|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005223 ID=TCONS_00005223|Name=TCONS_00005223|organism=Clytia hemisphaerica|type=transcript|length=1037bp
CAGGTTGCAGAACACAATGTGAAGGAACGAATGTTCACGAAAGATCGTGC
ATCCAGAAATGCATTCAATGTATACATTGCCAATCTGCAATTGTTCAACC
TTACTTGGTGTATCCACAAATTCCACAATATCAAATGAtccaacaacagc
aacaacaacaacaacaacaacaacaacaccaatatcaacaacaacaattt
tGCCAGGGTTGTCCAAACAGCATGTCACCACAAACACAACCAAAGACAAC
ACCATTTTCATCCAACCAAATTAATCTCCAACAACAAGGTCAACCTGCTT
TCATGATGAATGCACAACAATTTCTTGATCAACCGAATGGTGCCATTCTT
CCACAAGGCGGCGCTTTCCCGCCAAACACAGTACAAACGCAACCCCTGAT
CATGCCAACAAAGTCGATGTCTCAATCATTATGCGTGAACAGTCCGCCAA
CACCTTCCGCCATCAATTCGGATCTCAACATTGACACTTCGAAAATGATT
ACAGAGTTAGAAAAGAAACAACACCAGCGAAAAGAGAAATTGCGCGCGAA
GAACAAATTGAGAGAACGGAAAAAGAAACTGATGGATGAAAAGAAAAGTA
GAAAGaacaaacagaaaaaaaagaacaCCCCTAACAACAGATGGAAAAGT
AGAATGAATAATTCCAAAACGAAACTGAGTGAgagattgaaaatgaaagg
aAAAAAACTTCCCAAGCAAGAAACATTGAGACAGCAAAAAGGAAAACAAT
TCGGAGATAAGAATACCGAGTGGAACGCAAAGCATAAGAAAACGAAGAAA
GTTTGGAATCAGAGGGTTGAGAAAACTaagaaaaagattaaaaaacatga
aaaatcgaAAAGTAACAAAGTggcaaaaacaccaaatttaTTTCCCCTAA
AAAGACCTTCAACAAATGCTGGTGCATCAGCTTCTCAGATATTGGGTAAT
TGTCCGTGTAACCCATACCTAACTGCTACTCAAACATTTGGGAGTTGTCC
GTGTAGCTCATATCCAGCTCCTCAAATCCAGGGAGCT Run BLAST on NCBI protein sequence of TCONS_00005223-protein >TCONS_00005223-protein ID=TCONS_00005223-protein|Name=TCONS_00005223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
GCRTQCEGTNVHERSCIQKCIQCIHCQSAIVQPYLVYPQIPQYQMIQQQQ
QQQQQQQQHQYQQQQFCQGCPNSMSPQTQPKTTPFSSNQINLQQQGQPAF
MMNAQQFLDQPNGAILPQGGAFPPNTVQTQPLIMPTKSMSQSLCVNSPPT
PSAINSDLNIDTSKMITELEKKQHQRKEKLRAKNKLRERKKKLMDEKKSR
KNKQKKKNTPNNRWKSRMNNSKTKLSERLKMKGKKLPKQETLRQQKGKQF
GDKNTEWNAKHKKTKKVWNQRVEKTKKKIKKHEKSKSNKVAKTPNLFPLK
RPSTNAGASASQILGNCPCNPYLTATQTFGSCPCSSYPAPQIQGA Run BLAST on NCBI transcript from alignment at sc0000051:560027..561350- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005223 ID=TCONS_00005223|Name=TCONS_00005223|organism=Clytia hemisphaerica|type=transcript|length=1324bp|location=Sequence derived from alignment at sc0000051:560027..561350- (Clytia hemisphaerica)
CAGGTTGCAGAACACAATGTGAAGGAACGAATGTTCACGAAAGATCGTGC
ATCCAGAAATGCATTCAATGTATACATTGCCAATCTGCAATTGGTAAGCA
AAAATAGTACAATTTTCCTCAAGAAGTTTGATTTTATCTCTATTGCATAT
TGGTTGCCAAAAACAACTTCTCACAATCCTTTTTTCAGCCATGACATCCC
