TCONS_00005231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005231
Unique NameTCONS_00005231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005231 ID=TCONS_00005231|Name=TCONS_00005231|organism=Clytia hemisphaerica|type=transcript|length=1576bp
TTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATGA
TTTGAGCCATGGAGAGGAGGCGAAGGATAAAGAGAAGAACAAAACGAGTG
TCTTTTACATGGCTGTTGGAGTGATCTTCAGTTTGTTGTTACTGATTGCC
ACAGCTGTTTGTTTTCTTCACATACGAGCTATCCCAAAGAATGAGGACGA
AAACTTGTTATTAAACCAAGTCGATGGAAGTGTTCACAACAGTACAGCTG
GTGTTAACCATCCCCCACAGAAATCCACTGCAATTCCTGAAGCTCTTCGT
AAGGTCAGAGCGGAACAGCAACTAAAGGAAATGTTATACAATATGAAAGA
CTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGCAAGAGG
GTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAGAGTGGC
GAAGAATTCAAAGTCATTATCAAAACTGTCACTGaGCAAGCATCGACAGA
GCAACTTTTGTTATTTCTGGCAGAGGCGTGTATGTTGAAACGTACCACAC
ACCATCAAGTATCTTCACCCATCAATATTTGTTCTGATGGGCCAACACCT
CTTGTCATTTATCCCTTCATGAACAGAGGCAATTTAAAGAACTACCTTCG
TCTCACAAGGACGGCCGAACCACTGTCAAGGccaCTGACAACCAGAGACA
TAGTGAATATCGCATCACAATTGGCCCGCGGGTTGAATTATTTGAGTAGA
AGAAGACTTATTCACAAAGATGTAGCTACAAGAAATTGCGTGGTTGACGA
AGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGATTTCTTCC
CTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGGTGCGTTGG
ATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCCTCCGATGT
CtggAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGC
CATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGG
TTGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGAT
GGCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCactttcaacaaa
ttatggTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGA
ACGGAAAACATTGTCCGAGACTGTCCGAATTATAGAAAGGATATTGAAGG
CTTTATCATCTTGAAATTGCGCAAGAAAGTCAATTCAATAAAACGGAGAT
TTCGGAGGAAACAAATCAGTCATTGATtgcttctttattttttttttaat
tgtaaattcTTTAACCTTTTTGTATTTATaacatattttattttttaagt
ttttccattttgtattttaaatACCATACAAATATAAGTATAAAAGATTG
AATGAATCAAATTGACCACTTCCAACGTGATATTTTAATGCTATCAAAGG
TTCCTTCTCTTGAACTAACTGAGCAATCGTTACTCAATTTCCTGGACAGA
TATGttcgagccaaaaatcgaaaatc
Run BLAST on NCBI

protein sequence of TCONS_00005231-protein

>TCONS_00005231-protein ID=TCONS_00005231-protein|Name=TCONS_00005231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
LDVNSKDERKEDGAGNDLSHGEEAKDKEKNKTSVFYMAVGVIFSLLLLIA
TAVCFLHIRAIPKNEDENLLLNQVDGSVHNSTAGVNHPPQKSTAIPEALR
KVRAEQQLKEMLYNMKDFAVRRHFVSIGNAMQEGSFGRMFMGTLVSAESG
EEFKVIIKTVTEQASTEQLLLFLAEACMLKRTTHHQVSSPINICSDGPTP
LVIYPFMNRGNLKNYLRLTRTAEPLSRPLTTRDIVNIASQLARGLNYLSR
RRLIHKDVATRNCVVDEELNVKIADNALSRDFFPGDYHCLGDNENRPVRW
MATECLECFEYSPASDVWSYGVLLWELCSLAQTPYASVDPFEMLTYLKSG
