TCONS_00005234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005234
Unique NameTCONS_00005234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005234 ID=TCONS_00005234|Name=TCONS_00005234|organism=Clytia hemisphaerica|type=transcript|length=562bp
NNAGCATGTGAGAAGAATGGAAGCATCGCATAATCATAATAAGAACTTCC
CTCCATGCCCCAAATCATCTTCAAGAAAAATTGGAGCGACTGAAAATTAT
CATCTTTGAATGTGAGGGAAGAAATGATATAAAGAGTACATTCTTACAta
gtaaaattattttatttcattttataaatatttcaataaatttatacata
gtaggaAGCAAACTTCCAGCCTTTTAATGATGCACATCAGCAAGAAGGca
gtttttaagatttttcattttttaatgtCAATAATATTTTTACTCTTTGT
ATATACTGCTCCACAGTGGTCGTCaTCTTTATGCACAATCTTTTTCACCG
ATATATAACAATTATACTCAACACGAAAATCTTGGCTGTCATTatttatc
atcatcatcctctTGTCCAACCGACCCTATCTCTCCCTTCCACTGTTGTT
GCTAGGCAACAAGGAGGACATAACCATTTTAAACGACAGCTTCTTTAGAG
ACGTTTTTTCTTGGTTGTTGAGATTCTCCGCCGAAAGTTTCAGTACCGTA
ACCGTAAGAACC
Run BLAST on NCBI

transcript from alignment at sc0000051:747481..749418-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005234 ID=TCONS_00005234|Name=TCONS_00005234|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at sc0000051:747481..749418- (Clytia hemisphaerica)
NNAGCATGTGAGAAGAATGGAAGCATCGCATAATCATAATAAGAACTTCC
CTCCATGCCCCAAATCATCTTCAAGAAAAATTGGAGCGACTGAAAATTAT
CATCTTTGAATGTGAGGGAAGAAATGATATAAAGAGTACATTCTTACATA
GTAAAATTATTTTATTTCATTTTATAAATATTTCAATAAATTTATACATA
GTAGGAAGCAAACTTCCAGCCTTTTAATGATGCACATCAGCAAGAAGGCA
GTTTTTAAGATTTTTCATTTTTTAATGTCAATAATATTTTTACTCTTTGT
ATATACTGCTCCACAGTGGTCGTCATTAGTTGGGTCGTTCAGCATAATTT
ACGGGAAAACATAAATATAATATGATCTAGCTGAAACTTTCTTCAGACCT
TCTCTATAGGATGGTTATACCTCAGGAAAAATTCCCCTAAAATCCCAAAG
GTGGAACATCCCTTTTTTGGGACATTTCTTTTTTCCCCAGGCAAAACCCT
AAGGGCGAAATTTTTTGAAAATTTCAAACTCATTTTCAGACATTATCAAG
TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAAAAACTATATAGAAGACTTTTAAACGGGTATAGCCGATTTCATT
ACCTAACTCAAGATAATTCACGCAGAAGATGCTATTTATGGTCAATTTTG
ACCATAAGTCTGGCGAAAAGTGGCGAAAAGTGGAACTTGCGCATGAAATA
TCTCGAGTTAGGTAGGGAAATCTGCTATAACCGTTTAAAAGTCTTCTATA
TAGTTTTTCGAGAGCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCT
GAGGTATAACCATCCTATAGAGAAGGTCTGGAGAAAGTTTCAGCTAGATC
TTATTTTTTTCCTACAAACAGCCTGTATTTTTGTAACACGACCACACTAC
ATCTTTATGCACAATCTTTTTCACCGATATATAACAATTATACTCAACAC
GAAAATCTTGGCTGTCATTATTTATCATCATCATCCTCTTGTCCAACCGA
CCCTATCTCTCCCTTCCACTGTTGTTGCTAGGCAACAAGGAGGACATAAC
CATTTTAAACGACAGCTTCTTTAGAGACGTTTTTTCTTGGTTGTTGAGAT
TCTCCGCCGAAAGTTTCAGTACCGTAACCGTAAGAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002976XLOC_002976Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005234-exon-sc0000051-1575043694:749095..749418TCONS_00005234-exon-sc0000051-1575043694:749095..749418Clytia hemisphaericaexon
TCONS_00005234-exon-sc0000051-1575043694:747481..747718TCONS_00005234-exon-sc0000051-1575043694:747481..747718Clytia hemisphaericaexon
TCONS_00005234-exon-sc0000051-1510915933:749095..749418TCONS_00005234-exon-sc0000051-1510915933:749095..749418Clytia hemisphaericaexon
TCONS_00005234-exon-sc0000051-1510915933:747481..747718TCONS_00005234-exon-sc0000051-1510915933:747481..747718Clytia hemisphaericaexon
TCONS_00005234-exon-sc0000051-1491911889:749095..749418TCONS_00005234-exon-sc0000051-1491911889:749095..749418Clytia hemisphaericaexon
TCONS_00005234-exon-sc0000051-1491911889:747481..747718TCONS_00005234-exon-sc0000051-1491911889:747481..747718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:747481..749418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232719	0.238359	0.162545	0	0	0.107101	0.258426	0.203249	0.79811	0.839242	0	0.460475	9.98906	12.4365	4.98111	3.51132	0.532889	1.28993	9.41974	6.04071	3.34089	2.41726	0.123767	1.25888	1.2533	2.55018	0.634192	0.496245	0.111551	0.227306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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