TCONS_00005237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005237
Unique NameTCONS_00005237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005237 ID=TCONS_00005237|Name=TCONS_00005237|organism=Clytia hemisphaerica|type=transcript|length=1198bp
TAAACTACCAACCACAATGAGGATGAGCAGTTGCTTACataaattgaaag
aagtttTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGAA
ATTCGATCGAAAGgaaaCGTTTTGCTAACAAAAGACGAATCTAACAATGC
CATAATCCAGGAAACTCAATCAAATGGAGATGACGAAAATAGGCCAGGTG
GCTCTCAATCAACAACAAAAGATGAATTTCAGGTTAATGAGCGAAAAGAA
GATCGAGAAGCAAGCGAATCATTTGACACAACGAAGCTACGCGACCCCGA
AAACGTTTTTAAGTCGCAGTTACAGACGAATGAAAACGAAGAAGTCGTGA
AAGAACTGTCCACTACATATACCTATATGAAAGGGAAATGTGGACATTCT
TTCGAGAGCTTCTTAAAACCACGAATCTTTTATTTCACCAAAGCTTCCAC
ACCTTTATTTGCTTGGTTCCTTCCGATACTAGCTGCAACCCTCCAGTTCT
GTTTGAATGAGAGAAAGGAGGACGAAGTTGTGGTATTGTGCGAAGATATC
TGTCAAGTAAAAATGGTTCAGTATGCCCTGGAAAGGATACACAAGCGTCC
AATTGCATACGCACCTTACCTTACCGGAGAATATCCTCACGACATCCACA
AGATGAaggaaaaattcgtcaaaagTTTGGACGAGATGGAGACAGTTCTG
ATATCCGATTATCGGTCTGTTCGTGGATTGGAAATGGCTCATACAATCAT
CTTTGTGGATCCAGAAAACGAGGCCAACGCACATTTTCTCATCGAAGCAA
TCACACGAACCATAACAAATCTTGATGTCATTTCAACAAAACCTTTTACA
CAAAGTCCTTCCACAAGTATCgaaagagcttttcaaaaatatgtcgACGG
GACTTTAGCAATCAAGACACACGTTGAATCAAGCAAAGACGCTGAAGATC
TTCTGAAAGTACGATTTCAATACAACGAAAAGGACGGCtcaaaacaaaca
gaaattATTTCACAGAAATTGACCGATTTCAGTTTCGACGTTTCACAATC
TCTAGATGATTTTAACCAAAATGAAGAGCTATGGCAAAACTATTTCAGga
TGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACCAACAAATGG
GACGGCAAACGTATGGAAAGTGTGAGCTTGAATGATGGAACTATGCTC
Run BLAST on NCBI

transcript from alignment at sc0000051:785954..790212-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005237 ID=TCONS_00005237|Name=TCONS_00005237|organism=Clytia hemisphaerica|type=transcript|length=4259bp|location=Sequence derived from alignment at sc0000051:785954..790212- (Clytia hemisphaerica)
TAAACTACCAACCACAATGAGGATGAGCAGTTGCTTACATAAATTGAAAG
AAGTTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGAA
ATTCGATCGAAAGGTATTACATACTATTTATGTAACATTCTTTTATAATC
GTGTTCAATTGCAACAGTGTTCAAGTAGAATATACTCATTTCCATTTATG
ACCGAAATATTTTCTTACATTTTAATTTTTATTTTTCAGGAAACGTTTTG
CTAACAAAAGACGAATCTAACAATGCCATAATCCAGGAAACTCAATCAAA
TGGAGATGACGAAAATAGGCCAGGTGGCTCTCAATCAACAACAAAAGATG
AATTTCAGGTTAATGAGGTAATTTTGTTAATGAGTGTACTGTTTATAATT
AGCTTACCATTCAAATTGAATAATGAAGCTATTTTCTCTTTGTCAGAACC
GATAATCTTTTTAGAAATTATTTTAACAGATTTTTTGTTAAAGGTTTTAT
TTTTACATAAGTGTTCCCGTTTCATATCAGACACATATTTTATATCCGGA
CAGTTTCTACCTATTGTTATATCATGCTGATATAAGCAAAAAGATGTTCT
TATTTTCCTCTTTCTTTGCTCGACATCCGTGTCAATCCAATGTGAAAAAG
CTTGTGAATTAAAATTGACGAGTAAGCAAAGGATATCACTCTTTATTTAA
AAACAAAACCTTTAATTCTGTTTTTCCAGACTAGAACAGATTAACTTTTT
GTGTTGGATATAACAACTTATTTTTGAAATTCCGTTCAAATGATCTGATT
CAGATGTAATTTGCTTCTCTATAACTTGTGAAAAAAACGTGCTCTCCTTG
GCAACACACCCTGCTCATAGACCCGCTAGCAGGATCTTTCAGGCAGTTGG
GCTTAAATAAAGGACCAAAATTTAATTGGGAAGATTAATATATTCCATTT
TTTTGAGCCAGAAAACTCAGTAAGGATGGAAAAAGTAGCATAATTCTTTT
