|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005225 ID=TCONS_00005225|Name=TCONS_00005225|organism=Clytia hemisphaerica|type=transcript|length=3429bp
AAAGTTTTGTAGCATTTTAATCTGAAAGATTCAAGCTCGGATTTAAGATG
AATGTATCATTAACAAAACTCAAGATAAATCATAAAGACAAAACCGAGCT
GCAAGATAAAATCACCACAAACGTTGAGTATCAGGAGGACGAtaaggaac
attttaagaagaCTGTTTATGAATATCTTTCCACAAGGTTTAAAGACGTG
AAAGAGGAAGTcagtgaagaagaagaaacgGAAGAAGCCGGAAATGAAGA
AATCGAATTTCGTGAAGAGGAAAATATTAACGATGATGACATTAGATTTG
AAGAAGGAGACACACGGCAGcctaaaaaatcaaacttgcaAGTCGCATCT
GGCAGAGTATTAGAGTTTGATACACTGGAGAATGTTCGAAGTATGGGAAC
AGGGGATGAAAATGTTTATTACTGTTTCAACGTGAAAGTTATGTCAACAA
CTCCTTCCGTCGGTGACACTAAAGATAAGACTTTTGGAGAAATGGCTTTC
GTCTTTTGGCGATCTGctgacgatgacgtcatcatttatgttTTCTTGCA
GAATCGAAAGTCGTACACGTGGACAGTGTTGACAGGACATAGAGATTGTG
AATTCCCAATGAAGTTTGCCAGAACTTTTCTTGACCCAAACTCTATTGAC
AACATTTCTATGAACAGTTTAGTTGGAGCAGAAACAGGcaagcagagatt
ttcattcAACAAAAACAATCCTTTCCAACCCTCTTTTGTCATGGACAGAT
TCGCCGTTGTCGAAGGATTTAAGGCCAGCCTTGGTAGTACTAAAAACTGC
CAGGAACTTGCCAACAAACTACAAAAAGCAaccaaagatttgaaaacaac
GAAAGCTATCATTCAAACCGGTCAAGTTAAGTTTGCATTAGATCTAGAGG
GTAGGAGTTTGGATCCAGAAAGATATATAGACTTTCTAGCATTCATCCAT
GGAACCATGGAACAAGAAGCCGGAAGAATTGCCAACGATCTTCAATGGAG
GTTCCTGGATTTCATTGAAAAAGCTCCGCTGAATGATTGCAAGAAGGCGA
ACAAACTTTTTCATAAGCAACTTCAAAGCTTCTTCCAAAAGAGCGCTCAA
CCAGAAAATATCGATTTAACAGGAATCCTTTCCACGCCTCGTCAAAATAC
ATACGAGTCAGTAAATATTTATTTGTATTATGAtaataaaaaaatcgaat
ggGCGGAGGGCGGAGATTTACGGGGCGATGAAGTCACTTTGGAGAAAATT
CGTGAAGCTCTCTCACAAGCTGATGTCGAGTCGACCGACCCCGATAAGGT
TGTTTTGAAGTTTAACGCTGGAAGTCGGATGGAAGAAAAACTGATCAACA
TGATCAACGGAGTCAGCATTTTCGAGGGACCGGTTGACGGTGAAAATAAA
CAACGTAAATTGATTCGATGTGGAGGTCTTTCTTTTCTCATCCATATCGA
TAAATATTATCAAGAGCTGTACCTTTTCATCAATGCCGTCCGAAAGACGC
TCGTTCAAAAAGAATCGCTACCGGAAATTCTGCCATGGAGTTTACCGCAG
CACAAGAATAGCTTCACCATGAAGCAATTGTACGAGTTTTGCACCACGAT
CAAAGGAAGCGACGAAGACCTTAAAGAACTTCAAGATATTTTATGTGAAG
ATGTTCAACTTTTTGTGAATGGTCAGAACAATCTACTAAGAACACTTGAA
GACAAGAATCATGCCGTCTGGTTGATTAGTTTAAATCAGTCGCCCATCAT
CGGATCAAAAATATGCGAAGAAATCGCNCAAGAATCATGCCGTCTGGTTG
ATTAGTTTAAATCAGTCGCCCATCATCGGATCAAAAATATTCGAAGAAAT
CGCCAAAGCTATTAAGAAAACTGAAAAGAAAGCCAAATCGGAGattgaaa
agattttcagtAAACCAACAGTCGATGCAAAGGATGAAGATCTTGTCAAA
