TCONS_00005200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005200
Unique NameTCONS_00005200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005200 ID=TCONS_00005200|Name=TCONS_00005200|organism=Clytia hemisphaerica|type=transcript|length=2633bp
ATTTGAATCAGACGAGATCATGCTGGATCATATGACGTCATAAGTGAACA
ATGGTCCGTCACGCCTATGAGGAGATTCATTTTCAAGTGAGGTGTGGTGT
ATAAATAAGGGTTGGATGGAGATCAACAATCAGTTCGGCTCTGATCGTTC
ACTtaatcaaaaatcaacaaagagGAAAGAGCCTTTCATGATCAGACGTA
TCCGATCAAACAGAGATCAAAATGACACCACAACCGAAAATTACAATTAA
CACGACAGGGGAGCAACCGATGCTCGACAAGATAGGTGATGAACAGTCCA
GATACGATCCTCTGGTCCAATCACAAATCGAACTTTCATCCACTGAAATC
CCAAAATTCACCAAAggagaaaaaatcatttcaaactTATTCAAGAAGAT
CGACCAGAATGAGTTGATCACAACTCCTTTACAAGCACAACCTGAGACCA
TGCAATTCTTTAACAAAGTCTTTGAAAACATCGTCGACACAAACGACGTT
GGACAACTCATTGATGGTCAGAAATGGGAAACTTGGAACGGTGAAAGGAA
AAATGAAGTGACAATTGAACGAGATTACAAAGGATTGGAGGCCAGTGATA
AATACACGGCACCGATGGATGTTTATGTGGGAGGCCCTGCAACTTGTTTT
GGAGCTGCTCTTCAAGCCAACTCTGGTGAAGATGTAAAGAATATCTTGTA
TGCTCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGTGCGAGTT
ACCATCATNCTCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGT
GCAAGTTACCATCACGTTCATGATGCTATCCCTGTCTATTACTGGCCCAA
CAACCATGGAATCTACTCGGTCTACATCACAGCTAAACACCACCTCCAAC
GAAGATTCAATCTGGAAGGTTACAAAGAAGAACTGGCAACCATCCCACAA
TGGTGTAAGATCAGATGGAACCTTGGAAACACAATGTTCACCAAAGATGC
TTGGAAGAATATCAAATTGTTTGCCAAGAATCAGAAAGAAGCTTTGGGAG
ACGTCGGCCTTTTCATTGAAGGAACACAGTGGCGGAGGGACGAGGACACG
ACCGCATACACCACCATCCGGCATTCGGGCATGTCCGAGAAAATCATTGA
ACAACTCGAAGGGTTAGAAAAACCTGTTCTCATCACAAATGATGATCGAG
CCAAATGCACTTATGTTCAACTTGGTTCAAAACAAGGTTTAGCTTGGATC
AATTCGACGTTGGATCGATTAAATCGAGTGGGTGGCGATTCAGTCGAGTT
CTTCAAGAACAGTGAGGAAGAGATTGAATCGAGAGGTTATCCAAGTGATT
TTGTGATCCAACAATTAGAGTTTCCACAACATGGCTATTTCCCTCCATAT
GCACCAAACGAATTGGAGAACTTGGTCAAAACCAAAGGAGGCAAGGTTCG
TGATGATATGCGATTGGAAAAACTCTTCGTTATGCCTTCTAGTCAAGATT
ATGATGACGTCACCGTCAACAAAGCACTGTTCCGTAACCTTACTACCGGA
CAAGCGGAAATTGTACCGGTCAAGTCCATCTCCATGTCGCTCGGCCCAAG
CATGAAATCTCTGAAAGTGAACGGTAAAAACTTGTTGAATCACACCATGT
ATGCTAGTGGTGCTTCCACAGTTTTCATGGTCAAAGTGGATGAATCGAAA
GTGGACCAATCACAGATGTTGAAATTTCGTGACAACATTGACATGAAGAA
CAACCATATTGTGCGTCTTGGTGAACGAGTCGTCAAAGATACTGACTCAG
CAAAAACTTATCGAATCTTTGTTTTACAAGTGACCGGCGGAGGACATTTC
CCGGCACGACACGCTCACGCCGAAGCTGCCATCAACACTTTCAAAGCATG