LRLPQPENCPDDFFTVMACCWALSPDDRPHFQQIMVCLDAFLQKLNAFI
Run BLAST on NCBI

transcript from alignment at sc0000051:673943..679158-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005231 ID=TCONS_00005231|Name=TCONS_00005231|organism=Clytia hemisphaerica|type=transcript|length=5216bp|location=Sequence derived from alignment at sc0000051:673943..679158- (Clytia hemisphaerica)
TTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATGG
TAAGAGTTTAGTGTTTTATTTAATTTATCTTTAAACTGAGAAACATGGAA
GTAGTTGAAACTCCGCTGAATTGGCACTGTCACTTTATTCTCACTTGCTG
ATTGCTTAATCTATGTTTGCCCTTTATTGCAGATATTACTTGAAGTAAAA
AATTAACCTCGTCTTTCTTTGTTTTTTGCTCTTCAGTCTTTTGCGGTGAC
ACTACTGTGAGTGTGTTTTATTCCTTCTTTTTTAGATTTGAGCCATGGAG
AGGAGGCGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCT
GTTGGAGTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTT
TCTTCACATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAA
ACCAAGTGTAAGATCGCAAATCCTTATCCTTAAAAATATCTCTCTGCTGC
TTATTTTTCTGTTTATTCTTCCTTTTTATTAACTTTCTTCAATCTCCTTG
CTCTTAACACTGACTACTTCATATTTTTCTTTCCCAGCGATGGAAGTGTT
CACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGCAAT
TCCTGAAGCTCTTCGTAAGGTCAGAGGTAAGAGTGGCTTTGTCTCACGTT
TTAATAAAATCTTCAAAAATTAGATTACTGCAGTACATTAAAAACATGAA
TTTTGAAGAGTAGAAGCCCGACTGCTGCGCTTATTTTCAATGTTTTTGAT
TTTAAGATTACTGTTTGTTCATTACATTATATTCTGATATTATTTTCCTC
CACAGCGGAACAGCAACTAAAGGAAATGTTATACAATATGAAAGACTTTG
CTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGCAAGAGGGTTCG
TTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAGAGTGGCGAAGA
ATTCAAAGTCATTATCAAAACTGTCACTGGTAAAAGATGAAATTAATTAT
TTCAGTATCAAATATAAATCTTTTATTACAAATTTCTTCACTCAGAACTA
ATCCAATCCATTGTTCATTTTTTATGTCCGTCGATTCCTTTCCATAACTT
TGACTGCAGTAGGTTGACATCTACAGATTTTAAAGATATTACAGATTCCA
CTATTAGGTTACATCACAATAAAACATTTTACCATTTTAAACAACGTTCT
CTTCTTTGTGTTTTCCAGAGCAAGCATCGACAGAGCAACTTTTGTTATTT
CTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTTC
ACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCCT
TCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGCC
GAACCACTGTCAAGGGTAAATTTGTTGTTAGTCATCTTATCAGGAGAAAA
AGTCTGAGAAAAGGACTATATTTATGAGAGAGAGAGAGAGAGCCACACGA
TTTTTACTCTATGTAAGATTTTCCTACTCTTTTAATAGTTTTCAATTTTC
TTCAAGAGCTGTTATGCTTTAAGTTAAATAATCTTCGCCTAACCAGAACG
GCTAAACTACTGCCAAGGGTAACTTCTTGTTGCTTTACACTGGTACACTG
GTCTAAATGCGTGATGACTGTTCCTAAAAAATCAAAATCAATGCACACAA
AACAACGTTACTAAAAAATTGTTCCAAGGGGTGATGATATTTATGTACCT
TATTACACGAATATTACTAGTCATTTTATTAACACGAATTGAAAAATTTC
TTTTTAATAAAAACCCCTTAATTAAAAACAGAAAAATTCGTGTTAATTTC
AGATCGTGCAAATTTCAAGGCCGTTGAATACTTGCTTGGTAATCTAATAT
TCGTGTAATAAGGTATCTAATTTTTTTGTTTTTCAGCCACTGACAACCAG
AGACATAGTGAATATCGCATCACAATTGGCCCGCGGGTTGAATTATTTGA