TGGAGTATAATTTTCCACTGGGGACTATATTTTCATCAGTTCTCTTTCAA
TATGAATGGGTTCTACTTGATCTGTGAGAAGTGGCTGATTGCCATCGATT
TTAAAGCCCCAAAGAGGCTAGTTCTAAAATTCCTGGATGGGAAATGAAGC
CACTATTTCCCAACCAAAACACGTAACCTGTGTGTTTTTCAAATAAAATT
TAAAAGTGCACGGCAAACTTAAGGCTTCACTTTTTCTTGTTTTAAAAGGT
AGAAGATTCTTCTCTAGCACCTTCGTACGATGACCCAGGAAGGCTCAAAA
CACGCACTTCTAGTTTTCACACACTTCCAGTTCTTATAAAATTTGTGTAC
TAGAACTTTCTTAGGTAAATGGCCCAGAAGGCTCAAGTGACACTGCGCAC
TTCTGACTTGTTATCACAGCGGGAAATTTCCAAGCGAGCGGCCCGCGCAA
TGAAATTTTTTTTTGTCGTTAAAATGAATGTCGAGTTACGCAAAGTGAAT
CAAAATTTTCGAGTTGTTCATATCAAGAGTTACAGGTTAAAATTTCCGAT
TTAAGTCCTGGTCAGCAAAATGTTCCCCTAGTGGCAAAAATCTTGAAATT
TTCGGGCTTAAATCGGGGAAGCAAAACGTGATAGAATATCAACTTTGTTT
TTTGCATCAACCTTTTCCACCCCTTACCTCAAAGTAGAACAAATAGAAAC
GAAACCAATAGTTAGGCAAAGAAAAATAAAGCACCAAAATCTAAGAGGTT
CCGTACCATTTACTTCCTGGTATTTCTTCAGATTTGTTTGCTACAACACC
AAAAATTCCATAGATTTTTTATTCTTTCTAAGTGCTTCTGGTGAGCATTT
ACGCGTCAAAATAATGTTGTTATATGTAAATCACAGACCAGATTTACAAC
TCGTCAAACCACAAATGATTTCGTTATTATCATCAGCTCATTTATTACAA
CTTGGTATCTATTTTGCTTACCAGAACGGCTCTCTTTCGAGGGGGGAATT
TGCGTATCTAAATTATTTTTAAAAGTGTGCAGTGTCGTCACAAAAAAACT
CGGAAGTGCGCAGTGTCTCGTGAGCCTCCTGGGCCATGACCCTAGACAGT
TCTAGCTCACAAATTTTATAAGAACTGGAAGTGCGTGGTGAGCCTTAGGG
GCCATCGAGGCTTCAAACTGAGTTCCACCACTTAAATTACCAGCTACAGA
AGAAAAACAAGCCGTGGATTTTCTTAATTAAATTTTTACAATTAAACCTT
ACTTTTATGTTTTAACGAAAAATTTCAAATTACTTCCTATTTATTAGCGA
AAAGAAGATCGAGAAGCAAGCGAATCATTTGACACAACGAAGCTACGCGA
CCCCGAAAACGTTTTTAAGTCGCAGTTACAGACGAATGAAAACGAAGAAG
TCGTGAAAGAACTGTCCACTACATATACCTATATGAAAGGGAAATGTGGA
CATTCTTTCGAGAGCTTCTTAAAACCACGAATCTTTTATTTCACCAAAGC
TTCCACACCTTTATTTGCTTGGTTCCTTCCGATACTAGCTGCAACCCTCC
AGTTCTGTTTGAATGAGAGAAAGGAGGACGAAGTTGTGGTATTGTGCGAA
GATATCTGTCAAGTAAAAATGGTTCAGTATGCCCTGGAAAGGATACACAA
GCGTCCAATTGCATACGCACCTTACCTTACCGGAGAATATCCTCACGACA
TCCACAAGATGAAGGAAAAATTCGTCAAAAGTTTGGACGAGATGGAGACA
GTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGGAAATGGCTCATAC
AATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCACATTTTCTCATCG
AAGCAATCACACGAACCATAACAAATCTTGATGTCATTTCAACAAAACCT
TTTACACAAAGTCCTTCCACAAGTATCGAAAGAGCTTTTCAAAAATATGT
CGACGGGACTTTAGCAATCAAGACACACGTTGAATCAAGCAAAGACGCTG
AAGATCTTCTGAAAGTACGATTTCAATACAACGAAAAGGACGGCTCAAAA
CAAACAGAAATTATTTCACAGAAATTGACCGATTTCAGTTTCGACGTTTC
ACAATCTCTAGATGATTTTAACCAAAATGAAGAGCTATGGCAAAACTATT
TCAGGTATAATCTTTCTGTTGAAATTTTCAAGTATTAATGATCTTTATTA
TTGCAAAAAGCTCAATGAGAGGATATAAGTCATATTTTCCAAAATTAGGT
GCCCGCTAATCCTTAAACCAAATAAATTCCAGACAAAAAAGAAATACATA
TTTTTTTTCCTTCAGGATGGCGTTTACTCTTTCAACTTCCATTTCATCTT
TGGGAACGTAAGTCAATACAGTTGATGTCCCCTGATTCAGCATTGTCAAT
CAACTAACAGTCACTTGACAAATTCCCTTTAAATTTATCATAAAAGATAC
TTTTTTATCGGACATTCTATCGCTATCATCTCCCTGGGGTTGGGGTAATT
AAAATTCACGATTAAACGATTTGCGGTGCACGATTTCCGATCCATAAATC
ATGCTGATTTATGCCTAATCATGCTAATCATGACAAAATGATTTGAAAAC
GGAGTTTAGTTCGGGGGGGGGTCGACATTCTTGAAAGATTCCCTATAAAG
ATAGACTGGGAATCCAGTCGTTTATAACGTTTTTGTGGAAAGCGAGAAAT
TTTTATGTCGGGATATGGTTAAAATAAACGACTGGGCTAAGGGGGTTTCC
