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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005177 ID=TCONS_00005177|Name=TCONS_00005177|organism=Clytia hemisphaerica|type=transcript|length=2285bpRun BLAST on NCBI protein sequence of TCONS_00005177-protein >TCONS_00005177-protein ID=TCONS_00005177-protein|Name=TCONS_00005177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp MHLKNNITQTGKRAICKSTKDAIQQSYVIELQRLIHQGAEDIDVCDQKFKRun BLAST on NCBI transcript from alignment at sc0000051:83873..99418- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005177 ID=TCONS_00005177|Name=TCONS_00005177|organism=Clytia hemisphaerica|type=transcript|length=15546bp|location=Sequence derived from alignment at sc0000051:83873..99418- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:83873..99418- >TCONS_00005177 ID=TCONS_00005177|Name=TCONS_00005177|organism=Clytia hemisphaerica|type=CDS|length=33660bp|location=Sequence derived from alignment at sc0000051:83873..99418- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005177 vs. Swiss-Prot (Human)
Match: ANR42 (Ankyrin repeat domain-containing protein 42 OS=Homo sapiens GN=ANKRD42 PE=2 SV=2) HSP 1 Score: 298.516 bits (763), Expect = 1.095e-92 Identity = 150/327 (45.87%), Postives = 208/327 (63.61%), Query Frame = 1
Query: 154 QKFKFTPLHWAAHFGSLE------CMHWLLWHGANINARSKDGWSAAHIAAIRGRSKCMQALAANGADLNLVDSREKTPTHLASSHGNSQTLQEILRKGINIEARDNMGWTAAHTAAYHGRTACFQLLVKWGCDITSLDPNGNSLAHLAASEGHVLCLKLIIATCKNINAIIKARNDMGEKPIDCAIQYYKKECVDYLKVIEYDVDNPETAEDLSYPAHTSAFKGDLAYLQMIVETGVASINERDDRNSTPLHKAAGCGQIEVVKWLIDKGADTSLLNRAGETVKDVALRFGKLACAKLLGHDVEDV--FEMEDESTESETFRKEFI 1110
+K F +H A G ++ C+HWLLWHGA+I + GW+A+HIAAIRG+ C+QAL NGA+L D R TP HLA++HG+S TLQ +LR G++ D W H AA+HGR C QLLVKWGC I +D NGN HLAA EGH+ C K +++ + ++KA ND GE +D A +++K+ + +++ EY+ + E E L++P H +AFKGDL L+ +VE GV +INER D STP+HKAAG G IE ++WLI GAD+++ N+AGE DVA RF LA KLL E++ ++++DE+ E K FI
Sbjct: 23 KKVHFGSIHDAVRAGDVKQLSEIVCLHWLLWHGADITHVTTRGWTASHIAAIRGQDACVQALIMNGANLTAQDDRGCTPLHLAATHGHSFTLQIMLRSGVDPSVTDKREWRPVHYAAFHGRLGCLQLLVKWGCSIEDVDYNGNLPVHLAAMEGHLHCFKFLVSRMSSATQVLKAFNDNGENVLDLAQRFFKQNILQFIQGAEYEGKDLEDQETLAFPGHVAAFKGDLGMLKKLVEDGVININERADNGSTPMHKAAGQGHIECLQWLIKMGADSNITNKAGERPSDVAKRFAHLAAVKLL----EELQKYDIDDENEIDENDVKYFI 345 The following BLAST results are available for this feature:
BLAST of TCONS_00005177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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