GTAGAAGAAGACTTATTCACAAAGATGTAGCTACAAGAAATTGCGTGTAA
GCATCCACCTTCTAATTTTCCCCTGGTTCCTTAAGCTTTACTCTTGAGGT
TGTATGCTTCTCTTTAGAAGACGATAGCTTCTGTACTATATTGCCTTATT
CAGTCCCTCTTAGTCCGAAACAATTTTTTACTCGGACTTGATCGAGACTA
CAGTTTTCAAATTGGAGTAAGGTAAGGAAGTAACTAAGTTGAGGAATGAA
AACATTGGAACCGATCAGATCCCCCACAATTTTTCAAGTTTGAGTAGGCT
CGAGTTAACCGAACTTCCGAATTTTAAGAAGTGAGTCAGTCTTAAGTTGT
TTCCTCAATCGAACTTGTCGAACTAGTGGAACTTGTCGAACTTTCTCGAA
GTGAACAATTTGTTATGTTTTTGTTAAGTTCGACATACGAGTCAGATCGA
ATAAGTCTGAGTTTTTTGATTTTTGAACGAGTTCGAGTAAAATCAAAAGG
CCTTTTCAACAACAAATTGTATTAGTAGCGGGTGGTAGGTGAATTACTAT
CTCTCAATTCAGACGAAGAAGTCTCGCAAAACTTTCTTTGTTTTCTACCA
AAAAGAGGTTTGGGATCTAGGTTGAGTGTCTGATGAGTTTGTGTGTGGTT
GACAGTTTGATTCGTTAATCAAATGAAAGCGTTTTACTTGTGGTTTTGAA
GTGGAAGAGCAAATGCAATTACTCATCACCAATATCCTGACCACAACCAA
TTTCCATCTTTCCATGTCCTAACGCACTAAAACAAAAACGTCAGACACGT
AGTAGCAACCAACCCTTTCGAAATCTTCATGGGATTTATTGAAACAATAT
TTACAGGAGATTTACCAATATATTTTGACCACCTTTCTTAATTGGATGCA
AACTTTTCTTCATATTTATAATGAGACTTCCGCCCGTTTCTACAGTGAGG
TCACGTGCCACTTCTAGATTTTGCTTTGGTGAAATTTACGTTTCAGTTGG
TTCCAATCAATGACTTCATAAAGTCATTTAGGACAACAAATGTTCAATAA
CAATAATAAAAAACAAAAGGGTATAATGAAAACATATTCAAATGGGAACT
AGACTTTTTAAGGAAAACAAAAGCAATAAATTAAACGAGTATTCTAAGTA
GCCATGGTACAAATATTGCTTCATATTATGTTCAATTTCCCTCAACTGTT
ACTTCAAATTGGTTTCTTTAAATTACTTTAAGGTGTTTCCATTCTCATCC
CCATACCCTCTTTTTATTTCCCAGGGTTGACGAAGAGTTGAACGTGAAGA
TCGCTGACAATGCTTTATCACGTGATTTCTTCCCTGGTGATTATCATTGT
TTGGGTGATAACGAGAATCGGCCGGTGCGTTGGATGGCTACCGAGTGTTT
AGAATGCTTCGAATATTCTCCAGCCTCCGATGTCGTAAGTCTTTATCTCA
ATTTTCTGGTGGATAAATTCAAATATGCTAGTGAACCAAAGTAATCCTAT
TCGTGGTTTGCTAGAAAAGGGTCAGTCTAACGACTGACTACACTCCTGTA
GCCTTTCTTGATGTTAAATGTAGGCTACATGCGTAAAAAGCTTAGCGATT
CAAAGCAGGAATTCAGTTTAAGAAGTTCTGGAAGTTTTTTTTTTACCACT
CTCAATTTCTTTTTTACCACTCAATTTCTTTTTATCCCATTTAATTTTTG
AATCAAAAAAAATATTTCCATCACTTTTTGAAAATACATAACTTGGTCAC
CTGCGTTACGTAAATTAGTCAACTTCGATATCTGTGGTCCATTGTTAAAA
GAGGTAAACAGAGTATTCTGGTGACGTTGGAAAGTTTCAAACTATCTCTC
GATGGAAGAATTGCATCAATAACAAAATTTGGCAAAGCTTTGGTTTCCGT
TATGCTTCCCTTCGACTTCCTCGCTCTCGCTTTGATCTTTTGATACTCTC
GCCTTCTCTCACACGCATCTAACTGTATCTGCACTCTGCAATGCAATTCT
TCTCTAAATCTTAAATGAGAAATCACCAAAGGGCCGCCACGTGCACAAAT
TTTCATTTCCTAAAACTTTCTAAAAAAGAGTCGTTTATTAGTTTGTGATT
TGTGTTTTGACCAAACGCGTTCTTTTTGAAGTCTTTCTTTCGCCACATTT
TTTAATAATGATTTCAGTCGTCAGTTGTTTTGTTATCTTGATGCATGCGG
TCGGCGCGTCTGGCTCATCATCTAGCGGACGAAATTTCATTCATGAAAAG
TCCATTAAAAGCGTAACCAGAGTGCCACATTTATTTCCAAAAATACAGCA
CTCCTTTAGTTAGTGTATTAGTGTTATGTTTTGGATTCGTCAGAGACAAC
TGTAGAATTCAACTGAAAGTGTAGTTTTGACAATAAGTGAAGAATGAACT
CTTACATAAACCATTTCACGGGCGTACCATTCGGGCACACCATATAATAA
TCATAGGACGTTAGATAGACGTCGTTTTGGCGTCTTGTACGTACCAACAA
TGATTATTCGAATCTATGGGGAAACCCTTTTCTTTTTTTAGTGGAGTTAT
GGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCCATACGCTAG
CGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGTTGAGATTAC
CACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATGGCGTGCTGC
TGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAATTATGGTGTG
TTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAACGGAAAACA
TTGTCCGAGACTGTCCGAATTATAGAAAGGATATTGAAGGCTTTATCATC
TTGAAATTGCGCAAGAAAGTCAATTCAATAAAACGGAGATTTCGGAGGAA
ACAAATCAGTCATTGATTGCTTCTTTATTTTTTTTTTAATTGTAAATTCT
TTAACCTTTTTGTATTTATAACATATTTTATTTTTTAAGTTTTTCCATTT
TGTATTTTAAATACCATACAAATATAAGTATAAAAGATTGAATGAATCAA
ATTGACCACTTCCAACGTGATATTTTAATGCTATCAAAGGTTCCTTCTCT
TGAACTAACTGAGCAATCGTTACTCAATTTCCTGGACAGATATGTTCGAG
CCAAAAATCGAAAATC

Coding sequence (CDS) from alignment at sc0000051:673943..679158-

>TCONS_00005231 ID=TCONS_00005231|Name=TCONS_00005231|organism=Clytia hemisphaerica|type=CDS|length=9600bp|location=Sequence derived from alignment at sc0000051:673943..679158- (Clytia hemisphaerica)
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
TGGAGTTATGGGGTGTTGCTATGGGAACTGTGTTCGTTAGCGCAAACGCC
ATACGCTAGCGTCGATCCTTTCGAAATGTTGACGTATCTCAAGTCCGGGT
TGAGATTACCACAACCGGAAAATTGCCCGGACGATTTTTTTACCGTGATG
GCGTGCTGCTGGGCACTGTCACCTGATGACCGCCCTCACTTTCAACAAAT
TATGGTGTGTTTGGATGCCTTCTTGCAAAAGCTGAACGCCTTCATTTGAG
GTTGACGAAGAGTTGAACGTGAAGATCGCTGACAATGCTTTATCACGTGA
TTTCTTCCCTGGTGATTATCATTGTTTGGGTGATAACGAGAATCGGCCGG
TGCGTTGGATGGCTACCGAGTGTTTAGAATGCTTCGAATATTCTCCAGCC
TCCGATGTCCCACTGACAACCAGAGACATAGTGAATATCGCATCACAATT
GGCCCGCGGGTTGAATTATTTGAGTAGAAGAAGACTTATTCACAAAGATG
TAGCTACAAGAAATTGCGTAGCAAGCATCGACAGAGCAACTTTTGTTATT
TCTGGCAGAGGCGTGTATGTTGAAACGTACCACACACCATCAAGTATCTT
CACCCATCAATATTTGTTCTGATGGGCCAACACCTCTTGTCATTTATCCC
TTCATGAACAGAGGCAATTTAAAGAACTACCTTCGTCTCACAAGGACGGC
CGAACCACTGTCAAGGCGGAACAGCAACTAAAGGAAATGTTATACAATAT
GAAAGACTTTGCTGTGCGTCGCCATTTTGTCTCCATTGGTAACGCCATGC
AAGAGGGTTCGTTCGGCCGCATGTTCATGGGCACGTTGGTCAGTGCGGAG
AGTGGCGAAGAATTCAAAGTCATTATCAAAACTGTCACTGCGATGGAAGT
GTTCACAACAGTACAGCTGGTGTTAACCATCCCCCACAGAAATCCACTGC
AATTCCTGAAGCTCTTCGTAAGGTCAGAGATTTGAGCCATGGAGAGGAGG
CGAAGGATAAAGAGAAGAACAAAACGAGTGTCTTTTACATGGCTGTTGGA
GTGATCTTCAGTTTGTTGTTACTGATTGCCACAGCTGTTTGTTTTCTTCA
CATACGAGCTATCCCAAAGAATGAGGACGAAAACTTGTTATTAAACCAAG
