TCONS_00005232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005232
Unique NameTCONS_00005232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005232 ID=TCONS_00005232|Name=TCONS_00005232|organism=Clytia hemisphaerica|type=transcript|length=1051bp
caaactttcgcgagcagaagtTTTGGCCTTTTTCTCGAAAGTATATAAAT
GACTTTAAAAATTCTCAACAGAGCAATTCATtaaagtttatgcttgcgaa
aaattctcaaaaaaattggaaatttataAAACATGGCGTATTATTATcct
tttaatgcctttttaaagtcaaagagcaaccgtctttagcagatttaagg
aatatttttcacttttaaggcaatttttgaattctcatttttatacaACG
ATTAGCAAAAGTAAATGATGCAAATTCTGCAAGTTTCTGCTTGCAAAGGT
TTGTATGCCTAAAGTAATTGATTAACTAAAATCTGGTTGCCCATATCAAC
AGCTGCTTTGAAAGAACTTGAGGTCCCTTTTTctccttcaaaaaatttgt
atttttggatTAAAAGGACCATGGTCCACTTTACCCCACTCCATTGACGC
GCTaatgataaaaagaaacaatttttctttttccattgaTACACATTTTA
CATACTGGGTTATTTGGAGGAGAAAAAGGAACTATAATGAACAATTCTAT
CAGTTCAAAGAATCAGCTCTTTGCATATATACATTGTGGTCCCATTTACC
CAAACCCATAGTTTGATTAACCCGAAATCCTTGGGTAAAAAGGGACTGCT
GTTTTCCCCNAAGATTAAATGGCAATATAAAAATGCTGCTTCCTTCATTG
ATGCTTATTATGAAAAGAAGATAAAAGCATCCAACGAGTCGGTTTTGGTT
CCGGCAACTGATCTCGATGATCGTGGAAGAGTTCCTCGCCACTCTTTGGG
AGattttctgtTGAATATGACGTGCTTGCCAACGATCACTGGTGAATCTT
TGGTTAACTTAAGATTGAACATCACTGTCATCACAGCTGGTCNCTTTAAC
TTAAGAGTACTTTcagaacattaaaaaaaaaacaatgcaacCTTAGTCAA
ACTTTCACTGGTAAATAAACCAAACGTTCAAATAGCCCTTAGGTCGCCAT
TATGGATTATTACAACCAAAAAGTTTGGATTTTGATAACACAAGTAAATA
A
Run BLAST on NCBI

transcript from alignment at sc0000051:679477..681379-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005232 ID=TCONS_00005232|Name=TCONS_00005232|organism=Clytia hemisphaerica|type=transcript|length=1903bp|location=Sequence derived from alignment at sc0000051:679477..681379- (Clytia hemisphaerica)
CAAACTTTCGCGAGCAGAAGTTTTGGCCTTTTTCTCGAAAGTATATAAAT
GACTTTAAAAATTCTCAACAGAGCAATTCATTAAAGTTTATGCTTGCGAA
AAATTCTCAAAAAAATTGGAAATTTATAAAACATGGCGTATTATTATCCT
TTTAATGCCTTTTTAAAGTCAAAGAGCAACCGTCTTTAGCAGATTTAAGG
AATATTTTTCACTTTTAAGGCAATTTTTGAATTCTCATTTTTATACAACG
ATTAGCAAAAGTAAATGATGCAAATTCTGCAAGTTTCTGCTTGCAAAGGT
TTGTATGCCTAAAGTAATTGATTAACTAAAATCTGGTTGCCCATATCAAC
AGCTGCTTTGAAAGAACTTGAGGTCCCTTTTTCTCCTTCAAAAAATTTGT
ATTTTTGGATTAAAAGGACCATGGTCCACTTTACCCCACTCCATTGACGC
GCTAATGATAAAAAGAAACAATTTTTCTTTTTCCATTGATACACATTTTA
CATACTGGGTTATTTGGAGGAGAAAAAGGAACTATAATGAACAATTCTAT
CAGTTCAAAGAATCAGCTCTTTGCATATATACATTGTGGTCCCATTTACC
CAAACCCATAGTTTGATTAACCCGAAATCCTTGGGTAAAAAGGGACTGCT
GTTTTCCCCNAAGATTAAATGGCAATATAAAAATGTGAGTTTAGTTAACA
ACAATATTTCAATCGTTTAGTTTATCTGAATCAATTATAATAATGTTGAA
TCAAGAATTAGTAATTCGGAATGCTGCTTAGTGCAACAACATCTTATCCG
CAATTAATGTTTTCTTCATTTGAAATTGTTTTAAATTTTAACGTTTTAGT
TTTTTGGACATGAATTTTGAACTGATGAACTAAACTTAAAAAGTAATACA
CCAAATTAACGATGCCAAAATAATTTTTGAAAGATTTATTTTCTGCCTAC
AATATTAAATCANTTAATCAATTTCAACATCAAAACAGTCCTTTTTTACC