TTACTCTACTCCAGAGATGCTCTCATGTCTGTTAATCGGCAATAAATTTC
ACAGGATAACCAGGTCTGAACAGGCTAGACTTCCCACTGGATAATAAAAC
AATTACAGAGCTGTTTACACTATGAAACTTCTCTATTCTTCTTACTTTTT
CATACCATAATATTTTTCATACATTTTCAGTTCAACCTTACTTGGTGTAT
CCACAAATTCCACAATATCAAATGATCCAACAACAGCAACAACAACAACA
ACAACAACAACAACACCAATATCAACAACAACAATTTTGCCAGGGTTGTC
CAAACAGCATGTCACCACAAACACAACCAAAGACAACACCATTTTCATCC
AACCAAATTAATCTCCAACAACAAGGTCAACCTGCTTTCATGATGAATGC
ACAACAATTTCTTGATCAACCGAATGGTGCCATTCTTCCACAAGGCGGCG
CTTTCCCGCCAAACACAGTACAAACGCAACCCCTGATCATGCCAACAAAG
TCGATGTCTCAATCATTATGCGTGAACAGTCCGCCAACACCTTCCGCCAT
CAATTCGGATCTCAACATTGACACTTCGAAAATGATTACAGAGTTAGAAA
AGAAACAACACCAGCGAAAAGAGAAATTGCGCGCGAAGAACAAATTGAGA
GAACGGAAAAAGAAACTGATGGATGAAAAGAAAAGTAGAAAGAACAAACA
GAAAAAAAAGAACACCCCTAACAACAGATGGAAAAGTAGAATGAATAATT
CCAAAACGAAACTGAGTGAGAGATTGAAAATGAAAGGAAAAAAACTTCCC
AAGCAAGAAACATTGAGACAGCAAAAAGGAAAACAATTCGGAGATAAGAA
TACCGAGTGGAACGCAAAGCATAAGAAAACGAAGAAAGTTTGGAATCAGA
GGGTTGAGAAAACTAAGAAAAAGATTAAAAAACATGAAAAATCGAAAAGT
AACAAAGTGGCAAAAACACCAAATTTATTTCCCCTAAAAAGACCTTCAAC
AAATGCTGGTGCATCAGCTTCTCAGATATTGGGTAATTGTCCGTGTAACC
CATACCTAACTGCTACTCAAACATTTGGGAGTTGTCCGTGTAGCTCATAT
CCAGCTCCTCAAATCCAGGGAGCT Coding sequence (CDS) from alignment at sc0000051:560027..561350- >TCONS_00005223 ID=TCONS_00005223|Name=TCONS_00005223|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at sc0000051:560027..561350- (Clytia hemisphaerica)
TTCAACCTTACTTGGTGTATCCACAAATTCCACAATATCAAATGATCCAA
CAACAGCAACAACAACAACAACAACAACAACAACACCAATATCAACAACA
ACAATTTTGCCAGGGTTGTCCAAACAGCATGTCACCACAAACACAACCAA
AGACAACACCATTTTCATCCAACCAAATTAATCTCCAACAACAAGGTCAA
CCTGCTTTCATGATGAATGCACAACAATTTCTTGATCAACCGAATGGTGC
CATTCTTCCACAAGGCGGCGCTTTCCCGCCAAACACAGTACAAACGCAAC
CCCTGATCATGCCAACAAAGTCGATGTCTCAATCATTATGCGTGAACAGT
CCGCCAACACCTTCCGCCATCAATTCGGATCTCAACATTGACACTTCGAA
AATGATTACAGAGTTAGAAAAGAAACAACACCAGCGAAAAGAGAAATTGC
GCGCGAAGAACAAATTGAGAGAACGGAAAAAGAAACTGATGGATGAAAAG
AAAAGTAGAAAGAACAAACAGAAAAAAAAGAACACCCCTAACAACAGATG
GAAAAGTAGAATGAATAATTCCAAAACGAAACTGAGTGAGAGATTGAAAA
TGAAAGGAAAAAAACTTCCCAAGCAAGAAACATTGAGACAGCAAAAAGGA
AAACAATTCGGAGATAAGAATACCGAGTGGAACGCAAAGCATAAGAAAAC
GAAGAAAGTTTGGAATCAGAGGGTTGAGAAAACTAAGAAAAAGATTAAAA
AACATGAAAAATCGAAAAGTAACAAAGTGGCAAAAACACCAAATTTATTT
CCCCTAAAAAGACCTTCAACAAATGCTGGTGCATCAGCTTCTCAGATATT
