TCONS_00005235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005235
Unique NameTCONS_00005235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005235 ID=TCONS_00005235|Name=TCONS_00005235|organism=Clytia hemisphaerica|type=transcript|length=1488bp
TGAAGAACGGAAGGCGCaatgaaaaaggaagaaaaagtaatttgtttatc
tttgctTTTGATTAGTGGCTCACTCTCTTCCAACATCATACGATTGACAA
AATGGAATCAAGCAAATTTTCGAATGGAagggaaaaacaaaaaacacccT
TCATCGCCATACAAAAACATCAACGTGGAGAGCGTTGAACGTTGTTTGGA
TCAATGTACATATGAAGGGTCCTGCAAAGCTGCCAATGTGGACACCAACA
AGACTCCTTTAGAATGCCAACTCTTATCACACGACCAAAACGATAACAAC
CAATATATTGACGCTTCGGGATTTTATTACTACGACACAGGAATAACACA
GCTTTCCACCTTGAGAGCAGTTCAGTATTCAAGCTCATGTTTCGTACCAA
ACACTTTTTCTTGCGATGTGGTGGACGGTAGCAAACTAGTGCAATCATCC
ACCAATTGTGGAGAGTTGTTCGCTTACTTCAGTTTTGACGCAGAACAAGG
AACCATCTTTCATCATTGTTCCGCACTTCCTGTTTGTTTTGCCAGCACAA
GCGCCGGTTCCGAAATGATACTCAGTACAACAAATTGTTTGCTAAGATCG
AAGGATGGGACGGGTGCTAGCTACAAGCGAACTTTCCGCCGTGATTTCAG
ACAATATCTCATGTATAACGCCGGATGTATCCAACTTTCGTCGAATTCAG
GCAGCGATGGCAACACTTTGATTATTAGCGATAATTGTATGAGTGGACCG
GATGCTGACAAACAAATCTATTTCCCAGAACTCGAGAGTAAAAAGAAGAT
ATGGACGACGTATTGCAGCGGAGTTCCAGCAAACTTTGATGACTTTCTTA
CCCATAATTTCGGCGGCTGTTACACGTCGTCAGGGTACGCTGATGACTTC
TTAATGATGAGCAGCTATGAAGTACCGAGTACCCACTTCTCCATCCGAAT
GCAGTCCTGGTTCATTCCCGAACACACCGGTTATTACCGATTCGGTGCGG
CGTGTAAATTGAGATGTGTTGTGTATTGTGGAACGAGTGAATCGACAAAG
CAGATGGTTTTGAGAGATGACGACACATCGTGGCCAGGTGGTGCACTGAT
GGTCACGTGAGTAGTTCTTTTACCACACTAGTACTGATGTAACAAAACCT
ATCTTTATGTCGGACGGATATTTCGATACTTTGAGCCCCTGTAAAAAACG
GTATGAGCATATTTGGCAGTGAAGTCTTAATTTGTTATGTTTGGTGCTat
tttcaaatacaaaaacatatTCGAGTAAAACTACACCAactttttggtat
caatacttacatgtttttttatgagcAAGTATCTACCCCtgtatcaggct
cgcattatgcttaccAAACAATagagaaaaaacatgtaatgtTTACGTAT
TCGAAACAGCTAAAAATCTTCCTCTGCTAATGCACATAATATATGATTAG
CCTAAATATGCTTTGTGATTTATCCACATTTATCTGAG
Run BLAST on NCBI

protein sequence of TCONS_00005235-protein

>TCONS_00005235-protein ID=TCONS_00005235-protein|Name=TCONS_00005235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MKKEEKVICLSLLLISGSLSSNIIRLTKWNQANFRMEGKNKKHPSSPYKN
INVESVERCLDQCTYEGSCKAANVDTNKTPLECQLLSHDQNDNNQYIDAS
GFYYYDTGITQLSTLRAVQYSSSCFVPNTFSCDVVDGSKLVQSSTNCGEL
FAYFSFDAEQGTIFHHCSALPVCFASTSAGSEMILSTTNCLLRSKDGTGA
SYKRTFRRDFRQYLMYNAGCIQLSSNSGSDGNTLIISDNCMSGPDADKQI
YFPELESKKKIWTTYCSGVPANFDDFLTHNFGGCYTSSGYADDFLMMSSY
EVPSTHFSIRMQSWFIPEHTGYYRFGAACKLRCVVYCGTSESTKQMVLRD
DDTSWPGGALMVT
Run BLAST on NCBI

transcript from alignment at sc0000051:750421..752853-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005235 ID=TCONS_00005235|Name=TCONS_00005235|organism=Clytia hemisphaerica|type=transcript|length=2433bp|location=Sequence derived from alignment at sc0000051:750421..752853- (Clytia hemisphaerica)
