|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005241 ID=TCONS_00005241|Name=TCONS_00005241|organism=Clytia hemisphaerica|type=transcript|length=1165bp
CTTTGCTCAAACTGCTTAAGAAAGCttggaagaaaaacaaaacaatgcgA
GATTTTATTCGAAAGGAAGTTGACGAGGTGAAGAAAGATGAAACGTGGTT
TAAAGCGCCTGCGCAGAAAGTGATGTTGAAATCCAATTGGGGTGTACCGT
TGGTGGCCAGCGAAAACTCCGTCGAATTTTTACGGTTCCCGACTAACGAT
ATCTGTCTTGGCAAATTTAATAGCGAAGCGGTCAGCTATTATTGGTTACC
AATGTGGCATGATTGGGACAACGAGACTTTGGTGTTATCCAAGACTCGAC
TCGATGATTCAGTTGAATACAAAGAAAagtattacgtcactttcgaacAA
ACTGTGGGTGGAAAGAAAGAACGTCTCCGTATTGAACCAGCGTTGGAGAG
ATTCGAGCCGAGCTGTGAGGATCAAGAGCGAGAACAGTTTAGAAAAGACT
CATATTTTGCATACCGTGAAGTGAGAAAAGATGGCAGATGGTTCGTACCG
TTGGAAAACATGCCTGAAGAGTACGGGATAGCCAGGGAGGAGTTGAGGGA
GATCTGCGAAATATTTGCTCCAATCAACGAGGACGAAGACAGTGATNTGG
GGTAGCCAGGGAGCAGTTGAGGGAGATCCGCGAAATATTTGCTCCAGTCA
ACGAGGACGAAGACAGTGATTCTGACTGAATTTGACGAAGACAATTTATT
CGCATACTAATTTTGCAGAACACGAAGTGGAATATTGAACAATATTTAAA
GACTATTTTGACAAACTCCGGCTTTCGGAACATGAAGCTTTTTGTTATAC
GTTAtatgaggcccccccccccagcggacccaaatttcacgcattcacgc
aaaaaattttcgcaattcacgcattcacgcaagtttttctcgaaattcac
gtaaacccaattttttgggaagtcggggaaattttcggaaaaaatcgggg
aaaatgtcaaaaatagaggtctcGCACATCtcgctaagttacgtaattta
cgtaatttccgccattatggagtaaaacgttcgatttgcataaaaaagta
tgacaaggctgtagacaaggctgtactcgagatattattcgaccggatct
ggtcatgcacttgagaaaaacttaactcagtagtgattttttcctgtaga
cctgactataaaaca Run BLAST on NCBI protein sequence of TCONS_00005241-protein >TCONS_00005241-protein ID=TCONS_00005241-protein|Name=TCONS_00005241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
LLKLLKKAWKKNKTMRDFIRKEVDEVKKDETWFKAPAQKVMLKSNWGVPL
VASENSVEFLRFPTNDICLGKFNSEAVSYYWLPMWHDWDNETLVLSKTRL
DDSVEYKEKYYVTFEQTVGGKKERLRIEPALERFEPSCEDQEREQFRKDS
YFAYREVRKDGRWFVPLENMPEEYGIAREELREICEIFAPINEDEDSDXG Run BLAST on NCBI transcript from alignment at sc0000051:51831..52995 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005241 ID=TCONS_00005241|Name=TCONS_00005241|organism=Clytia hemisphaerica|type=transcript|length=1165bp|location=Sequence derived from alignment at sc0000051:51831..52995 (Clytia hemisphaerica)
tgttttatagtcaggtctacaggaaaaaatcactactgagttaagttttt
ctcaagtgcatgaccagatccggtcgaataatatctcgagtacagccttg
tctacagccttgtcatacttttttatgcaaatcgaacgttttactccata
atggcggaaattacgtaaattacgtaacttagcgaGATGTGCgagacctc
tatttttgacattttccccgattttttccgaaaatttccccgacttccca
