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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005239 ID=TCONS_00005239|Name=TCONS_00005239|organism=Clytia hemisphaerica|type=transcript|length=922bp
GAGAAGATTACACCAAAAGATGTTGCATTCACAACTGACGAAGCCATCAT
CCCCAACTCTGTTCAATGTTGGAAGATTCAAAAAGaaacgaaaatgaaac
aatctgtcaaaaatattacatcAACAAACATAAACCAAAAAGCTTGGATA
CAGTGTGAAGTGGATATCAAAAGTGGATATACATATGAATTCGTTTTCAA
TACTGACAGAGCTGATGACTCCAAAATCACTGTTCAACTTCCGGGCAATC
ATCATCATACAAGTAGGAAAGGAGAAACATTAGTCTACGCTCATAATTGT
GGAAGGCCTTCCAATATACACGCATTCGAAGTTTCGGATGAAAATGGAAT
CACAGATGACGATACATGTATCCCAATCAGCACTGGTCCTTCAATTGCCA
ACACTGTTAAAGAATTCAATCAAAGAGCAATGCAGTATTACAAAGACCAT
ATCGGCGCCAAAACCTTCCCACCCTCGTATTACGTACGAAATGTAAACAT
GAAAGAAGTTATCGCCAGTCTTGAAGAACATTCATCACTTCTTGGAGGGA
AAATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAATACTTGGACTC
AATGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAGTGTCCTGATCA
CTATGACAACACAATCGTTTGTATTTATCCGAATCATAGCTTGATGTTTG
TTTACGTGGTTGGTGAAAACGAAAAACATCTTGACAAGGATTTGGCGAAA
GTCAATGCAGTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTCTCCA
AAATGAACAGTTTACCATTGTTGGAGTTCTCGTCTTACCGGCTTCAagtg
acttgaaaaaaatgaagcagCATCCTTGCTTGAATCTAAACACAAAGAGT
CAAGACTTTGTCAtttcttttg Run BLAST on NCBI protein sequence of TCONS_00005239-protein >TCONS_00005239-protein ID=TCONS_00005239-protein|Name=TCONS_00005239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
EKITPKDVAFTTDEAIIPNSVQCWKIQKETKMKQSVKNITSTNINQKAWI
QCEVDIKSGYTYEFVFNTDRADDSKITVQLPGNHHHTSRKGETLVYAHNC
GRPSNIHAFEVSDENGITDDDTCIPISTGPSIANTVKEFNQRAMQYYKDH
IGAKTFPPSYYVRNVNMKEVIASLEEHSSLLGGKILVGYNPISHLRILGL
NDEKIESVLHFSECPDHYDNTIVCIYPNHSLMFVYVVGENEKHLDKDLAK
VNAVLKTWCYVHRQILQNEQFTIVGVLVLPASSDLKKMKQHPCLNLNTKS
QDFVISF Run BLAST on NCBI transcript from alignment at sc0000051:790882..791993- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005239 ID=TCONS_00005239|Name=TCONS_00005239|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at sc0000051:790882..791993- (Clytia hemisphaerica)
GAGAAGATTACACCAAAAGATGTTGCATTCACAACTGACGAAGCCATCAT
CCCCAACTCTGTTCAATGTTGGAAGATTCAAAAAGAAACGAAAATGAAAC
AATCTGTCAAAAATATTACATCAACAAACATAAACCAAAAAGCTTGGATA
CAGTGTGAAGTGGATATCAAAAGTGGATATACATATGAATTCGTTTTCAA
TACTGACAGAGCTGATGACTCCAAAATCACTGTTCAACTTCCGGGTAAGA
CTTGTCTGGAAAATTTATCTAGGTAAAATCATTTTGAAGATTAGGGGCTA
GATACTTTTTGATATTCTCGTAATACTATCAATTGAAAGAATTTTAAAGG
AAATATTTATGACACTCTCATTTCTTTCCAGGCAATCATCATCATACAAG
TAGGAAAGGAGAAACATTAGTCTACGCTCATAATTGTGGAAGGCCTTCCA
ATATACACGCATTCGAAGTTTCGGATGAAAATGGAATCACAGATGACGAT
ACATGTATCCCAATCAGCACTGGTCCTTCAATTGCCAACACTGTTAAAGA
ATTCAATCAAAGAGCAATGCAGTATTACAAAGACCATATCGGCGCCAAAA