TTTAGACGTCAATTCTAAGGACGAGAGAAAGGAGGATGGAGCCGGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002973XLOC_002973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005231-exon-sc0000051-1575043694:679110..679158TCONS_00005231-exon-sc0000051-1575043694:679110..679158Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1575043694:678702..678873TCONS_00005231-exon-sc0000051-1575043694:678702..678873Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1575043694:678483..678571TCONS_00005231-exon-sc0000051-1575043694:678483..678571Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1575043694:678130..678303TCONS_00005231-exon-sc0000051-1575043694:678130..678303Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1575043694:677694..677890TCONS_00005231-exon-sc0000051-1575043694:677694..677890Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1575043694:677063..677172TCONS_00005231-exon-sc0000051-1575043694:677063..677172Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1575043694:675675..675834TCONS_00005231-exon-sc0000051-1575043694:675675..675834Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1575043694:673943..674567TCONS_00005231-exon-sc0000051-1575043694:673943..674567Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:679110..679158TCONS_00005231-exon-sc0000051-1510915933:679110..679158Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:678702..678873TCONS_00005231-exon-sc0000051-1510915933:678702..678873Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:678483..678571TCONS_00005231-exon-sc0000051-1510915933:678483..678571Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:678130..678303TCONS_00005231-exon-sc0000051-1510915933:678130..678303Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:677694..677890TCONS_00005231-exon-sc0000051-1510915933:677694..677890Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:677063..677172TCONS_00005231-exon-sc0000051-1510915933:677063..677172Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:675675..675834TCONS_00005231-exon-sc0000051-1510915933:675675..675834Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1510915933:673943..674567TCONS_00005231-exon-sc0000051-1510915933:673943..674567Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:679110..679158TCONS_00005231-exon-sc0000051-1491911889:679110..679158Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:678702..678873TCONS_00005231-exon-sc0000051-1491911889:678702..678873Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:678483..678571TCONS_00005231-exon-sc0000051-1491911889:678483..678571Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:678130..678303TCONS_00005231-exon-sc0000051-1491911889:678130..678303Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:677694..677890TCONS_00005231-exon-sc0000051-1491911889:677694..677890Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:677063..677172TCONS_00005231-exon-sc0000051-1491911889:677063..677172Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:675675..675834TCONS_00005231-exon-sc0000051-1491911889:675675..675834Clytia hemisphaericaexon
