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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005230 ID=TCONS_00005230|Name=TCONS_00005230|organism=Clytia hemisphaerica|type=transcript|length=3183bp
CTTGTTTGTGTGGTTGAAagactgaaaatgaaattatttttgactgtCTT
AGTGTTGGTCTACACTTTCCAACCCACCGCAATGCAACAGGTGTATAAGG
ATGACAAGAAATCATGGTGCTATTATATGACGTTCAATGGTGCATGTCAA
TGGAATACCCTGGTCCAAACTAATTGCCCTGGAACCTGCGCAAATAGAGA
TGTGAAATGTTTCTACATTGAACCAAGGAGAAGGCGTGATTGCCATGGAA
ACGACCGCACCTGTGGTATAGGACGATACACAGGTTGTTGTTGGTCACCT
CTAGAGAAACCCGGATCTGGTCCATGGTGTTATCATCCTGCAGCTGGCAC
TGGTCCTAATAAACCAGCTTACGGTTGCAGCATTATTCGTGCACTTGACA
AGTACGCTCCTTCTGGCTATTATTATATCATGAACAACAAGAAGCAAGCC
ATTCGAACATATTGTCAGATGAAAGATTATGAAGTCAACTAAATGGATTG
CATATCAATAAATTACATGATCGAAAAAGTAAAACTATTCTTTTCTTTTG
GTTTATGTTCTAGAAATTTCCTTTGATTTTAATCTAGTTTATTTAGATTC
TCAAGAAACTTTGCTCCTAGGTATAGATTCAGAACGAGACCTTCAATCGC
ACCAGGTTTAAAGAGATGGACTATTTTCTATCTATCTATAAACAGTAAAT
TTACAAAACGTACCTAATCATTACAAAAAATTCTACACTTCGAACTCCTT
TTGTTTTGGCagttcattatcttttgatatcgTGTCCTCGTTTTCAATTA
TCAGTTCGTCATAAGAATTATCTCCATTATGTAAATTATCTCCACCATAT
TCTTGGAGTGGAATTACCGTGGATGTGTTATTATTTTCTATAACCTCCGT
CTTTTTCGGTGGAGCGacacttttcattttgaatcgaCTACTCGTCGAAG
GTTTTGGTTTTGCTTCGGATATTAAAGGCTGTCTTGAAGGAGAAGATAAA
acgctttcactttcgtttatcGAATCGTTCGGTGAAAAACACCTTTCCGG
TGTTTCAATCGAAAACGTCACTTCTTTTGTTCTTGGTGACTCTAAGTNTA
CACCTTTCCGGTGTTTCAATCGAAAACGTTActtcttttgtttttggcgA
CTCTAAGTTCACTTTCGTTTCAATTGGTTCTTTTTGTTTCACGCTTGGTT
CTGATTGGTTCTCATCTTGTTTCTCGGGATCTGATTGGCTCGTTGTCGGT
GGTTTAAACAAATCAGCCAATCGCTTTTCATCTGGCGATGATTGATAACT
TTCGATGGAAGAATTCGACTTCTGTTTATCAAATCGATTAATGGTTTCCG
TGACCAGAACTTTCCCCGTCTTTTTGACGGCTTGAACACGTGAGCTGCCC
TTGATATTTTGCAGAACGTCAGCATAAGGGTGATTTTGCGGATCAAACAT
ATGGTGTTCGTTATCTTGGTCGGGATGTCGGGACGCAGAGCTCATCGTGC
GATGAATGGATGCTTTGCGCTTCTTCCGACTGTTCTTCTTAAAGATCTTG
CCACCGAAGATACCTCCGCTACTACTCTCACTCGGTATCAATAAATGATC
GATTTTATCGAGTCCTGTATTCGGCTCAGGTACTACATCGATTTGCGCCG
AAACATGGAAGCGGCCCACTGTGAAATTTCGATTTCGAACAACTTCGAGG
TTATTGAAAGTCCAATCATCGATTGTTTGAAGTTGAATGTCATCCTCACT
CATTCCGTCAAAAGGATCATCCAATTTATCTTGGACTCCTTGTAGTGCAC
CGAATACTGCTGCAACGAGTACTGCGATGTAGTAAGAACCCCATGCCCCT
GCGTTTGATGTTTCTTTCCTTGACAGATAGACAAAATAGGGCGATAAGAT
GATAGGAAGGAACAGAATCAATACTTTGTTGAACGAACGGATGGAGCGAG
GAGAGCGATATTCCCTCACTACGCGAAGTCTTTCAAAGGATAAACACAGC
ATATTTAATAAATGAATTACTCGGGATATGATTGCAGTATTGGAAGGGAG
ATTGCTCGCTCGCACTCTTTCAATCAGCTGGTTTGCATCGCTGAAGTCTT
CGTACAAACAACGTGCAATATAACGTCTTCGTTCCACTTTGTCTGTCAGT
AAATATTCTCTCAAGTTAAACatcatatttttcactttccCATGCACGGA
ATCCAACCAATCGTCTTCTAAGCCCGCTGCAACTTTCCATTCTCGCATGC