TGAAGAACGGAAGGCGCAATGAAAAAGGAAGAAAAAGTAATTTGTTTATC
TTTGCTTTTGATTAGTGGCTCACTCTCTTCCAACATCATACGATTGACAA
AATGGAATCAAGCAAATTTTCGAATGGAAGGGAAAAACAAAAAACACCCT
TCATCGCCATACAAAAACATCAACGTGGAGAGCGTTGAACGTTGTTTGGA
TCAATGTACATATGAAGGGTCCTGCAAAGCTGCCAATGTGGACACCAACA
AGACTCCTTTAGAATGCCAACTCTTATCACACGACCAAAACGATAACAAC
CAATATATTGACGCTTCGGGATTTTATTACTACGACACAGGAATAACACA
GCTTTCCACCTTGAGAGCAGTTCAGTATTCAAGCTCATGTTTCGTACCAA
ACACTTTTTCTTGCGATGTGGTGGACGGTAGCAAACTAGTGCAATCATCC
ACCAATTGTGGAGAGTTGTTCGCTTACTTCAGTTTTGACGCAGAACAAGG
AACCATCTTTCATCATTGTTCCGCACTTCCTGTTTGTTTTGCCAGCACAA
GCGCCGGTTCCGAAATGATACTCAGTACAACAAATTGTTTGCTAAGATCG
AAGGATGGGACGGGTGCTAGCTACAAGCGAACTTTCCGCCGTGATTTCAG
TAAGTTTTTTATTCTCTCTTCGTGAACAATGAACTAGTCTAGTTTTGGTG
TATGGACACTGATCCAGGATAAAATGTCAATAAGGTTCCTTTAAAGAAAT
TTAAATACCTTATCGGCCCTTTTTACGCCGGCCCTGATTTAACGCCGGCC
CCTATTTAACGCCGGCCCCTTTTATACCAGCCCTTATTACGCCACAGCCT
AATTTTGGGCTTACGCCAATTAGGGCCGTTAATAACGCCAAAATTTGTAA
AAATGGCTACATATGCTTCAAATTAGTAAATAATGACTAAAATTTACAAT
GAAATGTCATTTTTCAGTAGCAAACTGTTGAAAATTCCATCGAAAATCAC
TGATTTTTTAATATATTAAATATTTCACAGAAGTTTTCAATATGGGGTAA
AACAGTGGAAAATTTTCCTCTTCGAATCATACCTAAAGTCCTTTAAATTG
AGAAATAATGATAAAAAATTAACACCGCTTTTAGGTTAAAATTGCCATAC
CTAAAGTCCTTTAAATTGAGAAATAATGATAAAAAATTAACACCGCTTTT
AGGTTAAAATTGCAAAATCTTGGCCCTTTTTACGCCGGCCCTTATTACGC
CAAGAGCCCAAAAATAACGCCAATAAGGGCCGGTGTTAAAAGGGCCGATA
AGGTAATGATTGAACGTCATATACGCAATTTGTGAATCTAAAACCAAACA
AACAGTTGTTGTATTATTTTGACCTCTATTTTCTAAGGACAATATCTCAT
GTATAACGCCGGATGTATCCAACTTTCGTCGAATTCAGGCAGCGATGGCA
ACACTTTGATTATTAGCGATAATTGTATGAGTGGACCGGATGCTGACAAA
CAAATCTATTTCCCAGAACTCGAGAGTAAGACATATCTTTCACCGCACGC
TCTTCTAGTTGCGTTGTTTCAATGCACCCTCTTTCAGTCGTGTTGTTTCA
ATGCACCCTCTTTCAGTCGTGTTGTTTCAATGCACCCTCTTTCAATCGTG
TTGTTTATCGTTCACTTTGAAAAATAATGTGTGTACGTGTACTGCAAAAC
AACCGGATGAAATTACTTTTTTTTTCCGGCAGGTAAAAAGAAGATATGGA
CGACGTATTGCAGCGGAGTTCCAGCAAACTTTGATGACTTTCTTACCCAT
AATTTCGGCGGCTGTTACACGTCGTCAGGGTACGCTGATGACTTCTTAAT
GATGAGCAGCTATGAAGTACCGAGTACCCACTTCTCCATCCGAATGCAGT
CCTGGTTCATTCCCGAACACACCGGTTATTACCGATTCGGTGCGGCGTGT
AAATTGAGATGTGTTGTGTATTGTGGAACGAGTGAATCGACAAAGCAGAT
GGTTTTGAGAGATGACGACACATCGTGGCCAGGTGGTGCACTGATGGTCA
CGTGAGTAGTTCTTTTACCACACTAGTACTGATGTAACAAAACCTATCTT
TATGTCGGACGGATATTTCGATACTTTGAGCCCCTGTAAAAAACGGTATG
AGCATATTTGGCAGTGAAGTCTTAATTTGTTATGTTTGGTGCTATTTTCA
AATACAAAAACATATTCGAGTAAAACTACACCAACTTTTTGGTATCAATA
CTTACATGTTTTTTTATGAGCAAGTATCTACCCCTGTATCAGGCTCGCAT
TATGCTTACCAAACAATAGAGAAAAAACATGTAATGTTTACGTATTCGAA
ACAGCTAAAAATCTTCCTCTGCTAATGCACATAATATATGATTAGCCTAA
ATATGCTTTGTGATTTATCCACATTTATCTGAG

Coding sequence (CDS) from alignment at sc0000051:750421..752853-

