TCONS_00005181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005181
Unique NameTCONS_00005181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005181 ID=TCONS_00005181|Name=TCONS_00005181|organism=Clytia hemisphaerica|type=transcript|length=1617bp
CTAAAACGGTTTTATTGAGGAAATCCACAACAGCTTCATAAAGAAGTTTG
TATTTTTTGCGTTTTGACTTTCCTGGCTTTTCGTGGAAGCACCTGAAAGA
TTTCGAGATAGAGTCGTTTGCTGGGAGTGTTATATAGAATAATTGAGAGC
GAAGCATCGAGGatttGCACCAAGCTGTGTTATCAAAAGAAGAGATGACG
GTTTTCCAAGTCAGTGGTGCTCTTCAATCGCACGAGAGTTACATCCGCAT
CATGACAGCCATCAATCATGCCGGACTTGAGCTCTACTTCAAAGCGTTCC
ATCACAGGGACGAACTACCCGGTGGTCTTGGTCTTCCAACAGAACCGGAA
AAACTTTACAAGCATCTACAAAAACATCAATCAGAATTTGACGACCTTCG
CTCCAAAGGACAAATCACTGAAAGAGAGTATCTAACCATTTTCCCAGCTG
GCAAGAAAGAGACTTATTCTCAGGAATTCTCATTCCcgcttttccaaaaa
ttgttACAAATGTTTGACCGAGCAGGACTTGATGCGGAAACAGCAAACTC
GGATGACGAGCGAAACGTATTTTTGCAAGAAATGTCGAAATTTGAATACA
TATTGAAAGATAAGAAACTGGTCAAAAAGATTAACAATTCTGATGAGACT
TTCAATGAAATTTGGGATGACGTCATTCAGatcttgaaaaatgtcaaata
tgatataacacgaatcgAATCCTTACGAACAAGCGATCTAgaagaaaata
ataaattccGATTCGCTCTCTTAAAATCCGAAGTCAACGCTTTATTGTGG
GAATGTGATGATTGTTTCAAGACTGTCAAAATGAACCATCTAGCCTTGGA
TCGCCTCAAAGGGAACTTCCAGGCTGCACTCTCTGAAGTCAAAACAGAAA
ATAACAACGCTAAAACAGCTAACGAGTTAAAAGAACTGAATACAGTCACA
GATGAActtcaaaaatctgaaaataaaatcatGGTTCAAAAACAACAGCT
AAACGAAATTGTTCCAAAtattaaattttggcgggaaaagAACATTGaag
gtgacgtcatcatttgtgACGAGAACATTTCGAAATTGAGACATGAAGTA
AATGAACAGACCAGACGAGTCGGTGATTTGTTCAACACCGTATCTTTCGA
TATCATTCACCTGAAGGAGCGAGCATACAGTGCGACTGGAGAAGCTAAAA
ACATCGGACTTCCTTTACATAAATCGCATTGAGTTTTGCGActgtttcag
atttttttttttgtacataTTATTAAGGTCTATTATctttatatttatta
ttttaatgcaagttttatttttaatttgttctagGTCTTTCAATTGATTA
TTCCGAAATTGATGCTGAATATTTTGGGAACTTTTTTGGATTGACCGGTT
GAACCTTTAGTCTTTTGCTTTAttgatttcagaaaaaaataaaagataga
GAATTTTGTATAGATTTCACTGGCGTGTCATTTCATTGAGTTACTTTAAA
CAACACTTCTacgcgtttttttttattagaacctagtttataagaacata
taggctgaaattcgtcgaaaaattaagaacatcttaagaacatgcccagc
ctcagtttggaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000051:108262..111561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005181 ID=TCONS_00005181|Name=TCONS_00005181|organism=Clytia hemisphaerica|type=transcript|length=3300bp|location=Sequence derived from alignment at sc0000051:108262..111561- (Clytia hemisphaerica)
CTAAAACGGTTTTATTGAGGAAATCCACAACAGCTTCATAAAGAAGTTTG
TATTTTTTGCGTTTTGACTTTCCTGGCTTTTCGTGGAAGCACCTGAAAGA
