TCONS_00005215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005215
Unique NameTCONS_00005215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005215 ID=TCONS_00005215|Name=TCONS_00005215|organism=Clytia hemisphaerica|type=transcript|length=364bp
CAGAGATGTGTGGAGAAAGCGTTTCTTATCGAGCAACTGGATTCAAAGAT
AATGAAGTTGGTAGTGAGGCATTGGTTGTAACGGGCAGTTATGATATAAC
AGCACCAGTTTTCATTCAAGCCCATCCATGTCCAGTTTTGACATGGGATG
CAGAAGACCATGGATTATGCGAAGTGGATTTGTTTCTGTCTTTTCCACAA
AATGATAACACCTTCAGAAATCTCACCACAAATGCGAGTGCTGGAAGTTT
TCGAGATTGCTGTTTTACCGCGTATGCAACAAGTGTCGAATATAAAACAA
TGATTTATCTAAAGACAAAGGATGGAAATAGATTTGAAATAAGTGACATC
AATAGACCGTTGAC
Run BLAST on NCBI

protein sequence of TCONS_00005215-protein

>TCONS_00005215-protein ID=TCONS_00005215-protein|Name=TCONS_00005215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
EMCGESVSYRATGFKDNEVGSEALVVTGSYDITAPVFIQAHPCPVLTWDA
EDHGLCEVDLFLSFPQNDNTFRNLTTNASAGSFRDCCFTAYATSVEYKTM
IYLKTKDGNRFEISDINRPL
Run BLAST on NCBI

transcript from alignment at sc0000051:464801..465334-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005215 ID=TCONS_00005215|Name=TCONS_00005215|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at sc0000051:464801..465334- (Clytia hemisphaerica)
CAGAGATGTGTGGAGAAAGCGTTTCTTATCGAGCAACTGGATTCAAAGAT
AATGAAGTTGGTAGTGAGGCATTGGTTGTAACGGGCAGTTGTAAGTATTA
TGAATCAAATTTCTTTGACATTTTTTTGCTTCATCTATGAATATTTTTTT
CTGAACTAAAAGCTGAAAATTAAAATTTTAAGGAAACAAGCAACCGAGTA
GATTGCTAATTAATACCAGCGACGATATAAGTTGGTTTGTATTCCTTTCA
TTCCAATTAGATGATATAACAGCACCAGTTTTCATTCAAGCCCATCCATG
TCCAGTTTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATT
TGTTTCTGTCTTTTCCACAAAATGATAACACCTTCAGAAATCTCACCACA
AATGCGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACCGCGTATGCAAC
AAGTGTCGAATATAAAACAATGATTTATCTAAAGACAAAGGATGGAAATA
GATTTGAAATAAGTGACATCAATAGACCGTTGAC

Coding sequence (CDS) from alignment at sc0000051:464801..465334-

>TCONS_00005215 ID=TCONS_00005215|Name=TCONS_00005215|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000051:464801..465334- (Clytia hemisphaerica)
ATGATATAACAGCACCAGTTTTCATTCAAGCCCATCCATGTCCAGTTTTG
ACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGTTTCTGTC
TTTTCCACAAAATGATAACACCTTCAGAAATCTCACCACAAATGCGAGTG
CTGGAAGTTTTCGAGATTGCTGTTTTACCGCGTATGCAACAAGTGTCGAA
TATAAAACAATGATTTATCTAAAGACAAAGGATGGAAATAGATTTGAAAT
AAGTGACATCAATAGACCGTTGGAGATGTGTGGAGAAAGCGTTTCTTATC
GAGCAACTGGATTCAAAGATAATGAAGTTGGTAGTGAGGCATTGGTTGTA
ACGGGCAGTTATGATATAACAGCACCAGTTTTCATTCAAGCCCATCCATG
TCCAGTTTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATT
TGTTTCTGTCTTTTCCACAAAATGATAACACCTTCAGAAATCTCACCACA
AATGCGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACCGCGTATGCAAC
AAGTGTCGAATATAAAACAATGATTTATCTAAAGACAAAGGATGGAAATA
GATTTGAAATAAGTGACATCAATAGACCGTTGGAGATGTGTGGAGAAAGC
GTTTCTTATCGAGCAACTGGATTCAAAGATAATGAAGTTGGTAGTGAGGC
ATTGGTTGTAACGGGCAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002964XLOC_002964Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005215-proteinTCONS_00005215-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005215-exon-sc0000051-1575043694:465245..465334TCONS_00005215-exon-sc0000051-1575043694:465245..465334Clytia hemisphaericaexon
TCONS_00005215-exon-sc0000051-1575043694:464801..465074TCONS_00005215-exon-sc0000051-1575043694:464801..465074Clytia hemisphaericaexon
TCONS_00005215-exon-sc0000051-1510915933:465245..465334TCONS_00005215-exon-sc0000051-1510915933:465245..465334Clytia hemisphaericaexon
TCONS_00005215-exon-sc0000051-1510915933:464801..465074TCONS_00005215-exon-sc0000051-1510915933:464801..465074Clytia hemisphaericaexon
TCONS_00005215-exon-sc0000051-1491911889:465245..465334TCONS_00005215-exon-sc0000051-1491911889:465245..465334Clytia hemisphaericaexon
TCONS_00005215-exon-sc0000051-1491911889:464801..465074TCONS_00005215-exon-sc0000051-1491911889:464801..465074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:464801..465334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.243914	0.588545	0.275494	1.73592	2.38913	1.15947	3.04877	3.34899	5.05884	8.12698	4.32383	3.09286	1.76116	7.0561	9.9298	4.20475	3.56214	1.3122	2.86314	1.22874	1.09662	0	1.3398	4.31883	4.65903
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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