GTTTTGAACGAAAAAGAGAAGAACATCGAATTAGTCAAAGGAGAGACCGA
TCGATTTCGCGTGAAACTTCAACATCTTACCAAAGAtagctgggaagcaa
tcagtagaagttACCCACAAATTTGTCCAGTGCGTTTGATCCAATTCTTA
AGAACATTTGCTGATGTGAAAGGTGAGGGCGATTACAATGAACTATATCA
TCTGTCAAATTGTCATTGTCAGAAGAGTGATTGGAAATATGTTGTCGGTG
ATCGCATTTTGGCGGATGCAAATCACAACATTGAGTTGTTTGACGTGATG
GCGATCAAAGAGAACGAGGCGTTCCTTCTGCATGTCAAGAAGAATTTTGA
TGCATCAGCTGTCCGCGCTTTAGCCAGTCAAGTTAGAGTCAGTCTTGAAT
GTTTTTGGAATGCTTCTTTCGATAACTCCACCAGCCAGAATATGTTAGAG
AAATTCTACGACGTCGCGCGGCCGGATAAAGAAGACGAGGAGTTATCTAT
CCACAGACGTCTGACCAAATGGGAGATGGGAGAGATTGGATCAACGAAGA
AGGAGTTCCTTAAGAAAACCATTCACCAGAAGATGAACATTAAAATCTGT
CTTGTTCCATGCATGGAGAAAATTGGGAACCATTTCCACGAGATTGCGAA
ATGTGACTTGAACCGAACCTTCGAACGACAAGATTTCGCACAGAAAGGCA
ACCACGTGAACAGGCAACGAATGGAGAATCCTTTTCACGCTTTGAAGAAA
CTCAACATTCTTCATCCGAACGGTAAAATCTCCCCATCGTTTTTTAACTT
CGACAAGAATCAATTCACAAAAGCACTCTTTAACGAAATCCCCAACAAAA
CACAATGTAAAGACACCTTTGATGAAATCGGAAAGCTTTTGATCAAATCG
CCTAAGAATCCGCTTTTCGACCCCGCATCGTTCGTTTCCAAAGCTGAATT
CGTCAGTCTCTACaactatcacttcaaatgtcATGTTTCTCCAGGTTTCA
AACCGCTCAAACTCGGTGTCATCCCGATCAACGAAGTTTGTCAGATCCTC
AACCCCAATCACACCGACAAGGAGAATGTGACACCCGCAACCACCGCTAA
ACCTAAGAAACGCAAAAGCGACGAGAATCAAAACCAAGCCACACCACGGA
AAAaatcaccccccccccccccccaaaccccaaaaaaaaaaaaagggccG
AAAATCAAAACTAAGCTACCCCTGGgaaaaaatccccccccccccccttg
tcaATTCAACTCCACAGAGAACACCAAAATCCTCAAACGGGAAAAAGCTG
AAGCAAACGACGATTAATTTTACATCTAAAACGCCAAAAAACAATACTCC
GAATTAACTCTGAATACAGATTTTTTAACTTGAATGATAGAGCGTCAAAA
ATATCATTAGAAAGATCTCAAtaaacatttttatattttaaattcttttt
aattttaattttaatttctaatttttgaa Run BLAST on NCBI protein sequence of TCONS_00005225-protein >TCONS_00005225-protein ID=TCONS_00005225-protein|Name=TCONS_00005225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
MNVSLTKLKINHKDKTELQDKITTNVEYQEDDKEHFKKTVYEYLSTRFKD
VKEEVSEEEETEEAGNEEIEFREEENINDDDIRFEEGDTRQPKKSNLQVA
SGRVLEFDTLENVRSMGTGDENVYYCFNVKVMSTTPSVGDTKDKTFGEMA
FVFWRSADDDVIIYVFLQNRKSYTWTVLTGHRDCEFPMKFARTFLDPNSI
DNISMNSLVGAETGKQRFSFNKNNPFQPSFVMDRFAVVEGFKASLGSTKN
CQELANKLQKATKDLKTTKAIIQTGQVKFALDLEGRSLDPERYIDFLAFI
HGTMEQEAGRIANDLQWRFLDFIEKAPLNDCKKANKLFHKQLQSFFQKSA
QPENIDLTGILSTPRQNTYESVNIYLYYDNKKIEWAEGGDLRGDEVTLEK
IREALSQADVESTDPDKVVLKFNAGSRMEEKLINMINGVSIFEGPVDGEN
KQRKLIRCGGLSFLIHIDKYYQELYLFINAVRKTLVQKESLPEILPWSLP