>TCONS_00005235 ID=TCONS_00005235|Name=TCONS_00005235|organism=Clytia hemisphaerica|type=CDS|length=3276bp|location=Sequence derived from alignment at sc0000051:750421..752853- (Clytia hemisphaerica)
GTAAAAAGAAGATATGGACGACGTATTGCAGCGGAGTTCCAGCAAACTTT
GATGACTTTCTTACCCATAATTTCGGCGGCTGTTACACGTCGTCAGGGTA
CGCTGATGACTTCTTAATGATGAGCAGCTATGAAGTACCGAGTACCCACT
TCTCCATCCGAATGCAGTCCTGGTTCATTCCCGAACACACCGGTTATTAC
CGATTCGGTGCGGCGTGTAAATTGAGATGTGTTGTGTATTGTGGAACGAG
TGAATCGACAAAGCAGATGGTTTTGAGAGATGACGACACATCGTGGCCAG
GTGGTGCACTGATGGTCACGTGAGACAATATCTCATGTATAACGCCGGAT
GTATCCAACTTTCGTCGAATTCAGGCAGCGATGGCAACACTTTGATTATT
AGCGATAATTGTATGAGTGGACCGGATGCTGACAAACAAATCTATTTCCC
AGAACTCGAGAATGAAAAAGGAAGAAAAAGTAATTTGTTTATCTTTGCTT
TTGATTAGTGGCTCACTCTCTTCCAACATCATACGATTGACAAAATGGAA
TCAAGCAAATTTTCGAATGGAAGGGAAAAACAAAAAACACCCTTCATCGC
CATACAAAAACATCAACGTGGAGAGCGTTGAACGTTGTTTGGATCAATGT
ACATATGAAGGGTCCTGCAAAGCTGCCAATGTGGACACCAACAAGACTCC
TTTAGAATGCCAACTCTTATCACACGACCAAAACGATAACAACCAATATA
TTGACGCTTCGGGATTTTATTACTACGACACAGGAATAACACAGCTTTCC
ACCTTGAGAGCAGTTCAGTATTCAAGCTCATGTTTCGTACCAAACACTTT
TTCTTGCGATGTGGTGGACGGTAGCAAACTAGTGCAATCATCCACCAATT
GTGGAGAGTTGTTCGCTTACTTCAGTTTTGACGCAGAACAAGGAACCATC
TTTCATCATTGTTCCGCACTTCCTGTTTGTTTTGCCAGCACAAGCGCCGG
TTCCGAAATGATACTCAGTACAACAAATTGTTTGCTAAGATCGAAGGATG
GGACGGGTGCTAGCTACAAGCGAACTTTCCGCCGTGATTTCAGTAAAAAG
AAGATATGGACGACGTATTGCAGCGGAGTTCCAGCAAACTTTGATGACTT
TCTTACCCATAATTTCGGCGGCTGTTACACGTCGTCAGGGTACGCTGATG
ACTTCTTAATGATGAGCAGCTATGAAGTACCGAGTACCCACTTCTCCATC
CGAATGCAGTCCTGGTTCATTCCCGAACACACCGGTTATTACCGATTCGG
TGCGGCGTGTAAATTGAGATGTGTTGTGTATTGTGGAACGAGTGAATCGA
CAAAGCAGATGGTTTTGAGAGATGACGACACATCGTGGCCAGGTGGTGCA
CTGATGGTCACGTGAGACAATATCTCATGTATAACGCCGGATGTATCCAA
CTTTCGTCGAATTCAGGCAGCGATGGCAACACTTTGATTATTAGCGATAA
TTGTATGAGTGGACCGGATGCTGACAAACAAATCTATTTCCCAGAACTCG
AGAATGAAAAAGGAAGAAAAAGTAATTTGTTTATCTTTGCTTTTGATTAG
TGGCTCACTCTCTTCCAACATCATACGATTGACAAAATGGAATCAAGCAA
ATTTTCGAATGGAAGGGAAAAACAAAAAACACCCTTCATCGCCATACAAA
AACATCAACGTGGAGAGCGTTGAACGTTGTTTGGATCAATGTACATATGA
AGGGTCCTGCAAAGCTGCCAATGTGGACACCAACAAGACTCCTTTAGAAT
GCCAACTCTTATCACACGACCAAAACGATAACAACCAATATATTGACGCT
TCGGGATTTTATTACTACGACACAGGAATAACACAGCTTTCCACCTTGAG
AGCAGTTCAGTATTCAAGCTCATGTTTCGTACCAAACACTTTTTCTTGCG
ATGTGGTGGACGGTAGCAAACTAGTGCAATCATCCACCAATTGTGGAGAG
TTGTTCGCTTACTTCAGTTTTGACGCAGAACAAGGAACCATCTTTCATCA
TTGTTCCGCACTTCCTGTTTGTTTTGCCAGCACAAGCGCCGGTTCCGAAA
TGATACTCAGTACAACAAATTGTTTGCTAAGATCGAAGGATGGGACGGGT
GCTAGCTACAAGCGAACTTTCCGCCGTGATTTCAGTAAAAAGAAGATATG
GACGACGTATTGCAGCGGAGTTCCAGCAAACTTTGATGACTTTCTTACCC
ATAATTTCGGCGGCTGTTACACGTCGTCAGGGTACGCTGATGACTTCTTA
ATGATGAGCAGCTATGAAGTACCGAGTACCCACTTCTCCATCCGAATGCA
GTCCTGGTTCATTCCCGAACACACCGGTTATTACCGATTCGGTGCGGCGT
GTAAATTGAGATGTGTTGTGTATTGTGGAACGAGTGAATCGACAAAGCAG