TTTCGAGATAGAGTCGTTTGCTGGGAGTGTTATATAGAATAATTGAGAGC
GAAGCATCGAGGGTATGTTCACATCTTGTTCTCAATACTTTTGGTAATCT
TTCAGTAAAGATAGTACTGTACACTACAAAATACAAATTCAATGTGCATA
GATGATTTATAAAAGGCCCCAGTACCAAATTACCTCATCTTCAGTAATTT
TTATTCGTCCTCCCAATATACTTCTTCCCTTTGGAAATGTGAAAATAACA
AATATCAGTTGATTGGTCATTTCTATAGAAGTATATTGCGCTCTTGATGA
TATCGTGTTGTTATGAATGAACTGTTCTAAGCACATCCCATTTCGACTAT
CTTCTAGTATTTTCTCCCTCCTCCCTCTTTGACTGTAAGAACAAAATTTT
TTCTGTTCAATATAATCAAGACTTTCATTGACAAGGTTCAGTTGGTTGTA
TGTGGTGATTAGTACACGTTTTTTTTATAATAGAGCAAACTATACGAGAA
CATAAGGCTTTGTGGACTCAAAAACACCCGTTTTCTGAGCAAAATGGGTA
AAAATGGTTACGAAATGGTGATTTTAAGAACATTTTTAGGCTTGAAACCC
AAAAAGTCAAGAACATCCCAAAGCTTTAAAAAAACGTGTATTCCATGTCG
AGTTGTATAAGTCCATTTATTCGAATATTTGTTACTTTTATTTTGGCAAA
CGAATATAAATGTAAGAAACAAAAGATATCACAGTTTCTTATAAAAAACT
TTCTTTGTATGTATATCCCACTTTCTTGTATAAACAGGACAATACTTCAA
AGTTAATTACTTCCACCTTCGAAATAACTGAAATCAGCATTCTAAAAAAC
CTAATTGTCAATTATACGTATATCGTTTTCATTAACAAAATTAACAGCAT
AAACGAGGCTATTACAAACTGACGTATTTGTAAACTTTTTTAATCTCTAC
CAATTTTGAACAGAGCAGTTCATATCATCAATCTTAAGTCGGCGTGTGAG
AGAAAGTTGATGTCAAAATCTTTATTGGATTTTTGTTGTAAATCAGTTCA
AGGCTTCACTCACTGTGCTGAATTTTTGTTATGTTTTGAAATCAAGAGAA
AGAGAAAGTTATTTCATGCTGAAAACTTGCTAAGAAACAGGAAAAGTTTT
GCTGGTTATGTCAAAATTGCACTTTCCATTTAAGTTATGGTAATTGAAAG
TTGTTGATGTCATTTTAAATTCCTGGAAGAAAGAAATTTGGTGATACCCA
CAATAAGTGTTGTATTTTTGTCAGTAAGGTCAATACGTTGTTTTTTGTTT
TCGGTGGTGGAACGGTAGTTTAGTTTTGATGAGAAAAGTTGTGTACTTGA
CCTCTGTAAATCCTTAAGGTGAGGTGTTTGGTACAAGCTCAATCAATATT
TTTAAATTTCTTCCTTCGCTTTTATTCCTTTAAGAGATAAATAACTCCTC
TTGTATTATACATTTGGGAAGTAAGCAATTCGATACATACACCCTGTAAG
GGGTTATAACGTTGTAAAACTCGAGCCTCTTCATGTCCATATTAAAGGAG
TCGAATTATGGAAGATTTGCCGAATGATACTCTATAATTCGAACTTGAAC
GGGATATCTTATTTGTTCGAATTACAGAGATATTCGGATAGTAGAAAGTT
TCTCCTTGTGTCTGGGACTGGGACATAAGTTCGAATAAGGGAGTCTACTG
TCTACTGTATAAAAATGTCAAATTTTGTTGCTTTTTATTTTGTAGATTTG
CACCAAGCTGTGTTATCAAAAGAAGAGATGACGGTTTTCCAAGTCAGTGG
TGCTCTTCAATCGCACGAGAGTTACATCCGCATCATGACAGCCATCAATC
ATGCCGGACTTGAGCTCTACTTCAAAGCGTTCCATCACAGGGACGAACTA
CCCGGTGGTCTTGGTCTTCCAACAGAACCGGAAAAACTTTACAAGCATCT
ACAAAAACATCAATCAGAATTTGACGACCTTCGCTCCAAAGGACAAATCA
CTGAAAGAGAGTATCTAACCATTTTCCCAGCTGGCAAGAAAGAGACTTAT
TCTCAGGAATTCTCATTCCCGCTTTTCCAAAAATTGTTACAAATGTTTGA
CCGAGCAGGACTTGATGCGGAAACAGCAAACTCGGATGACGAGCGAAACG
TATTTTTGCAAGAAATGTCGAAATTTGAATACATATTGAAAGATAAGAAA
CTGGTCAAAAAGATTAACAATTCTGATGAGACTTTCAATGAAATTTGGGA