QHKNSFTMKQLYEFCTTIKGSDEDLKELQDILCEDVQLFVNGQNNLLRTL
EDKNHAVWLISLNQSPIIGSKICEEIXQESCRLVD Run BLAST on NCBI transcript from alignment at sc0000051:572632..576060- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005225 ID=TCONS_00005225|Name=TCONS_00005225|organism=Clytia hemisphaerica|type=transcript|length=3429bp|location=Sequence derived from alignment at sc0000051:572632..576060- (Clytia hemisphaerica)
AAAGTTTTGTAGCATTTTAATCTGAAAGATTCAAGCTCGGATTTAAGATG
AATGTATCATTAACAAAACTCAAGATAAATCATAAAGACAAAACCGAGCT
GCAAGATAAAATCACCACAAACGTTGAGTATCAGGAGGACGATAAGGAAC
ATTTTAAGAAGACTGTTTATGAATATCTTTCCACAAGGTTTAAAGACGTG
AAAGAGGAAGTCAGTGAAGAAGAAGAAACGGAAGAAGCCGGAAATGAAGA
AATCGAATTTCGTGAAGAGGAAAATATTAACGATGATGACATTAGATTTG
AAGAAGGAGACACACGGCAGCCTAAAAAATCAAACTTGCAAGTCGCATCT
GGCAGAGTATTAGAGTTTGATACACTGGAGAATGTTCGAAGTATGGGAAC
AGGGGATGAAAATGTTTATTACTGTTTCAACGTGAAAGTTATGTCAACAA
CTCCTTCCGTCGGTGACACTAAAGATAAGACTTTTGGAGAAATGGCTTTC
GTCTTTTGGCGATCTGCTGACGATGACGTCATCATTTATGTTTTCTTGCA
GAATCGAAAGTCGTACACGTGGACAGTGTTGACAGGACATAGAGATTGTG
AATTCCCAATGAAGTTTGCCAGAACTTTTCTTGACCCAAACTCTATTGAC
AACATTTCTATGAACAGTTTAGTTGGAGCAGAAACAGGCAAGCAGAGATT
TTCATTCAACAAAAACAATCCTTTCCAACCCTCTTTTGTCATGGACAGAT
TCGCCGTTGTCGAAGGATTTAAGGCCAGCCTTGGTAGTACTAAAAACTGC
CAGGAACTTGCCAACAAACTACAAAAAGCAACCAAAGATTTGAAAACAAC
GAAAGCTATCATTCAAACCGGTCAAGTTAAGTTTGCATTAGATCTAGAGG
GTAGGAGTTTGGATCCAGAAAGATATATAGACTTTCTAGCATTCATCCAT
GGAACCATGGAACAAGAAGCCGGAAGAATTGCCAACGATCTTCAATGGAG
GTTCCTGGATTTCATTGAAAAAGCTCCGCTGAATGATTGCAAGAAGGCGA
ACAAACTTTTTCATAAGCAACTTCAAAGCTTCTTCCAAAAGAGCGCTCAA
CCAGAAAATATCGATTTAACAGGAATCCTTTCCACGCCTCGTCAAAATAC
ATACGAGTCAGTAAATATTTATTTGTATTATGATAATAAAAAAATCGAAT
GGGCGGAGGGCGGAGATTTACGGGGCGATGAAGTCACTTTGGAGAAAATT
CGTGAAGCTCTCTCACAAGCTGATGTCGAGTCGACCGACCCCGATAAGGT
TGTTTTGAAGTTTAACGCTGGAAGTCGGATGGAAGAAAAACTGATCAACA
TGATCAACGGAGTCAGCATTTTCGAGGGACCGGTTGACGGTGAAAATAAA
CAACGTAAATTGATTCGATGTGGAGGTCTTTCTTTTCTCATCCATATCGA
TAAATATTATCAAGAGCTGTACCTTTTCATCAATGCCGTCCGAAAGACGC
TCGTTCAAAAAGAATCGCTACCGGAAATTCTGCCATGGAGTTTACCGCAG
CACAAGAATAGCTTCACCATGAAGCAATTGTACGAGTTTTGCACCACGAT
CAAAGGAAGCGACGAAGACCTTAAAGAACTTCAAGATATTTTATGTGAAG
ATGTTCAACTTTTTGTGAATGGTCAGAACAATCTACTAAGAACACTTGAA