ATGGTTTTGAGAGATGACGACACATCGTGGCCAGGTGGTGCACTGATGGT
CACGTGAGACAATATCTCATGTATAACGCCGGATGTATCCAACTTTCGTC
GAATTCAGGCAGCGATGGCAACACTTTGATTATTAGCGATAATTGTATGA
GTGGACCGGATGCTGACAAACAAATCTATTTCCCAGAACTCGAGAATGAA
AAAGGAAGAAAAAGTAATTTGTTTATCTTTGCTTTTGATTAGTGGCTCAC
TCTCTTCCAACATCATACGATTGACAAAATGGAATCAAGCAAATTTTCGA
ATGGAAGGGAAAAACAAAAAACACCCTTCATCGCCATACAAAAACATCAA
CGTGGAGAGCGTTGAACGTTGTTTGGATCAATGTACATATGAAGGGTCCT
GCAAAGCTGCCAATGTGGACACCAACAAGACTCCTTTAGAATGCCAACTC
TTATCACACGACCAAAACGATAACAACCAATATATTGACGCTTCGGGATT
TTATTACTACGACACAGGAATAACACAGCTTTCCACCTTGAGAGCAGTTC
AGTATTCAAGCTCATGTTTCGTACCAAACACTTTTTCTTGCGATGTGGTG
GACGGTAGCAAACTAGTGCAATCATCCACCAATTGTGGAGAGTTGTTCGC
TTACTTCAGTTTTGACGCAGAACAAGGAACCATCTTTCATCATTGTTCCG
CACTTCCTGTTTGTTTTGCCAGCACAAGCGCCGGTTCCGAAATGATACTC
AGTACAACAAATTGTTTGCTAAGATCGAAGGATGGGACGGGTGCTAGCTA
CAAGCGAACTTTCCGCCGTGATTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002977XLOC_002977Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005235-proteinTCONS_00005235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005235-exon-sc0000051-1575043694:752205..752853TCONS_00005235-exon-sc0000051-1575043694:752205..752853Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1575043694:751329..751466TCONS_00005235-exon-sc0000051-1575043694:751329..751466Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1575043694:750421..751121TCONS_00005235-exon-sc0000051-1575043694:750421..751121Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1510915933:752205..752853TCONS_00005235-exon-sc0000051-1510915933:752205..752853Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1510915933:751329..751466TCONS_00005235-exon-sc0000051-1510915933:751329..751466Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1510915933:750421..751121TCONS_00005235-exon-sc0000051-1510915933:750421..751121Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1491911889:752205..752853TCONS_00005235-exon-sc0000051-1491911889:752205..752853Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1491911889:751329..751466TCONS_00005235-exon-sc0000051-1491911889:751329..751466Clytia hemisphaericaexon
TCONS_00005235-exon-sc0000051-1491911889:750421..751121TCONS_00005235-exon-sc0000051-1491911889:750421..751121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:750421..752853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0540991	0	0	0.149629	0.0591192	0.14265	0.0667735	1.09862	0.752791	1.34894	1.42248	20.3483	29.1593	8.5055	5.78088	1.5201	2.07029	30.5188	14.132	4.55928	3.72823	0.82692	1.12768	3.12709	5.60828	0.912845	0.284145	0.0923632	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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