CACATGTCAACTGTTCAAATTGGACGGCCCGGATGCTACAGAGGGGATTG
AGTACGAAGTTGTTCAAGTCAGATCATGTGCTCGAAGTGTCGGCTCGCAA
AACGTGTTTCGCCTCAATCTCCCAGCAACCAATGCCGCAATGCTTTATGG
GATTGGTGGTATTGGCATCACAACAATGGCCCCAAATGCACTTTTAATGA
GAGCAGCTTTGGCGGAACGTGCCAAACTCGGGAACTCTCAACTCGGCTAT
AAGCCAGAAGAATACAAAAATAACTTGAGCCAGGGACAATTTGCTGAGAT
TCCTTTCTGGAATAAAGAAAACCCATTTGCAGGACGTGATTACGCCAGAT
GGGTAGATCATGTTGGCCAACCAAAACAGGTGGCTCCAATCTTATACCCA
AATGCACCAAAACTTCCACAGTTTGTATACACAAAACAATATTCAATGGC
AGCTTCACAGATGACTCGGTTATTTATGAAGTATAAAACACGTGTGGCTA
AACTGATATAAGAACATTTGTTCCAGAACAAGCTTTTAatcaaatacttt
tttaataTTGCCAAACGATATATCGTGAGAGATAAAGCTATCATGTGATC
ACTATTTACTTCAATGTACATAAATTAAAGAAGTTTGTTATCATTATATA
AATTATTACTTCTCAACAATAAgtctttgaaaagtttttttctcgtaCTT
CGCAAATTCGAAAGTTTGGTGCTAAAAAACAGT
Run BLAST on NCBI

protein sequence of TCONS_00005200-protein

>TCONS_00005200-protein ID=TCONS_00005200-protein|Name=TCONS_00005200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=729bp
MTPQPKITINTTGEQPMLDKIGDEQSRYDPLVQSQIELSSTEIPKFTKGE
KIISNLFKKIDQNELITTPLQAQPETMQFFNKVFENIVDTNDVGQLIDGQ
KWETWNGERKNEVTIERDYKGLEASDKYTAPMDVYVGGPATCFGAALQAN
SGEDVKNILYAHDGCRGTSNWKGSASYHHXHDGCRGTSNWKGSASYHHVH
DAIPVYYWPNNHGIYSVYITAKHHLQRRFNLEGYKEELATIPQWCKIRWN
LGNTMFTKDAWKNIKLFAKNQKEALGDVGLFIEGTQWRRDEDTTAYTTIR
HSGMSEKIIEQLEGLEKPVLITNDDRAKCTYVQLGSKQGLAWINSTLDRL
NRVGGDSVEFFKNSEEEIESRGYPSDFVIQQLEFPQHGYFPPYAPNELEN
LVKTKGGKVRDDMRLEKLFVMPSSQDYDDVTVNKALFRNLTTGQAEIVPV
KSISMSLGPSMKSLKVNGKNLLNHTMYASGASTVFMVKVDESKVDQSQML
KFRDNIDMKNNHIVRLGERVVKDTDSAKTYRIFVLQVTGGGHFPARHAHA
EAAINTFKACTCQLFKLDGPDATEGIEYEVVQVRSCARSVGSQNVFRLNL
PATNAAMLYGIGGIGITTMAPNALLMRAALAERAKLGNSQLGYKPEEYKN
NLSQGQFAEIPFWNKENPFAGRDYARWVDHVGQPKQVAPILYPNAPKLPQ
FVYTKQYSMAASQMTRLFMKYKTRVAKLI
Run BLAST on NCBI

transcript from alignment at sc0000051:367800..372164-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005200 ID=TCONS_00005200|Name=TCONS_00005200|organism=Clytia hemisphaerica|type=transcript|length=4365bp|location=Sequence derived from alignment at sc0000051:367800..372164- (Clytia hemisphaerica)