GGGTAATTGTCCGTGTAACCCATACCTAACTGCTACTCAAACATTTGGGA
GTTGTCCGTGTAGCTCATATCCAGCTCCTCAAATCCAGGGAGCTGGTTGC
AGAACACAATGTGAAGGAACGAATGTTCACGAAAGATCGTGCATCCAGAA
ATGCATTCAATGTATACATTGCCAATCTGCAATTGTTCAACCTTACTTGG
TGTATCCACAAATTCCACAATATCAAATGATCCAACAACAGCAACAACAA
CAACAACAACAACAACAACACCAATATCAACAACAACAATTTTGCCAGGG
TTGTCCAAACAGCATGTCACCACAAACACAACCAAAGACAACACCATTTT
CATCCAACCAAATTAATCTCCAACAACAAGGTCAACCTGCTTTCATGATG
AATGCACAACAATTTCTTGATCAACCGAATGGTGCCATTCTTCCACAAGG
CGGCGCTTTCCCGCCAAACACAGTACAAACGCAACCCCTGATCATGCCAA
CAAAGTCGATGTCTCAATCATTATGCGTGAACAGTCCGCCAACACCTTCC
GCCATCAATTCGGATCTCAACATTGACACTTCGAAAATGATTACAGAGTT
AGAAAAGAAACAACACCAGCGAAAAGAGAAATTGCGCGCGAAGAACAAAT
TGAGAGAACGGAAAAAGAAACTGATGGATGAAAAGAAAAGTAGAAAGAAC
AAACAGAAAAAAAAGAACACCCCTAACAACAGATGGAAAAGTAGAATGAA
TAATTCCAAAACGAAACTGAGTGAGAGATTGAAAATGAAAGGAAAAAAAC
TTCCCAAGCAAGAAACATTGAGACAGCAAAAAGGAAAACAATTCGGAGAT
AAGAATACCGAGTGGAACGCAAAGCATAAGAAAACGAAGAAAGTTTGGAA
TCAGAGGGTTGAGAAAACTAAGAAAAAGATTAAAAAACATGAAAAATCGA
AAAGTAACAAAGTGGCAAAAACACCAAATTTATTTCCCCTAAAAAGACCT
TCAACAAATGCTGGTGCATCAGCTTCTCAGATATTGGGTAATTGTCCGTG
TAACCCATACCTAACTGCTACTCAAACATTTGGGAGTTGTCCGTGTAGCT
CATATCCAGCTCCTCAAATCCAGGGAGCTGGTTGCAGAACACAATGTGAA
GGAACGAATGTTCACGAAAGATCGTGCATCCAGAAATGCATTCAATGTAT
ACATTGCCAATCTGCAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005223-exon-sc0000051-1575043694:561258..561350 | TCONS_00005223-exon-sc0000051-1575043694:561258..561350 | Clytia hemisphaerica | exon |
| TCONS_00005223-exon-sc0000051-1575043694:560027..560970 | TCONS_00005223-exon-sc0000051-1575043694:560027..560970 | Clytia hemisphaerica | exon |
| TCONS_00005223-exon-sc0000051-1510915933:561258..561350 | TCONS_00005223-exon-sc0000051-1510915933:561258..561350 | Clytia hemisphaerica | exon |
| TCONS_00005223-exon-sc0000051-1510915933:560027..560970 | TCONS_00005223-exon-sc0000051-1510915933:560027..560970 | Clytia hemisphaerica | exon |
| TCONS_00005223-exon-sc0000051-1491911889:561258..561350 | TCONS_00005223-exon-sc0000051-1491911889:561258..561350 | Clytia hemisphaerica | exon |
| TCONS_00005223-exon-sc0000051-1491911889:560027..560970 | TCONS_00005223-exon-sc0000051-1491911889:560027..560970 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:560027..561350 - |
Blast
The following BLAST results are available for this feature:
|