AGAAAAACCATAGCATTGATGATGATTTGAAGTTAGCTAAGTCTTCCAAT
ACCTTTTCTCTCCGTTGAAAGTCAGTGTTTATTGAGAAAGCGAGCGGGAA
TACGATAGGTGAAACAAACAGACTGACATGGAAATCGAACGAAATGTCAA
AATAATCGAAAATATAAACGGATAAAGCTGCTAACATCATCTGTAGGATG
accatgaaattgaaattagcAATAAAACTTCTGCAAATCGAGATATTGAA
CGTGTAGAGTAAAAACTTGTTGTAGTATTTCTTTCTTAGTCCTTGCATTT
TCTCCTGTCTGGTGTGACTCCATTCTTGGATGACCTCCCGCCCATCTTCC
TGGTTCAGGTCCCACTTTTGCTGGAAATTCATCTTGATTCGAGGTCCCAT
CTCGCAGCTTGTGTTTTATGTACTCTATAAACAAGAAAtgaaatgatgaa
ataaatCAACCTTCATAACAAATTACTTGATTTGATCAAAACAACTTGAA
CTAATGATTTACTTCGTTCGTACATCAGCATTTGAACTTTGTACTGTCAA
GATATTGATGTTTACAATCTGGCAGACCGTTACCGAGGATTTTATATAAA
TAATGAGTAATTTCTCTTCCGCGAAAAGTTCCCACATTGCTTTAGTTTGT
ACACTCTTAAAAACCTATTTCCTATGCAAATCTGTTACAGAGGGCCTACG
TCATCCCTTATGAAAGCCACTCATCCCAAAAATCGCTACAAAGTTTGCTA
TCATTGAAAACACTATAATCTTTTTCTACCaccgaaaatatattttgata
tgaTACCACCAAAACCATTTTCCTCCTCTCCTCACATCAAAACATGCGTT
AGTTATTTCAGACGCTACTTATATAATTAAACACAAAAATGAACATTCTC
TCTTCGTCATAATACCACTAAGCAAACTACTGC Run BLAST on NCBI transcript from alignment at sc0000051:647625..651985- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005230 ID=TCONS_00005230|Name=TCONS_00005230|organism=Clytia hemisphaerica|type=transcript|length=4361bp|location=Sequence derived from alignment at sc0000051:647625..651985- (Clytia hemisphaerica)
CTTGTTTGTGTGGTTGAAAGACTGAAAATGAAATTATTTTTGACTGTCTT
AGTGTTGGTCTACACTTTCCAACCCACCGCAATGCAACAGGTAAGGGAAT
TTTTTGACATCATGTTTTGGTTTTATCTTATAATGAAGAAATATTAGCAG
GACAAATTTTGCAAAAAACTGGAGACAAACTGCGAAAGACAATTCAACGT
ATTACTTGTAAAGTCATGTAAAATGTTTTGCTAAAATCTCCTCACTTAAC
CCTTTAGTTTTATCTGAACGACAAGAATCATGGCGCTACTACAATCGTGG
ACGAAAATGGTGAAACAAGAGTAGATTTTAAACTTCACTGCTCTCTCTCC
TCCCTCCCCCAGTGGCAATATTGAAGGGCAGTAATAAGGTCGGAGAGACG
ACTGTTCGCACTCAACATTGCCTTGTTTTCCCGGCATTTTCGAGTGTTTT
TCTCAAACATTTCCATGCGATTGGTCCAAATCTCTCTCTCCTCTAACTAC
CCCTCTCTAACCTTTTTAGGTGTATAAGGATGACAAGAAATCATGGTGCT
ATTATATGACGTTCAATGGTGCATGTCAATGGAATACCCTGGTCCAAACT
AATTGCCCTGGAACCTGCGCAAATAGAGGTACAAGATTGTTTTCTTGCGC
TGAAACTAAAATAGTACTAAACCTATCTGAAGAAGTGGTCAAACTGGGGA
TATCCAGCTTTGCATTGGCGATTTATTTATTTGTATTTCAACAAATATTT
GCTTCTCAAATTCGATCAAGCTTACCTTGGAGGTATTCATATGTTATCCT
TGCGTTTTTAATGGTTTCCACCCCGAAATTCTTTATTGTTTTAAAGTACA
ATGTGCAGGATAGACAAGTGCAAGTTGATATGTTTTTTCATCAACACTGT
TTCACTTGAATTATGACCTTATGTAATCTACAATACGTGTCGGTGGAGAA
AAATCATTGAAAATTTGAACTTTACTGATATTTTGTTGTGTGCTGACACC
AATAGGGTTTGTTCTCGCGCGAGCTCCGCTATAGGAACCATCCCGATAGT
TAACGGGGGCACATAATACGCTTTTTTCGGTAATATAGTATTTGCGTCGA
GCTTGATCTGTTAGGGTCTGATCTTCAGTTCCTCTAAACATTACTGGCTT
TCATTTCTTTCCAGATGTGAAATGTTTCTACATTGAACCAAGGAGAAGGC
GTGATTGCCATGGAAACGACCGCACCTGTGGTATAGGACGATACACAGGT