GTAGCTTACGGGAGTTCCAGCAGGGCCCGCAGATTTCTGCGGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTATAAAGACGGAATGTTCTATTTCCTTGATTT
TGCAATACTATATAAACTTCAAGTGAAGAAAAAAAATTACCCTCGTTCGC
AATGGAATGTAATATTCCAATCTTCATAATTTTTGTTTTTGCTGTTCTGA
AAGGTAAAGCTTCTATGGATGATATATATTAATAATTACTCCTGCATATA
GCAACAAATGGGACGGCAAACGTATGGAAAGTGTGAGCTTGAATGATGGA
ACTATGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002979XLOC_002979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005237-exon-sc0000051-1575043694:790100..790212TCONS_00005237-exon-sc0000051-1575043694:790100..790212Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1575043694:789846..789973TCONS_00005237-exon-sc0000051-1575043694:789846..789973Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1575043694:787059..787915TCONS_00005237-exon-sc0000051-1575043694:787059..787915Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1575043694:786856..786897TCONS_00005237-exon-sc0000051-1575043694:786856..786897Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1575043694:785954..786011TCONS_00005237-exon-sc0000051-1575043694:785954..786011Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1510915933:790100..790212TCONS_00005237-exon-sc0000051-1510915933:790100..790212Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1510915933:789846..789973TCONS_00005237-exon-sc0000051-1510915933:789846..789973Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1510915933:787059..787915TCONS_00005237-exon-sc0000051-1510915933:787059..787915Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1510915933:786856..786897TCONS_00005237-exon-sc0000051-1510915933:786856..786897Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1510915933:785954..786011TCONS_00005237-exon-sc0000051-1510915933:785954..786011Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1491911889:790100..790212TCONS_00005237-exon-sc0000051-1491911889:790100..790212Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1491911889:789846..789973TCONS_00005237-exon-sc0000051-1491911889:789846..789973Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1491911889:787059..787915TCONS_00005237-exon-sc0000051-1491911889:787059..787915Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1491911889:786856..786897TCONS_00005237-exon-sc0000051-1491911889:786856..786897Clytia hemisphaericaexon
TCONS_00005237-exon-sc0000051-1491911889:785954..786011TCONS_00005237-exon-sc0000051-1491911889:785954..786011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:785954..790212 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.114609	0.0901608	0.0176173	0	0	0.214258	0	1.15592	2.93165	1.78464	0.949863	6.64675	6.11059	2.7028	3.96304	2.02903	4.65188	6.86321	10.9658	4.20185	2.72992	3.47054	3.88119	6.66509	5.33715	24.29	15.4538	11.8777	8.58281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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