ATTTGAATCAGACGAGATCATGCTGGATCATATGACGTCATAAGTGAACA ATGGTCCGTCACGCCTATGAGGAGATTCATTTTCAAGTGAGGTGTGGTGT ATAAATAAGGGTTGGATGGAGATCAACAATCAGTTCGGCTCTGATCGTTC ACTTAATCAAAAATCAACAAAGAGGAAAGAGCCTTTCATGATCAGACGTA TCCGATGTAAGTTTTGTTTTATATTTATAAATAAGATGAGGGAAAGTGAC CAGTCGTCTGCATCAATGGGCTTTTCCAGAAAAAAATCGTGCACCCCCTG TTGAGGAGGTCCATTTCCGTTCCAAGGGGGTAAGGTTTGAAATGCAGTGG AATTCCATAAGGGTAGACGAAAATCCGTCAAAAATAAGTGGAATTCCAAG GGGGTAATGATCCTAAAATTGCCTGGAAATCCAAGGGGGTAGGTCACAAA AGGTTGGACCTCCTCAACAGGGGGTGCACGTTTTTTTTCTGGAAAAGCCC AATTGACAGGGAAAGTTTTTGAGCAATTGATCTACTAAGCACCTCTCTAA AACTTGAAAATTATTTTGAATTGTTGGCTCGGACATATACGCGATATCTT AAAAACTTAGGGGCCACTCACAATATATCGATTTTTCCCACGAGTCCAAG ACAGTCTAGAAACCAATTTTTTTGTGTGAAAAAACCATGAAAAATAGACG ACAAAAGTATGCGTAGCAAGAGCAGTTAACAAAGTAAAAAAAATATATGA CTTCAATTCAATCAGCCTCGAAAATCGATGTTTGTTATGATTGATTATTT TTTTAGCGTTACTGCCTGTGACCCATCCTCCCTCTCGCATCAATTTGGCG TTAGTCGTGGCAAACATCGATATACGAGTGGCCCCTTAGCACCACCAACA GATAGCTGTAATACGAATGTGTCAATCATTTCATGGACCCATTCGTTTCA AAAATTCACTTCGGCATAATTCATTCCATTTTAGCAAANACCAACAGATA GCTGTAATACGAATGTGTCAATCATTTCATTGACCCATTCGTTTCAAAAG TTCACTTCGGCATAATTCATTCCATTTTAGCAAACAGAGATCAAAATGAC ACCACAACCGAAAATTACAATTAACACGACAGGGGAGCAACCGATGCTCG ACAAGATAGGTGATGAACAGTCCAGATACGATCCTCTGGTCCAATCACAA ATCGAACTTTCATCCACTGAAATCCCAAAATTCACCAAAGGAGAAAAAAT CATTTCAAACTTATTCAAGAAGATCGACCAGAATGAGTTGATCACAACTC CTTTACAAGCACAACCTGAGACCATGCAATTCTTTAACAAAGTCTTTGAA AACATCGTCGACACAAACGACGTTGGACAACTCATTGATGGTCAGAAATG GGAAACTTGGAACGGTGAAAGGAAAAATGAAGTGACAATTGAACGAGATT ACAAAGGATTGGAGGCCAGTGATAAATACACGGCACCGATGGATGTTTAT GTGGGAGGCCCTGCAACTTGTTTTGGAGCTGCTCTTCAAGCCAACTCTGG TGAAGATGTAAAGAATATCTTGTATGCTCATGATGGATGCAGAGGAACCA GCAATTGGAAAGGAAGTGCGAGTTACCATCATNCTCATGATGGATGCAGA GGAACCAGCAATTGGAAAGGAAGTGCAAGTTACCATCACGTTCATGATGC TATCCCTGTCTATTACTGGCCCAACAACCATGGAATCTACTCGGTCTACA TCACAGCTAAACACCACCTCCAACGAAGATTCAATCTGGAAGGTTACAAA GAAGAACTGGCAACCATCCCACAATGGTGTAAGATCAGATGGAACCTTGG AAACACAATGTTCACCAAAGATGCTTGGAAGAATATCAAATTGTTTGCCA AGAATCAGAAAGAAGCTTTGGGAGACGTCGGCCTTTTCATTGAAGGTGTG TATGGGTTATTCTATTCTTAGAAAATTTGACATTTTTCTATTCTTGGCGA TCCTTTTTTCATTCCACATGATAATACGCACGAAAGAAAGTGCTTCTTAC AACAATCAGTGACAAAATATGTGGCAATTTCTTCAAAAATCCCTCCCCCC CTATAATATCAGTGTAAATGTGAATTTTTTCTGAGCATTATGTCAGCCTT TCCACCCATCATACTAGATACTAGGAGGGGGGAGGGAATTCTTGCCACAA TATTTAGTCACAGAATGTAGTAATAATTTATTGTCAAAAATTTTCCCGAC CAAGAATTTCAGGATTTTCGCTAATTTTCGAAAATTCACGAAATCAAATG GTCGCGTAAAAAATCAATATTGCTGGATGGCGAAAATAAATTCCAACGAA AAAAAAAAAAAAATTCTTCAAATTCGGGAATTTCTTTTATTTTTGTCAAT CTCATTTATCAAAAATTCTCTTTTTCTAAACTTTTCTAGCAAGGGACTTA