TGTTGTTGGTCACCTCTAGAGAAACCCGGATCTGGTCCATGGTGTTATCA
TCCTGCAGGTATACATCGCCAGGATATTATAGGGCCCAAGTTTATTGATA
TTAAAAATAAGCTAACAGTATATTCGCGACAGGGTTTATTTATGTTTGCA
TGCTGTCATATTTGTGGCTTTTAGGATAATCTCTTGGAAATGACCTCAAG
GTTGATTTCTCAAAGGGAACCTTTTTGCTAAACATTTCACTAATAATTTC
CAATGCATTGCTATTTTTTAGCTGGCACTGGTCCTAATAAACCAGCTTAC
GGTTGCAGCATTATTCGTGCACTTGACAAGTACGCTCCTTCTGGCTATTA
TTATATCATGAACAACAAGAAGCAAGCCATTCGAACATATTGTCAGATGA
AAGATTATGAAGTCAACTAAATGGATTGCATATCAATAAATTACATGATC
GAAAAAGTAAAACTATTCTTTTCTTTTGGTTTATGTTCTAGAAATTTCCT
TTGATTTTAATCTAGTTTATTTAGATTCTCAAGAAACTTTGCTCCTAGGT
ATAGATTCAGAACGAGACCTTCAATCGCACCAGGTTTAAAGAGATGGACT
ATTTTCTATCTATCTATAAACAGTAAATTTACAAAACGTACCTAATCATT
ACAAAAAATTCTACACTTCGAACTCCTTTTGTTTTGGCAGTTCATTATCT
TTTGATATCGTGTCCTCGTTTTCAATTATCAGTTCGTCATAAGAATTATC
TCCATTATGTAAATTATCTCCACCATATTCTTGGAGTGGAATTACCGTGG
ATGTGTTATTATTTTCTATAACCTCCGTCTTTTTCGGTGGAGCGACACTT
TTCATTTTGAATCGACTACTCGTCGAAGGTTTTGGTTTTGCTTCGGATAT
TAAAGGCTGTCTTGAAGGAGAAGATAAAACGCTTTCACTTTCGTTTATCG
AATCGTTCGGTGAAAAACACCTTTCCGGTGTTTCAATCGAAAACGTCACT
TCTTTTGTTCTTGGTGACTCTAAGTNTACACCTTTCCGGTGTTTCAATCG
AAAACGTTACTTCTTTTGTTTTTGGCGACTCTAAGTTCACTTTCGTTTCA
ATTGGTTCTTTTTGTTTCACGCTTGGTTCTGATTGGTTCTCATCTTGTTT
CTCGGGATCTGATTGGCTCGTTGTCGGTGGTTTAAACAAATCAGCCAATC
GCTTTTCATCTGGCGATGATTGATAACTTTCGATGGAAGAATTCGACTTC
TGTTTATCAAATCGATTAATGGTTTCCGTGACCAGAACTTTCCCCGTCTT
TTTGACGGCTTGAACACGTGAGCTGCCCTTGATATTTTGCAGAACGTCAG
CATAAGGGTGATTTTGCGGATCAAACATATGGTGTTCGTTATCTTGGTCG
GGATGTCGGGACGCAGAGCTCATCGTGCGATGAATGGATGCTTTGCGCTT
CTTCCGACTGTTCTTCTTAAAGATCTTGCCACCGAAGATACCTCCGCTAC
TACTCTCACTCGGTATCAATAAATGATCGATTTTATCGAGTCCTGTATTC
GGCTCAGGTACTACATCGATTTGCGCCGAAACATGGAAGCGGCCCACTGT
GAAATTTCGATTTCGAACAACTTCGAGGTTATTGAAAGTCCAATCATCGA
TTGTTTGAAGTTGAATGTCATCCTCACTCATTCCGTCAAAAGGATCATCC
AATTTATCTTGGACTCCTTGTAGTGCACCGAATACTGCTGCAACGAGTAC
TGCGATGTAGTAAGAACCCCATGCCCCTGCGTTTGATGTTTCTTTCCTTG
ACAGATAGACAAAATAGGGCGATAAGATGATAGGAAGGAACAGAATCAAT
ACTTTGTTGAACGAACGGATGGAGCGAGGAGAGCGATATTCCCTCACTAC
GCGAAGTCTTTCAAAGGATAAACACAGCATATTTAATAAATGAATTACTC
GGGATATGATTGCAGTATTGGAAGGGAGATTGCTCGCTCGCACTCTTTCA
ATCAGCTGGTTTGCATCGCTGAAGTCTTCGTACAAACAACGTGCAATATA
ACGTCTTCGTTCCACTTTGTCTGTCAGTAAATATTCTCTCAAGTTAAACA
TCATATTTTTCACTTTCCCATGCACGGAATCCAACCAATCGTCTTCTAAG
CCCGCTGCAACTTTCCATTCTCGCATGCAGAAAAACCATAGCATTGATGA
TGATTTGAAGTTAGCTAAGTCTTCCAATACCTTTTCTCTCCGTTGAAAGT
CAGTGTTTATTGAGAAAGCGAGCGGGAATACGATAGGTGAAACAAACAGA
CTGACATGGAAATCGAACGAAATGTCAAAATAATCGAAAATATAAACGGA
TAAAGCTGCTAACATCATCTGTAGGATGACCATGAAATTGAAATTAGCAA
TAAAACTTCTGCAAATCGAGATATTGAACGTGTAGAGTAAAAACTTGTTG
