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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005214 ID=TCONS_00005214|Name=TCONS_00005214|organism=Clytia hemisphaerica|type=transcript|length=354bp
AGAAAATCTGCAAACAATGTTAATCATTGGAGCTTATTTCGGTGGAATTG
CAACAGTTCTTTTGGTCTTGCTCGTCATCTTCATCGTGTACcgttattca
aaacaaagaaacaaagaTGTAAACCAAGaaccCCAAACAACTGATAGCAA
TTCAAAGACTCAGCCACCGGCAAATTACGAAGAATTACTTactttttcca
aggaaaattcaACATATACACCGTTGGGGAAGGAAAAAGTTGAATCTCAT
TATGAAGTATAAACATATCAGATAGATAGATCCTTGGGTTGATAACTTCA
CTGAGTTTAAATCAGCTAATGAAGGGTTTAAATTTATCATCAtgttatgt
tatt Run BLAST on NCBI transcript from alignment at sc0000051:457738..460658- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005214 ID=TCONS_00005214|Name=TCONS_00005214|organism=Clytia hemisphaerica|type=transcript|length=2921bp|location=Sequence derived from alignment at sc0000051:457738..460658- (Clytia hemisphaerica)
AGAAAATCTGCAAACAATGTTAATCATTGGAGCTTATTTCGGTGGAATTG
CAACAGTTCTTTTGGTCTTGCTCGTCATCTTCATCGTGTACCGTTATTCA
AAACAAAGAAACAAAGATGTAAACCAAGGTAACAATTAGTCCTTTCCAAA
TTATTTCTAGTGAAAATNAATGATACCAAACTTATAAAGATTGAAGAATT
CCTTCAAAAGTTATAGGTAAATGAAAAAAGAGTGCACACTTATCGTGAAT
AGACTTTAGACGATGTTATCGTCCATTACGGTGATAGTAAAGGCGGGAAA
AAATGGCGGTATGGCGTTATGACGATGCATGGAAAAAAATCTGTGGTAGA
ATTTCGAAGAGAAATTCTACAAACTGTAAACTCTTTTCGGCAAAAAAACT
GTTTGCGAATTTTCTTCGACTTTGGCGTTTGGGCTTACTCTTGTCTCCCG
AATAGACGTCCCCCCCGCTAATTGTTAAGCGAAAAAAAAGTCCATCCCCC
CCGCTCTTATTAAGACCCCCCCGCTAATTAAATTCGAATAGTTCAATGTT
TTATTAAAGTGTAGATAGACCTTAAACGTGTTAAAATTTTCCTTTTTTGT
TAGTATTGGTTCTTATTTTACGTGTTCATTTGCTAAAGTTTCTTTTTTGT
TGTTGAAATTGATATCAGTTAAAAAAATTATGCTTTAAATTGCCCCCCCC
CCCTCTTATTCCATCCCCCCGCTTATTAGAATTTGGAAAATTTTCCTACC
CCCCTGCTTATTCGGACCCTCCCCAGTCTATTCGGGAGACAAGAGTATTT
CTTAGATAGTGATTTGTTTTCGATTCTAAACTTTTTGCAATTCAAACTAA
TTTAATTAATTCACTAAACTAATAATTAAATATTAAATCATAACGTTACA
ATATTCAACCCTTTAAGTTTTTTAAATCCTGAGATCCTAAGGTCCTCCTA
ACTCTTAAGTCTCATGTTAAAACTCAGAGTTAAAACTCTACTTTCCAACT
GTAGTTTAAGGCGCTTAAAAATCATTTGTGGTGTTTAAAATTTCGCCGGG
AACTCCCCTTTGTCTCAAATATTTTGTCCATGATTGTAGAAGGAGTTTAG
AAGCTTTTTCATAGCTCGTTGCGCTGTGCGGACCTGCCTGGATAGTAGAA
AGATGCCTAGTAGTACAACTTCAAATTAATTCGCTAGAGGACAGAATCAA
GTAAAGCAGGGCCAGTTTTGGTGCTTCTTGAATCACTCGTTGACAAAAAA
TGATCAAAGAATGGTCAAAATCTTTAAAAAGTGGATTTTTTGTCATTTTT
TTGCATTTTTTTTTTACTTTTTGGCTTAAAGTATCGCTGGAAATACTCAC
TTTTGATACTGGTACTTAAAGGGTTAAAATGCTTAAAATATGTAGAGCTT
GGAAATAGGCCCGGGGGGGGTACTANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGGTGGCGAGCTGACGGGGGGGGGGGGTGCCGCCGA