AGCACTCATCAATACAAATACTTTCACTCTCCACTTTATTAACAAGGAGA AATTTTTTACTCCAATCCTCGTGATCCGCATAATGAAATTTCCACGAATA ATTTCATTAAATCAAATTCGCGAAATGAAATTCCCGTAAAATACGAATAA TTTCGCGAATGGCCCGACTCACGAAATTTTCTGGTCGCGAATATTAAAAT AAATTAATTTTAAAATTGTTATGATTGCAGGAACACAGTGGCGGAGGGAC GAGGACACGACCGCATACACCACCATCCGGCATTCGGGCATGTCCGAGAA AATCATTGAACAACTCGAAGGGTTAGAAAAACCTGTTCTCATCACAAATG ATGATCGAGCCAAATGCACTTATGTTCAACTTGGTTCAAAACAAGGTTTA GCTTGGATCAATTCGACGTTGGATCGATTAAATCGAGTGGGTGGCGATTC AGTCGAGTTCTTCAAGGTAGGTTAATGAAAGTATTGCCCCTTCCCCTTCC ATCTTACAGAATATCAATTTTCAAAAGTGGTTTGTATCAATGTGACAAGT TTATTGTACAGCTCAAACAAACGTTCTCATCATTTATAGAACAGTGAGGA AGAGATTGAATCGAGAGGTTATCCAAGTGATTTTGTGATCCAACAATTAG AGTTTCCACAACATGGCTATTTCCCTCCATATGCACCAAACGAATTGGAG AACTTGGTCAAAACCAAAGGAGGCAAGGTTCGTGATGATATGCGATTGGA AAAACTCTTCGTTATGCCTTCTAGTCAAGATTATGATGACGTCACCGTCA ACAAAGCACTGTTCCGTAACCTTACTACCGGACAAGCGGAAATTGTACCG GTCAAGTCCATCTCCATGTCGCTCGGCCCAAGCATGAAATCTCTGAAAGT GAACGGTAAAAACTTGTTGAATCACACCATGTATGCTAGTGGTGCTTCCA CAGTTTTCATGGTCAAAGTGGATGAATCGAAAGTGGACCAATCACAGATG TTGAAATTTCGTGACAACATTGACATGAAGAACAACCATATTGTGCGTCT TGGTGAACGAGTCGTCAAAGATACTGACTCAGCAAAAACTTATCGAATCT TTGTTTTACAAGTGACCGGCGGAGGACATTTCCCGGCACGACACGCTCAC GCCGAAGCTGCCATCAACACTTTCAAAGCATGCACATGTCAACTGTTCAA ATTGGACGGCCCGGATGCTACAGAGGGGATTGAGTACGAAGTTGTTCAAG TCAGATCATGTGCTCGAAGTGTCGGCTCGCAAAACGTGTTTCGCCTCAAT CTCCCAGCAACCAATGCCGCAATGCTTTATGGGATTGGTGGTATTGGCAT CACAACAATGGCCCCAAATGCACTTTTAATGAGAGCAGCTTTGGCGGAAC GTGCCAAACTCGGGAACTCTCAACTCGGCTATAAGCCAGAAGAATACAAA AATAACTTGAGCCAGGGACAATTTGCTGAGATTCCTTTCTGGAATAAAGA AAACCCATTTGCAGGACGTGATTACGCCAGATGGGTAGATCATGTTGGCC AACCAAAACAGGTGGCTCCAATCTTATACCCAAATGCACCAAAACTTCCA CAGTTTGTATACACAAAACAATATTCAATGGCAGCTTCACAGATGACTCG GTTATTTATGAAGTATAAAACACGTGTGGCTAAACTGATATAAGAACATT TGTTCCAGAACAAGCTTTTAATCAAATACTTTTTTAATATTGCCAAACGA TATATCGTGAGAGATAAAGCTATCATGTGATCACTATTTACTTCAATGTA CATAAATTAAAGAAGTTTGTTATCATTATATAAATTATTACTTCTCAACA ATAAGTCTTTGAAAAGTTTTTTTCTCGTACTTCGCAAATTCGAAAGTTTG GTGCTAAAAAACAGT

Coding sequence (CDS) from alignment at sc0000051:367800..372164-

>TCONS_00005200 ID=TCONS_00005200|Name=TCONS_00005200|organism=Clytia hemisphaerica|type=CDS|length=6570bp|location=Sequence derived from alignment at sc0000051:367800..372164- (Clytia hemisphaerica)