TCONS_00005231-exon-sc0000051-1491911889:673943..674567TCONS_00005231-exon-sc0000051-1491911889:673943..674567Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005231-proteinTCONS_00005231-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:673943..679158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3796	9.89553	11.7247	13.5695	30.2042	20.3554	18.018	17.1806	17.8241	22.4844	17.9061	17.2154	12.4966	14.7525	12.8948	14.107	14.5342	18.3318	12.7459	14.3193	11.618	11.3459	28.3586	25.214	9.55755	9.6987	11.4233	9.9885	22.0076	22.4516
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR008266Tyr_kinase_AS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00005231 vs. Swiss-Prot (Human)
Match: RYK (Tyrosine-protein kinase RYK OS=Homo sapiens GN=RYK PE=1 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 5.734e-105
Identity = 174/384 (45.31%), Postives = 245/384 (63.80%), Query Frame = 1 
Query:   94 TSVFYMAVGVIFSLLLLIATAVCFLHIRAIPKNE--DENLLLNQVDGSVHNSTAGVNH----PPQKSTAIPEALRKVRAEQQ------LKEMLYNMKDFAVRRHFVSIGNAMQEGSFGRMFMGTLV-SAESGEEFKVIIKTVTEQASTEQLLLFLAEACMLKRTTHHQVSSPI-NIC-SDGPTPLVIYPFMNRGNLKNYLRLTRTAEPLS-RPLTTRDIVNIASQLARGLNYLSRRRLIHKDVATRNCVVDEELNVKIADNALSRDFFPGDYHCLGDNENRPVRWMATECLECFEYSPASDVWSYGVLLWELCSLAQTPYASVDPFEMLTYLKSGLRLPQPENCPDDFFTVMACCWALSPDDRPHFQQIMVCLDAFLQKLNAFI 1197
            T VFY++VGV  +++ L+A  +  LH+  + + E  D     +   G    ST    +     P  +T I  +   +R E+       L E    +KD A+ R  +++ + +QEG+FGR+F G L+   +  +E +  +KTV +QAS  Q+ + L E+C L R  HH+   PI ++C  +G  P+VI P+MN GNLK +LR  +  E  + + ++ +D+V++A Q+A G++YL+RR +IHKD+A RNCV+D+ L VKI DNALSRD FP DYHCLGDNENRPVRWMA E L   E+S ASDVW++GV LWEL +L QTPY  +DPFEM  YLK G R+ QP NCPD+ F VMACCWAL P++RP FQQ++ CL  F   L A++
Sbjct:  223 TRVFYISVGVCCAVIFLVAIILAVLHLHNMKRIELDDSISASSSSQGLSQPSTQTTQYLRADTPNNATPI-TSYPTLRIEKNDLRSVTLLEAKGKVKDIAISRERITLKDVLQEGTFGRIFHGILIDEKDPNKEKQAFVKTVKDQASEIQVTMMLTESCKL-RGLHHRNLLPITHVCIEEGEKPMVILPYMNWGNLKLFLRQCKLVEANNPQAISQQDLVHMAIQIACGMSYLARREVIHKDLAARNCVIDDTLQVKITDNALSRDLFPMDYHCLGDNENRPVRWMALESLVNNEFSSASDVWAFGVTLWELMTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCPDELFAVMACCWALDPEERPKFQQLVQCLTEFHAALGAYV 604
The following BLAST results are available for this feature:
BLAST of TCONS_00005231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RYK5.734e-10545.31Tyrosine-protein kinase RYK OS=Homo sapiens GN=RYK... [more]
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