CTTTCGAACTTTGGACCCTTTTTACCGGGACTAAAAAGGAAAAAACAAAG
GCAAATTTGTGAATTTTACGACCCTTAGCGGGACAAATTTGACCAAATTT
CCATCTTTCAGGGGTTAAAAAGTTGAAATTTTCCTATTTTTCCGACCCTT
AGTGGGACTGAAATTTGATTTTCTGATTTTTCCGACCCTTGGCGGGACTT
TGGAAGTCCAAAAAAGGTACCCTCAAGGGCGGCACATACCGTACCTTCCA
TTTGCCTAAGTACCCCCCCGCCGGAAATAGGTCAAAATTAATTAAAAAAA
AAAAAAGAATTACGACACAAGTAAATATATTGAAAGAAAACTGAATCACA
ATCCTGGCAAAATAGAGCAACCTAGTGGGTCATACCAGCCCCAAGCCAAA
GCAAAAGGCAAACAAAAGCATAATGGAAAAAGACAGTGAAGAAATTTCCT
TTCTCTCCCGCGCATTTGATTGAGAAAAAAAGAAGACATTGCATATTGAC
AAATGCGCTTTCGAATGTTTTGATCAAAATTCGAATGTTTTGTTTTGAAA
AGAATTGAAATCGAAATTGAAATGGTCGGGGTTGAAGACAATCAGCAAAT
AAACAGAAAATCTTTAAAGTTATTTTGATTTTTACTTTTCTTGAGTTTAT
ATGGATACAGCAAAACTTTCACAGTTTGATTTACTTTGTAGCTCTTTGGT
GTAAGTATCGAATTGGAGAGTTGAAAGTTTTTCGTAGTTTTGGAAAACAT
GCAAAGCCAAAGGGACTTCAACGGGATAAATCCGTTGCACGGTCGTCTCG
AGGTGGGGTACGGTTATAGAGGGTCAATACCAATCGTATTTGTGACGAGT
CCACGAGGCTTGCCGAGTCGCAATACGGTTTTTACTTATCCCGTGTAACT
AATATACCAAACATTCATATCTGACAGGGTCAACTTTTCAAACTCCCCGT
TAGCCGTCAAGGTCACAGCCCCCTTCCGGGGTATCCCACATTGGGCTTTC
TTTGAAATACAAGCACACTGTTATTGCAAAAGCAGATACATCTTTCGCAC
TGATTCAAAAGAGACTGAGACAGGGGTGTACCTTATTTTTTTCAGAACCC
CAAACAACTGATAGCAATTCAAAGACTCAGCCACCGGCAAATTACGAAGA
ATTACTTACTTTTTCCAAGGAAAATTCAACATATACACCGTTGGGGAAGG
AAAAAGTTGAATCTCATTATGAAGTATAAACATATCAGATAGATAGATCC
TTGGGTTGATAACTTCACTGAGTTTAAATCAGCTAATGAAGGGTTTAAAT
TTATCATCATGTTATGTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005214-exon-sc0000051-1575043694:460531..460658 | TCONS_00005214-exon-sc0000051-1575043694:460531..460658 | Clytia hemisphaerica | exon |
| TCONS_00005214-exon-sc0000051-1575043694:457738..457963 | TCONS_00005214-exon-sc0000051-1575043694:457738..457963 | Clytia hemisphaerica | exon |
| TCONS_00005214-exon-sc0000051-1510915933:460531..460658 | TCONS_00005214-exon-sc0000051-1510915933:460531..460658 | Clytia hemisphaerica | exon |
| TCONS_00005214-exon-sc0000051-1510915933:457738..457963 | TCONS_00005214-exon-sc0000051-1510915933:457738..457963 | Clytia hemisphaerica | exon |
| TCONS_00005214-exon-sc0000051-1491911889:460531..460658 | TCONS_00005214-exon-sc0000051-1491911889:460531..460658 | Clytia hemisphaerica | exon |
| TCONS_00005214-exon-sc0000051-1491911889:457738..457963 | TCONS_00005214-exon-sc0000051-1491911889:457738..457963 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:457738..460658 - |
Blast
The following BLAST results are available for this feature:
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