GACAAGAATCATGCCGTCTGGTTGATTAGTTTAAATCAGTCGCCCATCAT
CGGATCAAAAATATGCGAAGAAATCGCNCAAGAATCATGCCGTCTGGTTG
ATTAGTTTAAATCAGTCGCCCATCATCGGATCAAAAATATTCGAAGAAAT
CGCCAAAGCTATTAAGAAAACTGAAAAGAAAGCCAAATCGGAGATTGAAA
AGATTTTCAGTAAACCAACAGTCGATGCAAAGGATGAAGATCTTGTCAAA
GTTTTGAACGAAAAAGAGAAGAACATCGAATTAGTCAAAGGAGAGACCGA
TCGATTTCGCGTGAAACTTCAACATCTTACCAAAGATAGCTGGGAAGCAA
TCAGTAGAAGTTACCCACAAATTTGTCCAGTGCGTTTGATCCAATTCTTA
AGAACATTTGCTGATGTGAAAGGTGAGGGCGATTACAATGAACTATATCA
TCTGTCAAATTGTCATTGTCAGAAGAGTGATTGGAAATATGTTGTCGGTG
ATCGCATTTTGGCGGATGCAAATCACAACATTGAGTTGTTTGACGTGATG
GCGATCAAAGAGAACGAGGCGTTCCTTCTGCATGTCAAGAAGAATTTTGA
TGCATCAGCTGTCCGCGCTTTAGCCAGTCAAGTTAGAGTCAGTCTTGAAT
GTTTTTGGAATGCTTCTTTCGATAACTCCACCAGCCAGAATATGTTAGAG
AAATTCTACGACGTCGCGCGGCCGGATAAAGAAGACGAGGAGTTATCTAT
CCACAGACGTCTGACCAAATGGGAGATGGGAGAGATTGGATCAACGAAGA
AGGAGTTCCTTAAGAAAACCATTCACCAGAAGATGAACATTAAAATCTGT
CTTGTTCCATGCATGGAGAAAATTGGGAACCATTTCCACGAGATTGCGAA
ATGTGACTTGAACCGAACCTTCGAACGACAAGATTTCGCACAGAAAGGCA
ACCACGTGAACAGGCAACGAATGGAGAATCCTTTTCACGCTTTGAAGAAA
CTCAACATTCTTCATCCGAACGGTAAAATCTCCCCATCGTTTTTTAACTT
CGACAAGAATCAATTCACAAAAGCACTCTTTAACGAAATCCCCAACAAAA
CACAATGTAAAGACACCTTTGATGAAATCGGAAAGCTTTTGATCAAATCG
CCTAAGAATCCGCTTTTCGACCCCGCATCGTTCGTTTCCAAAGCTGAATT
CGTCAGTCTCTACAACTATCACTTCAAATGTCATGTTTCTCCAGGTTTCA
AACCGCTCAAACTCGGTGTCATCCCGATCAACGAAGTTTGTCAGATCCTC
AACCCCAATCACACCGACAAGGAGAATGTGACACCCGCAACCACCGCTAA
ACCTAAGAAACGCAAAAGCGACGAGAATCAAAACCAAGCCACACCACGGA
AAAAATCACCCCCCCCCCCCCCCCAAACCCCAAAAAAAAAAAAAGGGCCG
AAAATCAAAACTAAGCTACCCCTGGGAAAAAATCCCCCCCCCCCCCCTTG
TCAATTCAACTCCACAGAGAACACCAAAATCCTCAAACGGGAAAAAGCTG
AAGCAAACGACGATTAATTTTACATCTAAAACGCCAAAAAACAATACTCC
GAATTAACTCTGAATACAGATTTTTTAACTTGAATGATAGAGCGTCAAAA
ATATCATTAGAAAGATCTCAATAAACATTTTTATATTTTAAATTCTTTTT
AATTTTAATTTTAATTTCTAATTTTTGAA Coding sequence (CDS) from alignment at sc0000051:572632..576060- >TCONS_00005225 ID=TCONS_00005225|Name=TCONS_00005225|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at sc0000051:572632..576060- (Clytia hemisphaerica)
ATGAATGTATCATTAACAAAACTCAAGATAAATCATAAAGACAAAACCGA
GCTGCAAGATAAAATCACCACAAACGTTGAGTATCAGGAGGACGATAAGG
AACATTTTAAGAAGACTGTTTATGAATATCTTTCCACAAGGTTTAAAGAC
GTGAAAGAGGAAGTCAGTGAAGAAGAAGAAACGGAAGAAGCCGGAAATGA
