCGAACTACTTCTTCCTCGTCTGCCTCGTCTTCTTCTTCATCCAAA
ATGTCCATCTCGGCTCCCGGCTCTTTAGACTTTTTATCGACTGCTCGCAT
CCAGCGGCCGATATATTTGACCGTCTGAAAAGTTGAATTTGCACGCGCGC
GGCCGTGCCTGGAGCCCTTATCACGGATTAAATCTTCAACTTGCAGCATA
TCAACATCTTCCTTTTCCTTTAAAACTTCTTCTTCGCCAATTGCGTTGGT
CACCACATCACCTTGTTGTCTTTGAAATAATTCTTTCTTGAAGGTCTGAA
AAAACTCGATCATTTCCTGTTCCGTTGGCTGATCCGCTTCGCTTTCGCTG
GCGTCGAAATCATCAGAGTAACAAGTTGATTGTCGCTTCTTGTCGATCAA
CTGCTTCCATTTGGAAATATATTTCACTGTTTTTAAAATGGACGCTCCTT
CGATGTAGTCGATCGGTTCTGCCATTTTCTGTTGTTTTCTGTTCTCCTTG
TACTGATAATTTTTATCTATCTgttcttcaaaaattattttcaccgACTC
TCAAAATACAGCTTTCCTCAGTATTGTAATCCAAGACTCAAACTTTCTAT
TCAAACTcataaaagaaagaagaaacaaaCACTCAGATTAAAGTAGATTA
TTGCCACGCAGcttctttgttttcataatatttttcgatgcttttcatta
ttttttgcgaaaTT Coding sequence (CDS) from alignment at sc0000051:225747..227010 >TCONS_00005245 ID=TCONS_00005245|Name=TCONS_00005245|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0000051:225747..227010 (Clytia hemisphaerica)
ttagaaagaGTTATTCCTCGTTTTCTTTTTGTCCGCTTCCACTCGATCCA
TCCATCGCACGATGAAACGAACTGTGTTCAATACCACATCTCGCTTCTCG
CCCGCCAACTCTCCTCCACCCTCCACCGCCTCTGGTGTCGATAACGAATT
CTTCGTATTTGGCGCATCATCCAGTTCGAGCGAGCGGAAATAGCGAACTA
CTTCTTCCTCGTCTGCCTCGTCTTCTTCTTCATCCAAAATGTCCATCTCG
GCTCCCGGCTCTTTAGACTTTTTATCGACTGCTCGCATCCAGCGGCCGAT
ATATTTGACCGTCTGAAAAGTTGAATTTGCACGCGCGCGGCCGTGCCTGG
AGCCCTTATCACGGATTAAATCTTCAACTTGCAGCATATCAACATCTTCC
TTTTCCTTTAAAACTTCTTCTTCGCCAATTGCGTTGGTCACCACATCACC
TTGTTGTCTTTGAAATAATTCTTTCTTGAAGGTCTGAAAAAACTCGATCA
TTTCCTGTTCCGTTGGCTGATCCGCTTCGCTTTCGCTGGCGTCGAAATCA
TCAGAGTAACAAGTTGATTGTCGCTTCTTGTCGATCAACTGCTTCCATTT
GGAAATATATTTCACTGTTTTTAAAATGGACGCTCCTTCGATGTAGTCGA
TCGGTTCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005245-exon-sc0000051-1491911889:225747..227010 | TCONS_00005245-exon-sc0000051-1491911889:225747..227010 | Clytia hemisphaerica | exon |
| TCONS_00005245-exon-sc0000051-1510915933:225747..227010 | TCONS_00005245-exon-sc0000051-1510915933:225747..227010 | Clytia hemisphaerica | exon |
| TCONS_00005245-exon-sc0000051-1575043694:225747..227010 | TCONS_00005245-exon-sc0000051-1575043694:225747..227010 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:225747..227010 . |
Blast
The following BLAST results are available for this feature:
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