CCTTCCCACCCTCGTATTACGTACGAAATGTAAACATGAAAGAAGTTATC
GCCAGTCTTGAAGAACATTCATCACTTCTTGGAGGGAAAATTCTCGTCGG
ATATAATCCCATAAGCCATCTCAGAATACTTGGACTCAATGATGAAAAGA
TCGAGAGTGTTCTGCATTTTTCTGAGTGTCCTGATCACTATGACAACACA
ATCGTTTGTATTTATCCGAATCATAGCTTGATGTTTGTTTACGTGGTTGG
TGAAAACGAAAAACATCTTGACAAGGATTTGGCGAAAGTCAATGCAGTCT
TGAAAACATGGTGTTATGTTCACAGGCAGATTCTCCAAAATGAACAGTTT
ACCATTGTTGGAGCTCTCGTCTTACCGGCTTCAAGTGACTTNATGAACGG
TTTAACATTGTTGGAGTTCTCGTCTTACCGGCTTCAAGTGACTTGAAAAA
AATGAAGCAGCATCCTTGCTTGAATCTAAACACAAAGAGTCAAGACTTTG
TCATTTCTTTTG Coding sequence (CDS) from alignment at sc0000051:790882..791993- >TCONS_00005239 ID=TCONS_00005239|Name=TCONS_00005239|organism=Clytia hemisphaerica|type=CDS|length=2763bp|location=Sequence derived from alignment at sc0000051:790882..791993- (Clytia hemisphaerica)
ATTGTTGGAGTTCTCGTCTTACCGGCTTCAAGTGACTTGAAAAAAATGAA
GCAGCATCCTTGCTTGAATCTAAACACAAAGAGTCAAGACTTTGTCATTT
CTTTTGCAATCATCATCATACAAGTAGGAAAGGAGAAACATTAGTCTACG
CTCATAATTGTGGAAGGCCTTCCAATATACACGCATTCGAAGTTTCGGAT
GAAAATGGAATCACAGATGACGATACATGTATCCCAATCAGCACTGGTCC
TTCAATTGCCAACACTGTTAAAGAATTCAATCAAAGAGCAATGCAGTATT
ACAAAGACCATATCGGCGCCAAAACCTTCCCACCCTCGTATTACGTACGA
AATGTAAACATGAAAGAAGTTATCGCCAGTCTTGAAGAACATTCATCACT
TCTTGGAGGGAAAATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAA
TACTTGGACTCAATGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAG
TGTCCTGATCACTATGACAACACAATCGTTTGTATTTATCCGAATCATAG
CTTGATGTTTGTTTACGTGGTTGGTGAAAACGAAAAACATCTTGACAAGG
ATTTGGCGAAAGTCAATGCAGTCTTGAAAACATGGTGTTATGTTCACAGG
CAGATTCTCCAAAATGAACAGTTTACCGAGAAGATTACACCAAAAGATGT
TGCATTCACAACTGACGAAGCCATCATCCCCAACTCTGTTCAATGTTGGA
AGATTCAAAAAGAAACGAAAATGAAACAATCTGTCAAAAATATTACATCA
ACAAACATAAACCAAAAAGCTTGGATACAGTGTGAAGTGGATATCAAAAG
TGGATATACATATGAATTCGTTTTCAATACTGACAGAGCTGATGACTCCA
AAATCACTGTTCAACTTCCGGATTGTTGGAGTTCTCGTCTTACCGGCTTC
AAGTGACTTGAAAAAAATGAAGCAGCATCCTTGCTTGAATCTAAACACAA
AGAGTCAAGACTTTGTCATTTCTTTTGCAATCATCATCATACAAGTAGGA
AAGGAGAAACATTAGTCTACGCTCATAATTGTGGAAGGCCTTCCAATATA
CACGCATTCGAAGTTTCGGATGAAAATGGAATCACAGATGACGATACATG
TATCCCAATCAGCACTGGTCCTTCAATTGCCAACACTGTTAAAGAATTCA
ATCAAAGAGCAATGCAGTATTACAAAGACCATATCGGCGCCAAAACCTTC
CCACCCTCGTATTACGTACGAAATGTAAACATGAAAGAAGTTATCGCCAG
TCTTGAAGAACATTCATCACTTCTTGGAGGGAAAATTCTCGTCGGATATA
ATCCCATAAGCCATCTCAGAATACTTGGACTCAATGATGAAAAGATCGAG
AGTGTTCTGCATTTTTCTGAGTGTCCTGATCACTATGACAACACAATCGT
TTGTATTTATCCGAATCATAGCTTGATGTTTGTTTACGTGGTTGGTGAAA
ACGAAAAACATCTTGACAAGGATTTGGCGAAAGTCAATGCAGTCTTGAAA
ACATGGTGTTATGTTCACAGGCAGATTCTCCAAAATGAACAGTTTACCGA
GAAGATTACACCAAAAGATGTTGCATTCACAACTGACGAAGCCATCATCC
CCAACTCTGTTCAATGTTGGAAGATTCAAAAAGAAACGAAAATGAAACAA