AGAAATCGAATTTCGTGAAGAGGAAAATATTAACGATGATGACATTAGAT
TTGAAGAAGGAGACACACGGCAGCCTAAAAAATCAAACTTGCAAGTCGCA
TCTGGCAGAGTATTAGAGTTTGATACACTGGAGAATGTTCGAAGTATGGG
AACAGGGGATGAAAATGTTTATTACTGTTTCAACGTGAAAGTTATGTCAA
CAACTCCTTCCGTCGGTGACACTAAAGATAAGACTTTTGGAGAAATGGCT
TTCGTCTTTTGGCGATCTGCTGACGATGACGTCATCATTTATGTTTTCTT
GCAGAATCGAAAGTCGTACACGTGGACAGTGTTGACAGGACATAGAGATT
GTGAATTCCCAATGAAGTTTGCCAGAACTTTTCTTGACCCAAACTCTATT
GACAACATTTCTATGAACAGTTTAGTTGGAGCAGAAACAGGCAAGCAGAG
ATTTTCATTCAACAAAAACAATCCTTTCCAACCCTCTTTTGTCATGGACA
GATTCGCCGTTGTCGAAGGATTTAAGGCCAGCCTTGGTAGTACTAAAAAC
TGCCAGGAACTTGCCAACAAACTACAAAAAGCAACCAAAGATTTGAAAAC
AACGAAAGCTATCATTCAAACCGGTCAAGTTAAGTTTGCATTAGATCTAG
AGGGTAGGAGTTTGGATCCAGAAAGATATATAGACTTTCTAGCATTCATC
CATGGAACCATGGAACAAGAAGCCGGAAGAATTGCCAACGATCTTCAATG
GAGGTTCCTGGATTTCATTGAAAAAGCTCCGCTGAATGATTGCAAGAAGG
CGAACAAACTTTTTCATAAGCAACTTCAAAGCTTCTTCCAAAAGAGCGCT
CAACCAGAAAATATCGATTTAACAGGAATCCTTTCCACGCCTCGTCAAAA
TACATACGAGTCAGTAAATATTTATTTGTATTATGATAATAAAAAAATCG
AATGGGCGGAGGGCGGAGATTTACGGGGCGATGAAGTCACTTTGGAGAAA
ATTCGTGAAGCTCTCTCACAAGCTGATGTCGAGTCGACCGACCCCGATAA
GGTTGTTTTGAAGTTTAACGCTGGAAGTCGGATGGAAGAAAAACTGATCA
ACATGATCAACGGAGTCAGCATTTTCGAGGGACCGGTTGACGGTGAAAAT
AAACAACGTAAATTGATTCGATGTGGAGGTCTTTCTTTTCTCATCCATAT
CGATAAATATTATCAAGAGCTGTACCTTTTCATCAATGCCGTCCGAAAGA
CGCTCGTTCAAAAAGAATCGCTACCGGAAATTCTGCCATGGAGTTTACCG
CAGCACAAGAATAGCTTCACCATGAAGCAATTGTACGAGTTTTGCACCAC
GATCAAAGGAAGCGACGAAGACCTTAAAGAACTTCAAGATATTTTATGTG
AAGATGTTCAACTTTTTGTGAATGGTCAGAACAATCTACTAAGAACACTT
GAAGACAAGAATCATGCCGTCTGGTTGATTAGTTTAAATCAGTCGCCCAT
CATCGGATCAAAAATATGCGAAGAAATCGCNCAAGAATCATGCCGTCTGG
TTGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005225-exon-sc0000051-1575043694:572632..576060 | TCONS_00005225-exon-sc0000051-1575043694:572632..576060 | Clytia hemisphaerica | exon |
| TCONS_00005225-exon-sc0000051-1510915933:572632..576060 | TCONS_00005225-exon-sc0000051-1510915933:572632..576060 | Clytia hemisphaerica | exon |
| TCONS_00005225-exon-sc0000051-1491911889:572632..576060 | TCONS_00005225-exon-sc0000051-1491911889:572632..576060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:572632..576060 - |
Blast
The following BLAST results are available for this feature:
|