aaaaattgggtttacgtgaatttcgagaaaaacttgcgtgaatgcgtgaa
ttgcgaaaattttttgcgtgaatgcgtgaaatttgggtccgctggggggg
ggggcctcataTAACGTATAACAAAAAGCTTCATGTTCCGAAAGCCGGAG
TTTGTCAAAATAGTCTTTAAATATTGTTCAATATTCCACTTCGTGTTCTG
CAAAATTAGTATGCGAATAAATTGTCTTCGTCAAATTCAGTCAGAATCAC
TGTCTTCGTCCTCGTTGACTGGAGCAAATATTTCGCGGATCTCCCTCAAC
TGCTCCCTGGCTACCCCANATCACTGTCTTCGTCCTCGTTGATTGGAGCA
AATATTTCGCAGATCTCCCTCAACTCCTCCCTGGCTATCCCGTACTCTTC
AGGCATGTTTTCCAACGGTACGAACCATCTGCCATCTTTTCTCACTTCAC
GGTATGCAAAATATGAGTCTTTTCTAAACTGTTCTCGCTCTTGATCCTCA
CAGCTCGGCTCGAATCTCTCCAACGCTGGTTCAATACGGAGACGTTCTTT
CTTTCCACCCACAGTTTgttcgaaagtgacgtaatactTTTCTTTGTATT
CAACTGAATCATCGAGTCGAGTCTTGGATAACACCAAAGTCTCGTTGTCC
CAATCATGCCACATTGGTAACCAATAATAGCTGACCGCTTCGCTATTAAA
TTTGCCAAGACAGATATCGTTAGTCGGGAACCGTAAAAATTCGACGGAGT
TTTCGCTGGCCACCAACGGTACACCCCAATTGGATTTCAACATCACTTTC
TGCGCAGGCGCTTTAAACCACGTTTCATCTTTCTTCACCTCGTCAACTTC
CTTTCGAATAAAATCTcgcattgttttgtttttcttccaaGCTTTCTTAA
GCAGTTTGAGCAAAG Coding sequence (CDS) from alignment at sc0000051:51831..52995 >TCONS_00005241 ID=TCONS_00005241|Name=TCONS_00005241|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000051:51831..52995 (Clytia hemisphaerica)
CTACCCCANATCACTGTCTTCGTCCTCGTTGATTGGAGCAAATATTTCGC
AGATCTCCCTCAACTCCTCCCTGGCTATCCCGTACTCTTCAGGCATGTTT
TCCAACGGTACGAACCATCTGCCATCTTTTCTCACTTCACGGTATGCAAA
ATATGAGTCTTTTCTAAACTGTTCTCGCTCTTGATCCTCACAGCTCGGCT
CGAATCTCTCCAACGCTGGTTCAATACGGAGACGTTCTTTCTTTCCACCC
ACAGTTTgttcgaaagtgacgtaatactTTTCTTTGTATTCAACTGAATC
ATCGAGTCGAGTCTTGGATAACACCAAAGTCTCGTTGTCCCAATCATGCC
ACATTGGTAACCAATAATAGCTGACCGCTTCGCTATTAAATTTGCCAAGA
CAGATATCGTTAGTCGGGAACCGTAAAAATTCGACGGAGTTTTCGCTGGC
CACCAACGGTACACCCCAATTGGATTTCAACATCACTTTCTGCGCAGGCG
CTTTAAACCACGTTTCATCTTTCTTCACCTCGTCAACTTCCTTTCGAATA
AAATCTcgcattgttttgtttttcttccaaGCTTTCTTAAGCAGTTTGAG
CAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005241-exon-sc0000051-1491911889:51831..52995 | TCONS_00005241-exon-sc0000051-1491911889:51831..52995 | Clytia hemisphaerica | exon |
| TCONS_00005241-exon-sc0000051-1510915933:51831..52995 | TCONS_00005241-exon-sc0000051-1510915933:51831..52995 | Clytia hemisphaerica | exon |
| TCONS_00005241-exon-sc0000051-1575043694:51831..52995 | TCONS_00005241-exon-sc0000051-1575043694:51831..52995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:51831..52995 . |
Blast
The following BLAST results are available for this feature:
|