AACAGTGAGGAAGAGATTGAATCGAGAGGTTATCCAAGTGATTTTGTGAT
CCAACAATTAGAGTTTCCACAACATGGCTATTTCCCTCCATATGCACCAA
ACGAATTGGAGAACTTGGTCAAAACCAAAGGAGGCAAGGTTCGTGATGAT
ATGCGATTGGAAAAACTCTTCGTTATGCCTTCTAGTCAAGATTATGATGA
CGTCACCGTCAACAAAGCACTGTTCCGTAACCTTACTACCGGACAAGCGG
AAATTGTACCGGTCAAGTCCATCTCCATGTCGCTCGGCCCAAGCATGAAA
TCTCTGAAAGTGAACGGTAAAAACTTGTTGAATCACACCATGTATGCTAG
TGGTGCTTCCACAGTTTTCATGGTCAAAGTGGATGAATCGAAAGTGGACC
AATCACAGATGTTGAAATTTCGTGACAACATTGACATGAAGAACAACCAT
ATTGTGCGTCTTGGTGAACGAGTCGTCAAAGATACTGACTCAGCAAAAAC
TTATCGAATCTTTGTTTTACAAGTGACCGGCGGAGGACATTTCCCGGCAC
GACACGCTCACGCCGAAGCTGCCATCAACACTTTCAAAGCATGCACATGT
CAACTGTTCAAATTGGACGGCCCGGATGCTACAGAGGGGATTGAGTACGA
AGTTGTTCAAGTCAGATCATGTGCTCGAAGTGTCGGCTCGCAAAACGTGT
TTCGCCTCAATCTCCCAGCAACCAATGCCGCAATGCTTTATGGGATTGGT
GGTATTGGCATCACAACAATGGCCCCAAATGCACTTTTAATGAGAGCAGC
TTTGGCGGAACGTGCCAAACTCGGGAACTCTCAACTCGGCTATAAGCCAG
AAGAATACAAAAATAACTTGAGCCAGGGACAATTTGCTGAGATTCCTTTC
TGGAATAAAGAAAACCCATTTGCAGGACGTGATTACGCCAGATGGGTAGA
TCATGTTGGCCAACCAAAACAGGTGGCTCCAATCTTATACCCAAATGCAC
CAAAACTTCCACAGTTTGTATACACAAAACAATATTCAATGGCAGCTTCA
CAGATGACTCGGTTATTTATGAAGTATAAAACACGTGTGGCTAAACTGAT
ATAAGAACACAGTGGCGGAGGGACGAGGACACGACCGCATACACCACCAT
CCGGCATTCGGGCATGTCCGAGAAAATCATTGAACAACTCGAAGGGTTAG
AAAAACCTGTTCTCATCACAAATGATGATCGAGCCAAATGCACTTATGTT
CAACTTGGTTCAAAACAAGGTTTAGCTTGGATCAATTCGACGTTGGATCG
ATTAAATCGAGTGGGTGGCGATTCAGTCGAGTTCTTCAAGATGACACCAC
AACCGAAAATTACAATTAACACGACAGGGGAGCAACCGATGCTCGACAAG
ATAGGTGATGAACAGTCCAGATACGATCCTCTGGTCCAATCACAAATCGA
ACTTTCATCCACTGAAATCCCAAAATTCACCAAAGGAGAAAAAATCATTT
CAAACTTATTCAAGAAGATCGACCAGAATGAGTTGATCACAACTCCTTTA
CAAGCACAACCTGAGACCATGCAATTCTTTAACAAAGTCTTTGAAAACAT
CGTCGACACAAACGACGTTGGACAACTCATTGATGGTCAGAAATGGGAAA
CTTGGAACGGTGAAAGGAAAAATGAAGTGACAATTGAACGAGATTACAAA
GGATTGGAGGCCAGTGATAAATACACGGCACCGATGGATGTTTATGTGGG
AGGCCCTGCAACTTGTTTTGGAGCTGCTCTTCAAGCCAACTCTGGTGAAG
ATGTAAAGAATATCTTGTATGCTCATGATGGATGCAGAGGAACCAGCAAT
TGGAAAGGAAGTGCGAGTTACCATCATNCTCATGATGGATGCAGAGGAAC
CAGCAATTGGAAAGGAAGTGCAAGTTACCATCACGTTCATGATGCTATCC
CTGTCTATTACTGGCCCAACAACCATGGAATCTACTCGGTCTACATCACA
GCTAAACACCACCTCCAACGAAGATTCAATCTGGAAGGTTACAAAGAAGA
ACTGGCAACCATCCCACAATGGTGTAAGATCAGATGGAACCTTGGAAACA
CAATGTTCACCAAAGATGCTTGGAAGAATATCAAATTGTTTGCCAAGAAT
CAGAAAGAAGCTTTGGGAGACGTCGGCCTTTTCATTGAAGAACAGTGAGG