TAGTATTTCTTTCTTAGTCCTTGCATTTTCTCCTGTCTGGTGTGACTCCA
TTCTTGGATGACCTCCCGCCCATCTTCCTGGTTCAGGTCCCACTTTTGCT
GGAAATTCATCTTGATTCGAGGTCCCATCTCGCAGCTTGTGTTTTATGTA
CTCTATAAACAAGAAATGAAATGATGAAATAAATCAACCTTCATAACAAA
TTACTTGATTTGATCAAAACAACTTGAACTAATGATTTACTTCGTTCGTA
CATCAGCATTTGAACTTTGTACTGTCAAGATATTGATGTTTACAATCTGG
CAGACCGTTACCGAGGATTTTATATAAATAATGAGTAATTTCTCTTCCGC
GAAAAGTTCCCACATTGCTTTAGTTTGTACACTCTTAAAAACCTATTTCC
TATGCAAATCTGTTACAGAGGGCCTACGTCATCCCTTATGAAAGCCACTC
ATCCCAAAAATCGCTACAAAGTTTGCTATCATTGAAAACACTATAATCTT
TTTCTACCACCGAAAATATATTTTGATATGATACCACCAAAACCATTTTC
CTCCTCTCCTCACATCAAAACATGCGTTAGTTATTTCAGACGCTACTTAT
ATAATTAAACACAAAAATGAACATTCTCTCTTCGTCATAATACCACTAAG
CAAACTACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005230-exon-sc0000051-1575043694:651896..651985 | TCONS_00005230-exon-sc0000051-1575043694:651896..651985 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1575043694:651358..651466 | TCONS_00005230-exon-sc0000051-1575043694:651358..651466 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1575043694:650678..650821 | TCONS_00005230-exon-sc0000051-1575043694:650678..650821 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1575043694:647625..650464 | TCONS_00005230-exon-sc0000051-1575043694:647625..650464 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1510915933:651896..651985 | TCONS_00005230-exon-sc0000051-1510915933:651896..651985 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1510915933:651358..651466 | TCONS_00005230-exon-sc0000051-1510915933:651358..651466 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1510915933:650678..650821 | TCONS_00005230-exon-sc0000051-1510915933:650678..650821 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1510915933:647625..650464 | TCONS_00005230-exon-sc0000051-1510915933:647625..650464 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1491911889:651896..651985 | TCONS_00005230-exon-sc0000051-1491911889:651896..651985 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1491911889:651358..651466 | TCONS_00005230-exon-sc0000051-1491911889:651358..651466 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1491911889:650678..650821 | TCONS_00005230-exon-sc0000051-1491911889:650678..650821 | Clytia hemisphaerica | exon |
| TCONS_00005230-exon-sc0000051-1491911889:647625..650464 | TCONS_00005230-exon-sc0000051-1491911889:647625..650464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:647625..651985 - |
Blast
The following BLAST results are available for this feature:
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