CCAACTGGCTATACTGGAAGATTTCTGAAAGTTCTCCTAGGGCAACCCAG
GGTATGACCCAAACATACACTGAACATTTTCAGGTCATGCCTGGGTCAAA
ATTGAGGCTCTGGTCACAAAATTTGACAGATACGCCAGCTCATTGTACCC
TATGCATCCCTGGTATGGATTCCAGTTTCAAATCAATTCCTGTGCGATAA
TCTAGAAATGGTTCAAAGAAAAAGGGCTCGTTTTGTTTATTCCAATTGGT
CTTGGGATTTTAGCCCTACATAACCTGGAGATTGGATTGTGAGCCTGNTC
AGGCTGCTTCCTTCATTGATGCTTATTATGAAAAGAAGATAAAAGCATCC
AACGAGTCGGTTTTGGTTCCGGCAACTGATCTCGATGATCGTGGAAGAGT
TCCTCGCCACTCTTTGGGAGGTTTGTTGTGTGTTTTCTTTCCACTTTTAA
GATTCCGTTTTGAATTTTTGAACGGTGTCTGGCATTGCGCTTAAGTCTAA
GTAAATATTTAATGTTTTTGAAACGTCAACCACTGGTGCAAATTAAAAGA
AATTGGAAAAATTAAGATAGCTTGTTTAGGTGACTTCCATAAAGAATATC
TGAAACACAGATATCACGTAGTTTGAGATCAGTGATTCAAACGTCTTTTT
GTAGATTTTCTGTTGAATATGACGTGCTTGCCAACGATCACTGGTGAATC
TTTGGTTAACTTAAGATTGAACATCACTGTCATCACAGCTGGTCNCTTTA
ACTTAAGAGTACTTTCAGAACATTAAAAAAAAAACAATGCAACCTTAGTC
AAACTTTCACTGGTAAATAAACCAAACGTTCAAATAGCCCTTAGGTCGCC
ATTATGGATTATTACAACCAAAAAGTTTGGATTTTGATAACACAAGTAAA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002974XLOC_002974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005232-exon-sc0000051-1575043694:680696..681379TCONS_00005232-exon-sc0000051-1575043694:680696..681379Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1575043694:679960..680077TCONS_00005232-exon-sc0000051-1575043694:679960..680077Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1575043694:679477..679725TCONS_00005232-exon-sc0000051-1575043694:679477..679725Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1510915933:680696..681379TCONS_00005232-exon-sc0000051-1510915933:680696..681379Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1510915933:679960..680077TCONS_00005232-exon-sc0000051-1510915933:679960..680077Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1510915933:679477..679725TCONS_00005232-exon-sc0000051-1510915933:679477..679725Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1491911889:680696..681379TCONS_00005232-exon-sc0000051-1491911889:680696..681379Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1491911889:679960..680077TCONS_00005232-exon-sc0000051-1491911889:679960..680077Clytia hemisphaericaexon
TCONS_00005232-exon-sc0000051-1491911889:679477..679725TCONS_00005232-exon-sc0000051-1491911889:679477..679725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:679477..681379 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.04497	3.78013	4.38909	3.6406	7.04587	4.75952	3.95451	4.41216	7.13679	6.25852	7.47049	5.41591	3.53086	3.84145	3.63671	4.51896	5.18743	5.58564	2.77701	4.82762	3.70721	3.45753	8.61248	6.58829	2.08097	2.05909	3.75541	2.898	7.90357	6.62305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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