AAGAGATTGAATCGAGAGGTTATCCAAGTGATTTTGTGATCCAACAATTA
GAGTTTCCACAACATGGCTATTTCCCTCCATATGCACCAAACGAATTGGA
GAACTTGGTCAAAACCAAAGGAGGCAAGGTTCGTGATGATATGCGATTGG
AAAAACTCTTCGTTATGCCTTCTAGTCAAGATTATGATGACGTCACCGTC
AACAAAGCACTGTTCCGTAACCTTACTACCGGACAAGCGGAAATTGTACC
GGTCAAGTCCATCTCCATGTCGCTCGGCCCAAGCATGAAATCTCTGAAAG
TGAACGGTAAAAACTTGTTGAATCACACCATGTATGCTAGTGGTGCTTCC
ACAGTTTTCATGGTCAAAGTGGATGAATCGAAAGTGGACCAATCACAGAT
GTTGAAATTTCGTGACAACATTGACATGAAGAACAACCATATTGTGCGTC
TTGGTGAACGAGTCGTCAAAGATACTGACTCAGCAAAAACTTATCGAATC
TTTGTTTTACAAGTGACCGGCGGAGGACATTTCCCGGCACGACACGCTCA
CGCCGAAGCTGCCATCAACACTTTCAAAGCATGCACATGTCAACTGTTCA
AATTGGACGGCCCGGATGCTACAGAGGGGATTGAGTACGAAGTTGTTCAA
GTCAGATCATGTGCTCGAAGTGTCGGCTCGCAAAACGTGTTTCGCCTCAA
TCTCCCAGCAACCAATGCCGCAATGCTTTATGGGATTGGTGGTATTGGCA
TCACAACAATGGCCCCAAATGCACTTTTAATGAGAGCAGCTTTGGCGGAA
CGTGCCAAACTCGGGAACTCTCAACTCGGCTATAAGCCAGAAGAATACAA
AAATAACTTGAGCCAGGGACAATTTGCTGAGATTCCTTTCTGGAATAAAG
AAAACCCATTTGCAGGACGTGATTACGCCAGATGGGTAGATCATGTTGGC
CAACCAAAACAGGTGGCTCCAATCTTATACCCAAATGCACCAAAACTTCC
ACAGTTTGTATACACAAAACAATATTCAATGGCAGCTTCACAGATGACTC
GGTTATTTATGAAGTATAAAACACGTGTGGCTAAACTGATATAAGAACAC
AGTGGCGGAGGGACGAGGACACGACCGCATACACCACCATCCGGCATTCG
GGCATGTCCGAGAAAATCATTGAACAACTCGAAGGGTTAGAAAAACCTGT
TCTCATCACAAATGATGATCGAGCCAAATGCACTTATGTTCAACTTGGTT
CAAAACAAGGTTTAGCTTGGATCAATTCGACGTTGGATCGATTAAATCGA
GTGGGTGGCGATTCAGTCGAGTTCTTCAAGATGACACCACAACCGAAAAT
TACAATTAACACGACAGGGGAGCAACCGATGCTCGACAAGATAGGTGATG
AACAGTCCAGATACGATCCTCTGGTCCAATCACAAATCGAACTTTCATCC
ACTGAAATCCCAAAATTCACCAAAGGAGAAAAAATCATTTCAAACTTATT
CAAGAAGATCGACCAGAATGAGTTGATCACAACTCCTTTACAAGCACAAC
CTGAGACCATGCAATTCTTTAACAAAGTCTTTGAAAACATCGTCGACACA
AACGACGTTGGACAACTCATTGATGGTCAGAAATGGGAAACTTGGAACGG
TGAAAGGAAAAATGAAGTGACAATTGAACGAGATTACAAAGGATTGGAGG
CCAGTGATAAATACACGGCACCGATGGATGTTTATGTGGGAGGCCCTGCA
ACTTGTTTTGGAGCTGCTCTTCAAGCCAACTCTGGTGAAGATGTAAAGAA
TATCTTGTATGCTCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAA
GTGCGAGTTACCATCATNCTCATGATGGATGCAGAGGAACCAGCAATTGG
AAAGGAAGTGCAAGTTACCATCACGTTCATGATGCTATCCCTGTCTATTA
CTGGCCCAACAACCATGGAATCTACTCGGTCTACATCACAGCTAAACACC
ACCTCCAACGAAGATTCAATCTGGAAGGTTACAAAGAAGAACTGGCAACC
ATCCCACAATGGTGTAAGATCAGATGGAACCTTGGAAACACAATGTTCAC
CAAAGATGCTTGGAAGAATATCAAATTGTTTGCCAAGAATCAGAAAGAAG
