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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005199 ID=TCONS_00005199|Name=TCONS_00005199|organism=Clytia hemisphaerica|type=transcript|length=1325bpRun BLAST on NCBI protein sequence of TCONS_00005199-protein >TCONS_00005199-protein ID=TCONS_00005199-protein|Name=TCONS_00005199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp MVTINNQLILDEEYDENYIPTEEEIFEYARVIDIDPEREPELMYIARQGIRun BLAST on NCBI transcript from alignment at sc0000051:334767..351118- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005199 ID=TCONS_00005199|Name=TCONS_00005199|organism=Clytia hemisphaerica|type=transcript|length=16352bp|location=Sequence derived from alignment at sc0000051:334767..351118- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:334767..351118- >TCONS_00005199 ID=TCONS_00005199|Name=TCONS_00005199|organism=Clytia hemisphaerica|type=CDS|length=8280bp|location=Sequence derived from alignment at sc0000051:334767..351118- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005199 vs. Swiss-Prot (Human)
Match: CE164 (Centrosomal protein of 164 kDa OS=Homo sapiens GN=CEP164 PE=1 SV=3) HSP 1 Score: 158.688 bits (400), Expect = 3.522e-41 Identity = 63/98 (64.29%), Postives = 84/98 (85.71%), Query Frame = 3
Query: 294 VTINNQLILDEEYDENYIPTEEEIFEYARVIDIDPEREPELMYIARQGIVAPLPADWKPCQDPSGEIYYFNFSSGDSVWDHPCDEHFREMVAKERDML 587
+ I +QL+L+E+YDE YIP+E+EI E+AR I IDP +EPELM++AR+GIVAPLP +WKPCQD +G+IYYFNF++G S+WDHPCDEH+R +V +ER L
Sbjct: 6 LRIGDQLVLEEDYDETYIPSEQEILEFAREIGIDPIKEPELMWLAREGIVAPLPGEWKPCQDITGDIYYFNFANGQSMWDHPCDEHYRSLVIQERAKL 103 The following BLAST results are available for this feature:
BLAST of TCONS_00005199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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