TCTGTCAAAAATATTACATCAACAAACATAAACCAAAAAGCTTGGATACA
GTGTGAAGTGGATATCAAAAGTGGATATACATATGAATTCGTTTTCAATA
CTGACAGAGCTGATGACTCCAAAATCACTGTTCAACTTCCGGATTGTTGG
AGTTCTCGTCTTACCGGCTTCAAGTGACTTGAAAAAAATGAAGCAGCATC
CTTGCTTGAATCTAAACACAAAGAGTCAAGACTTTGTCATTTCTTTTGCA
ATCATCATCATACAAGTAGGAAAGGAGAAACATTAGTCTACGCTCATAAT
TGTGGAAGGCCTTCCAATATACACGCATTCGAAGTTTCGGATGAAAATGG
AATCACAGATGACGATACATGTATCCCAATCAGCACTGGTCCTTCAATTG
CCAACACTGTTAAAGAATTCAATCAAAGAGCAATGCAGTATTACAAAGAC
CATATCGGCGCCAAAACCTTCCCACCCTCGTATTACGTACGAAATGTAAA
CATGAAAGAAGTTATCGCCAGTCTTGAAGAACATTCATCACTTCTTGGAG
GGAAAATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAATACTTGGA
CTCAATGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAGTGTCCTGA
TCACTATGACAACACAATCGTTTGTATTTATCCGAATCATAGCTTGATGT
TTGTTTACGTGGTTGGTGAAAACGAAAAACATCTTGACAAGGATTTGGCG
AAAGTCAATGCAGTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTCT
CCAAAATGAACAGTTTACCGAGAAGATTACACCAAAAGATGTTGCATTCA
CAACTGACGAAGCCATCATCCCCAACTCTGTTCAATGTTGGAAGATTCAA
AAAGAAACGAAAATGAAACAATCTGTCAAAAATATTACATCAACAAACAT
AAACCAAAAAGCTTGGATACAGTGTGAAGTGGATATCAAAAGTGGATATA
CATATGAATTCGTTTTCAATACTGACAGAGCTGATGACTCCAAAATCACT
GTTCAACTTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005239-exon-sc0000051-1575043694:791750..791993 | TCONS_00005239-exon-sc0000051-1575043694:791750..791993 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1575043694:791041..791612 | TCONS_00005239-exon-sc0000051-1575043694:791041..791612 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1575043694:790882..790987 | TCONS_00005239-exon-sc0000051-1575043694:790882..790987 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1510915933:791750..791993 | TCONS_00005239-exon-sc0000051-1510915933:791750..791993 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1510915933:791041..791612 | TCONS_00005239-exon-sc0000051-1510915933:791041..791612 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1510915933:790882..790987 | TCONS_00005239-exon-sc0000051-1510915933:790882..790987 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1491911889:791750..791993 | TCONS_00005239-exon-sc0000051-1491911889:791750..791993 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1491911889:791041..791612 | TCONS_00005239-exon-sc0000051-1491911889:791041..791612 | Clytia hemisphaerica | exon |
| TCONS_00005239-exon-sc0000051-1491911889:790882..790987 | TCONS_00005239-exon-sc0000051-1491911889:790882..790987 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:790882..791993 - |
Blast
The following BLAST results are available for this feature:
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