CTTTGGGAGACGTCGGCCTTTTCATTGAAGAACAGTGAGGAAGAGATTGA
ATCGAGAGGTTATCCAAGTGATTTTGTGATCCAACAATTAGAGTTTCCAC
AACATGGCTATTTCCCTCCATATGCACCAAACGAATTGGAGAACTTGGTC
AAAACCAAAGGAGGCAAGGTTCGTGATGATATGCGATTGGAAAAACTCTT
CGTTATGCCTTCTAGTCAAGATTATGATGACGTCACCGTCAACAAAGCAC
TGTTCCGTAACCTTACTACCGGACAAGCGGAAATTGTACCGGTCAAGTCC
ATCTCCATGTCGCTCGGCCCAAGCATGAAATCTCTGAAAGTGAACGGTAA
AAACTTGTTGAATCACACCATGTATGCTAGTGGTGCTTCCACAGTTTTCA
TGGTCAAAGTGGATGAATCGAAAGTGGACCAATCACAGATGTTGAAATTT
CGTGACAACATTGACATGAAGAACAACCATATTGTGCGTCTTGGTGAACG
AGTCGTCAAAGATACTGACTCAGCAAAAACTTATCGAATCTTTGTTTTAC
AAGTGACCGGCGGAGGACATTTCCCGGCACGACACGCTCACGCCGAAGCT
GCCATCAACACTTTCAAAGCATGCACATGTCAACTGTTCAAATTGGACGG
CCCGGATGCTACAGAGGGGATTGAGTACGAAGTTGTTCAAGTCAGATCAT
GTGCTCGAAGTGTCGGCTCGCAAAACGTGTTTCGCCTCAATCTCCCAGCA
ACCAATGCCGCAATGCTTTATGGGATTGGTGGTATTGGCATCACAACAAT
GGCCCCAAATGCACTTTTAATGAGAGCAGCTTTGGCGGAACGTGCCAAAC
TCGGGAACTCTCAACTCGGCTATAAGCCAGAAGAATACAAAAATAACTTG
AGCCAGGGACAATTTGCTGAGATTCCTTTCTGGAATAAAGAAAACCCATT
TGCAGGACGTGATTACGCCAGATGGGTAGATCATGTTGGCCAACCAAAAC
AGGTGGCTCCAATCTTATACCCAAATGCACCAAAACTTCCACAGTTTGTA
TACACAAAACAATATTCAATGGCAGCTTCACAGATGACTCGGTTATTTAT
GAAGTATAAAACACGTGTGGCTAAACTGATATAAGAACACAGTGGCGGAG
GGACGAGGACACGACCGCATACACCACCATCCGGCATTCGGGCATGTCCG
AGAAAATCATTGAACAACTCGAAGGGTTAGAAAAACCTGTTCTCATCACA
AATGATGATCGAGCCAAATGCACTTATGTTCAACTTGGTTCAAAACAAGG
TTTAGCTTGGATCAATTCGACGTTGGATCGATTAAATCGAGTGGGTGGCG
ATTCAGTCGAGTTCTTCAAGATGACACCACAACCGAAAATTACAATTAAC
ACGACAGGGGAGCAACCGATGCTCGACAAGATAGGTGATGAACAGTCCAG
ATACGATCCTCTGGTCCAATCACAAATCGAACTTTCATCCACTGAAATCC
CAAAATTCACCAAAGGAGAAAAAATCATTTCAAACTTATTCAAGAAGATC
GACCAGAATGAGTTGATCACAACTCCTTTACAAGCACAACCTGAGACCAT
GCAATTCTTTAACAAAGTCTTTGAAAACATCGTCGACACAAACGACGTTG
GACAACTCATTGATGGTCAGAAATGGGAAACTTGGAACGGTGAAAGGAAA
AATGAAGTGACAATTGAACGAGATTACAAAGGATTGGAGGCCAGTGATAA
ATACACGGCACCGATGGATGTTTATGTGGGAGGCCCTGCAACTTGTTTTG
GAGCTGCTCTTCAAGCCAACTCTGGTGAAGATGTAAAGAATATCTTGTAT
GCTCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGTGCGAGTTA
CCATCATNCTCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGTG
CAAGTTACCATCACGTTCATGATGCTATCCCTGTCTATTACTGGCCCAAC
AACCATGGAATCTACTCGGTCTACATCACAGCTAAACACCACCTCCAACG
AAGATTCAATCTGGAAGGTTACAAAGAAGAACTGGCAACCATCCCACAAT
GGTGTAAGATCAGATGGAACCTTGGAAACACAATGTTCACCAAAGATGCT
