TCONS_00005236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005236
Unique NameTCONS_00005236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1126

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005236 ID=TCONS_00005236|Name=TCONS_00005236|organism=Clytia hemisphaerica|type=transcript|length=1126bp
aTTGTAGAGTCAGTATTCAATCAAACTTGACTGCTTGATACAAATTTTCC
AGTAAGATTTTGATATAGACTTCTGCTGTTTAGGCTCAATCTCtttccaa
gtgaaccgctgtgaGTGGGAATCCCAAACTTTGATTTGACGCCTGCGTAG
CAACCAAGGTCCAAAAACCACTATCCCACGAAGCGCCAATCCAACATGCC
AGACTCTCAATAAATACAATCGATAATTTTTTCCAATCGATGACTAATCA
ATAAATAATCAATGGATTGGATATCGTTTGATTTCGATAATTGATAGACA
ATCGATAATCAAGATTTTACGGGAAGCTCGACTGGCTATCAATTGTAATT
GTGATCGATTTTCCATCGATTTATTATAAAGATGTTCGATTGATTACAAT
TGACAGCCAATCGAGTCCAATCGATTAAAAAAATCTATTATCAGTTAGAA
TAGTCTCGGTTATCGAAATCGATCGACATCCAATCAATCAGTTGGTTAAA
ATGAGTCTGGAAAATGACGATTAACACATCGCACCTACCTAGTTAAGAAA
AGTTAACTTCTATCACTTATAGATTGACACCCCCTGCTATGAATTCTTCT
GTGAAATACTAAGTAAACGATAATCTTTCTTACAACACAACCtaatcaaa
tatcaacaaataattctACCTGTAAAATTGAAGATCATACCTGTCAGGTC
TTGTCTGTTGTTGTGTTTGTCTGTATTTGTTGTTGTGTGTAGTGATGTTC
AAGAGCAACTCTTTAATTGTAAGATTCATATCACTTTATTGGTGCATgtt
tactaactacacaaacataaaatactatgctaaaagaaatataaatctct
ttaagtactctaaaaacaccaaaaacatgataaaaatacaaatatcCAGA
GCAAGTCTGACAGCATGATCAAATccaccatttaaaaaaaaacgagAATG
TTTACGAACGCTTGGTTCCACCTACCTAGCACTTGCGGACTGGAATCATT
AAATTTTATCTTAGCGAGTGAGTCCATATTTTAGAATCttcgagaatgtt
ctagaagtttcaactactttcgttttctaaatttttcattacaccgccgc
cgcgaaagacgatcgtaatactttcg
Run BLAST on NCBI

transcript from alignment at sc0000051:778729..780295-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005236 ID=TCONS_00005236|Name=TCONS_00005236|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at sc0000051:778729..780295- (Clytia hemisphaerica)
ATTGTAGAGTCAGTATTCAATCAAACTTGACTGCTTGATACAAATTTTCC
AGTAAGATTTTGATATAGACTTCTGCTGTTTAGGCTCAATCTCTTTCCAA
GTGAACCGCTGTGAGTGGGAATCCCAAACTTTGATTTGACGCCTGCGTAG
CAACCAAGGTCCAAAAACCACTATCCCACGAAGCGCCAATCCAACATGCC
AGACTCTCAATAAATACAATCGATAATTTTTTCCAATCGATGACTAATCA
ATAAATAATCAATGGATTGGATATCGTTTGATTTCGATAATTGATAGACA
ATCGATAATCAAGATTTTACGGGAAGCTCGACTGGCTATCAATTGTAATT
GTGATCGATTTTCCATCGATTTATTATAAAGATGTTCGATTGATTACAAT
TGACAGCCAATCGAGTCCAATCGATTAAAAAAATCTATTATCAGTTAGAA
TAGTCTCGGTTATCGAAATCGATCGACATCCAATCAATCAGTTGGTTAAA
ATGAGTCTGGAAAATGACGATTAACACATCGCACCTACCTAGTTAAGAAA
AGTTAACTTCTATCACTTATAGATTGACACCCCCTGCTATGAATTCTTCT
GTGAAATACTAAGTAAACGATAATCTTTCTTACAACANCGACCCTGCCTA
TGCCCCGGACAGTCCGGGGCAAATGTCCGGGGCTCCAATTTTTGCGCCAT
AAATTTACCCCGGACGTATTTCAATGAATTAGAAAAAAGCCCGCGCGGTC
AGCGATTCTATAAAAAGNACAGGCCTCACACACGAAACGCCAAAATCAAT
ACATTACAAGATCTTTTGGAAGACGGCGTTTGTCCACGGAAGAATATTTC
AATGAATTAGAAAAAAGCCCGCGCGGTCAGCGATTCTATAAAAAGCGACC
GTGCGGGCTGTCTGGGGCGTCCGGGGTAGTCTCTCAAAAACAAATAATAC
GGACCCCGGGCACGCATCAAAAAAACCCCGGACTGTCGGGGCATAGGAGG
CAGGGTCGTATAGATTGACACCCCCTGCTATGAATTCTTCTGTGAAATAA
TAAGTAAACGATAATCTTTCTTACAACACAACCTAATCAAATATCAACAA
ATAATTCTACCTGTAAAATTGAAGATCATACCTGTCAGGTCTTGTCTGTT
GTTGTGTTTGTCTGTATTTGTTGTTGTGTGTAGTGATGTTCAAGAGCAAC
TCTTTAATTGTAAGATTCATATCACTTTATTGGTGCATGTTTACTAACTA
CACAAACATAAAATACTATGCTAAAAGAAATATAAATCTCTTTAAGTACT
CTAAAAACACCAAAAACATGATAAAAATACAAATATCCAGAGCAAGTCTG
ACAGCATGATCAAATCCACCATTTAAAAAAAAACGAGAATGTTTACGAAC
GCTTGGTTCCACCTACCTAGCACTTGCGGACTGGAATCATTAAATTTTAT
CTTAGCGAGTGAGTCCATATTTTAGAATCTTCGAGAATGTTCTAGAAGTT
TCAACTACTTTCGTTTTCTAAATTTTTCATTACACCGCCGCCGCGAAAGA
CGATCGTAATACTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002978XLOC_002978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005236-exon-sc0000051-1575043694:779660..780295TCONS_00005236-exon-sc0000051-1575043694:779660..780295Clytia hemisphaericaexon
TCONS_00005236-exon-sc0000051-1575043694:778729..779218TCONS_00005236-exon-sc0000051-1575043694:778729..779218Clytia hemisphaericaexon
TCONS_00005236-exon-sc0000051-1510915933:779660..780295TCONS_00005236-exon-sc0000051-1510915933:779660..780295Clytia hemisphaericaexon
TCONS_00005236-exon-sc0000051-1510915933:778729..779218TCONS_00005236-exon-sc0000051-1510915933:778729..779218Clytia hemisphaericaexon
TCONS_00005236-exon-sc0000051-1491911889:779660..780295TCONS_00005236-exon-sc0000051-1491911889:779660..780295Clytia hemisphaericaexon
TCONS_00005236-exon-sc0000051-1491911889:778729..779218TCONS_00005236-exon-sc0000051-1491911889:778729..779218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:778729..780295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43465	1.01095	1.8752	1.53569	1.75667	1.11646	1.29326	2.03012	0.911045	0.823736	1.8054	0.801194	0.980848	1.08679	0.623892	0.285756	0.241666	0.752378	1.81729	1.46157	1.78994	2.40076	0.665399	1.30004	2.04678	1.35441	2.11308	2.12787	1.49067	1.15475
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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