TGACGTCATTCAGATCTTGAAAAATGTCAAATATGATATAACACGAATCG
AATCCTTACGAACAAGCGATCTAGAAGAAAATAATAAATTCCGATTCGCT
CTCTTAAAATCCGAAGTCAACGCTTTATTGTGGGAATGTGATGATTGTTT
CAAGACTGTCAAAATGAACCATCTAGCCTTGGATCGCCTCAAAGGGAACT
TCCAGGCTGCACTCTCTGAAGTCAAAACAGAAAATAACAACGCTAAAACA
GCTAACGAGTTAAAAGAACTGAATACAGTCACAGATGAACTTCAAAAATC
TGAAAATAAAATCATGGTTCAAAAACAACAGCTAAACGAAATTGTTCCAA
ATATTAAATTTTGGCGGGAAAAGAACATTGAAGGTGACGTCATCATTTGT
GACGAGAACATTTCGAAATTGAGACATGAAGTAAATGAACAGACCAGACG
AGTCGGTGATTTGTTCAACACCGTATCTTTCGATATCATTCACCTGAAGG
AGCGAGCATACAGTGCGACTGGAGAAGCTAAAAACATCGGACTTCCTTTA
CATAAATCGCATTGAGTTTTGCGACTGTTTCAGATTTTTTTTTTTGTACA
TATTATTAAGGTCTATTATCTTTATATTTATTATTTTAATGCAAGTTTTA
TTTTTAATTTGTTCTAGGTCTTTCAATTGATTATTCCGAAATTGATGCTG
AATATTTTGGGAACTTTTTTGGATTGACCGGTTGAACCTTTAGTCTTTTG
CTTTATTGATTTCAGAAAAAAATAAAAGATAGAGAATTTTGTATAGATTT
CACTGGCGTGTCATTTCATTGAGTTACTTTAAACAACACTTCTACGCGTT
TTTTTTTATTAGAACCTAGTTTATAAGAACATATAGGCTGAAATTCGTCG
AAAAATTAAGAACATCTTAAGAACATGCCCAGCCTCAGTTTGGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002949XLOC_002949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005181-exon-sc0000051-1575043694:111400..111561TCONS_00005181-exon-sc0000051-1575043694:111400..111561Clytia hemisphaericaexon
TCONS_00005181-exon-sc0000051-1575043694:108262..109716TCONS_00005181-exon-sc0000051-1575043694:108262..109716Clytia hemisphaericaexon
TCONS_00005181-exon-sc0000051-1510915933:111400..111561TCONS_00005181-exon-sc0000051-1510915933:111400..111561Clytia hemisphaericaexon
TCONS_00005181-exon-sc0000051-1510915933:108262..109716TCONS_00005181-exon-sc0000051-1510915933:108262..109716Clytia hemisphaericaexon
TCONS_00005181-exon-sc0000051-1491911889:111400..111561TCONS_00005181-exon-sc0000051-1491911889:111400..111561Clytia hemisphaericaexon
TCONS_00005181-exon-sc0000051-1491911889:108262..109716TCONS_00005181-exon-sc0000051-1491911889:108262..109716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:108262..111561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03969e-09	0	0	0	3.67178	0.0322412	0.0355755	4.35962	0.708808	1.08573	0	2.15633	10.4441	7.81786	5.62024	5.13138	3.36594	1.46278	3.71787	8.59909	6.16247	8.04144	1.29151	2.17264	5.19814	3.56214	49.7478	46.6253	23.9786	24.6508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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