TGGAAGAATATCAAATTGTTTGCCAAGAATCAGAAAGAAGCTTTGGGAGA
CGTCGGCCTTTTCATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002956XLOC_002956Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005200-proteinTCONS_00005200-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005200-exon-sc0000051-1575043694:371959..372164TCONS_00005200-exon-sc0000051-1575043694:371959..372164Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1575043694:370220..371084TCONS_00005200-exon-sc0000051-1575043694:370220..371084Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1575043694:369249..369484TCONS_00005200-exon-sc0000051-1575043694:369249..369484Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1575043694:367800..369125TCONS_00005200-exon-sc0000051-1575043694:367800..369125Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1510915933:371959..372164TCONS_00005200-exon-sc0000051-1510915933:371959..372164Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1510915933:370220..371084TCONS_00005200-exon-sc0000051-1510915933:370220..371084Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1510915933:369249..369484TCONS_00005200-exon-sc0000051-1510915933:369249..369484Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1510915933:367800..369125TCONS_00005200-exon-sc0000051-1510915933:367800..369125Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1491911889:371959..372164TCONS_00005200-exon-sc0000051-1491911889:371959..372164Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1491911889:370220..371084TCONS_00005200-exon-sc0000051-1491911889:370220..371084Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1491911889:369249..369484TCONS_00005200-exon-sc0000051-1491911889:369249..369484Clytia hemisphaericaexon
TCONS_00005200-exon-sc0000051-1491911889:367800..369125TCONS_00005200-exon-sc0000051-1491911889:367800..369125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:367800..372164 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.255865 0.346758 0.554144 0.598631 0.361428 0.331597 0.456632 0.605996 1.03916 14.2608 1.63288 7.67016 6.98024 2.41461 0.83091 1.00726 0.236043 1.1674 2.68507 14.0715 0.30974 0.215625 1.82092 4.47253 23.0026 142.815 78.0019 86.8338 51.3716 23.7578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top