TCONS_00005244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005244
Unique NameTCONS_00005244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005244 ID=TCONS_00005244|Name=TCONS_00005244|organism=Clytia hemisphaerica|type=transcript|length=1122bp
ttcttatttggttaaagggaatttccccaaaaatacgaaaatccgttttt
taaggcgaataagaattttccgggaaaaaccacttcagccattctttaga
gaatcatgccctccatctttgtacaaaaaatcagaaaaaagtaatgacag
gattttgtccaaaaaaccctatttttaggtagtttttggcccaaatttgc
ccaggTAGGTTTTGTGAGGTGGGTCCAAAaatttatcaagaatttttcga
tgataaaattaattttatgtAGGTATAAAAATCATCATACTGTACAGTAA
TAATGTCAAATAACCTTCTATAAAAGCATTGTTAAACTCTAttaatttca
ttgaatttttccaaaaagtcttaattaaaaagaaactcaGTTGGTGCTAC
TCTCCAGAGCAGGTGCTACTCCCCTTTTTTACTTTATAAATGCATCTTTG
AGCCAAAGAGTggaaattttgaacaattttttctAATACAGAAGAAAAAG
TGAATTTACTAAAAATTTACGTAAtattctaaataaataaattgaaattc
gAATACGTTTCCCAACGAAACAGATTGTAAGCACCATTCACCAGGCtgga
caattttcaaaacaaaatgttccATTCCATTCTGTGATTTTCACTGCAGG
AACAATATGTTAAAAGCCATAGCTAAGCAACATACAGCAACATAAGGACT
TTTGCGTTCACCAATTCTTGCACATTTCCAAAAGATGCCAGGAAGACCGG
TCTTGTAGCGATCCAAAATACTTGGCATCACAGCATGGATATAGGTGCAC
ATGCAAATCAGGAGTAATACCACACTCAAaagacttgaaaaatcaaagat
tgcactcatttttcttatattatTTTTCTCAGATTGCTGTTTAAtttctg
aaagaagaaaaaaacactaTGATAAATATTCCATGTTTGTTTTCTGCAag
taatttccaaaattttttattttgaaacgtTTGTTGAAAAGTTTGTGAAg
cgcttttttccaaaatggaaTGTTGAAGGAAACTAGTTTTTCCACTCGCA
AGCTGTAATGAGAGCAAGAagaaaattcaacaaattcgacaaatttgact
TTTGCACTGATTATAAAATCTT
Run BLAST on NCBI

transcript from alignment at sc0000051:209886..211007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005244 ID=TCONS_00005244|Name=TCONS_00005244|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at sc0000051:209886..211007 (Clytia hemisphaerica)
AAGATTTTATAATCAGTGCAAAagtcaaatttgtcgaatttgttgaattt
tctTCTTGCTCTCATTACAGCTTGCGAGTGGAAAAACTAGTTTCCTTCAA
CAttccattttggaaaaaagcgcTTCACAAACTTTTCAACAAacgtttca
aaataaaaaattttggaaattactTGCAGAAAACAAACATGGAATATTTA
TCAtagtgtttttttcttctttcagaaaTTAAACAGCAATCTGAGAAAAa
taatataagaaaaatgagtgcaatctttgatttttcaagtcttTTGAGTG
TGGTATTACTCCTGATTTGCATGTGCACCTATATCCATGCTGTGATGCCA
AGTATTTTGGATCGCTACAAGACCGGTCTTCCTGGCATCTTTTGGAAATG
TGCAAGAATTGGTGAACGCAAAAGTCCTTATGTTGCTGTATGTTGCTTAG
CTATGGCTTTTAACATATTGTTCCTGCAGTGAAAATCACAGAATGGAATg
gaacattttgttttgaaaattgtccaGCCTGGTGAATGGTGCTTACAATC
TGTTTCGTTGGGAAACGTATTcgaatttcaatttatttatttagaataTT
ACGTAAATTTTTAGTAAATTCACTTTTTCTTCTGTATTagaaaaaattgt
tcaaaatttccACTCTTTGGCTCAAAGATGCATTTATAAAGTAAAAAAGG
GGAGTAGCACCTGCTCTGGAGAGTAGCACCAACtgagtttctttttaatt
aagactttttggaaaaattcaatgaaattaaTAGAGTTTAACAATGCTTT
TATAGAAGGTTATTTGACATTATTACTGTACAGTATGATGATTTTTATAC
CTacataaaattaattttatcatcgaaaaattcttgataaattTTTGGAC
CCACCTCACAAAACCTAcctgggcaaatttgggccaaaaactacctaaaa
atagggttttttggacaaaatcctgtcattacttttttctgattttttgt
acaaagatggagggcatgattctctaaagaatggctgaagtggtttttcc
cggaaaattcttattcgccttaaaaaacggattttcgtatttttggggaa
attccctttaaccaaataagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002985XLOC_002985Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005244-exon-sc0000051-1491911889:209886..211007TCONS_00005244-exon-sc0000051-1491911889:209886..211007Clytia hemisphaericaexon
TCONS_00005244-exon-sc0000051-1510915933:209886..211007TCONS_00005244-exon-sc0000051-1510915933:209886..211007Clytia hemisphaericaexon
TCONS_00005244-exon-sc0000051-1575043694:209886..211007TCONS_00005244-exon-sc0000051-1575043694:209886..211007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:209886..211007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.9235	69.7493	45.6511	43.6773	6.87538	6.10434	11.6305	13.3667	18.8781	16.0402	14.5451	13.9071	9.69648	8.41546	11.7964	10.7513	17.4349	12.1381	7.011	11.5358	14.91	13.0821	35.7557	33.9701	8.32285	8.3598	26.9854	26.3787	32.6967	28.5393
Blast
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BLAST of TCONS_00005244 vs. Swiss-Prot (Human)
Match: KISHA (Protein kish-A OS=Homo sapiens GN=TMEM167A PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.467e-27
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = -3 
Query:  644 MSAIFDFXXXXXXXXXLICMCTYIHAVMPSILDRYKTGLPGIFWKCARIGERKSPYVAVCCLAMAFNILFLQ 859
            MSAIF+F SLL+V+LLLIC C YI ++ PS+LDR KTGL GIFWKCARIGERKSPYVAVCC+ MAF+ILF+Q
Sbjct:    1 MSAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARIGERKSPYVAVCCIVMAFSILFIQ 72
The following BLAST results are available for this feature:
BLAST of TCONS_00005244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KISHA3.467e-2776.39Protein kish-A OS=Homo sapiens GN=TMEM167A PE=1 SV... [more]
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