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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005175 ID=TCONS_00005175|Name=TCONS_00005175|organism=Clytia hemisphaerica|type=transcript|length=1789bp
TGAAAAAGGCACAAAATGatttcaaaaaaggattacTAATGCCTGCACTG
GAACCACATGATCAAATGGAGCCAATCACAGCGCTGGACGAAGATCAACA
AATTCCTTCACCTACCAAAAGTGAGCAAGACACCAACAACACCGTTGcta
ataacaacaacaacaatagcAATACAACCAATGGTGAATCGTATAACGGC
ATCACGAAATATAATCCAAGCACGCCCTCCGATAATGGGTCAACGAACGA
CGGGTTTAGCCCGAGACCGAATTACGAGCAAAGTCAACAACCAGTCTATA
TGTCAACTTTGAATCACACCCAACCAGCTTATCGCGGCAACTTTCATCGC
AAAATCGAGGAAAACAACAATACACATCACTCCCCACGAAGTAATGGCAA
TTTCCATAGACCTTATCAGACCTCGCCACCGTCTATTGACAAGGCGCCTA
GCTTTGTTGTTCGCTCGCTTTCCGAGAGCAGTAAATCGACCACCCCACCC
TCGCCCTCCACCTCTCCGCCCGAGGATAAACATGTTTGGTCAAAAGGCGA
AATCGAACTTTTATTAGACCTCTACGAATCTTACAAAGACCAACTGAAGG
ATCCCCGAGTTCGAAAAACTAAAGTTTGGGACGATGTGGCGCGTATTATT
CGAGAGAAAGTAGATTCCGATGTGACGGGGTGCCAATGTAACCAAAAGTT
TCGAAACTTGAAAGCTGACTTTCAAAAGGTTTTGGATCATAATGGCAGAC
CAGGAAATTTCAAACGCGTCTGTAAATATTATGACCGTTTAGCAAACATT
TTGAGTTATCAAGCACAAGGACGAGGATATCCTGGCTTACCCCACCCTTA
CCCGCCCTTGGGCGTTCATGAAAACGCCATCAAGATGGAGCAACGTCACC
GAGAGTTATTTTTCGAGAACGGGCGTTCGAATTCGTCACCAAAACCGAAT
ATGTTGAAACGTAAATTATCTCAAGAAAACCTCATGATGAACGGACACCA
CCCGATGAATAACGGACATGTGAACGGACATGTGAACGGGCACCCGCCCC
CATCACATGAGATGTTATACCCCATTGACAATAAACGCCCTAAAACTCAA
TGTACGTGTGATTGTTCACATGAAGTCACCACGTTGCGAGATACAGTTGA
ACGCATCAATAATTACATTGTCGCGCGGGCCGCTCACGAAGAAGAGCGTA
TGCGCCGCGTAGAGGAAATGCATCGAGAGAAACTTGTAGCGCTCAGTCGC
TTTGTTGATATCTTCAAAGACTTTGTTATGAAAATgacgtaaatataaaa
actctGTCTAAGATTTGTCTTTTTTTGTCCGTACCTGACAACTGTTCTTT
TTATACTGATTCTGTTTTTTTTGAGACTGAGAAAAATTTGGTACGTTTTA
AGTATTCGTTTCAGGACTTTTTGTTGCCCAGAAATCTTCTTTTGTTGATA
TAGTGTCCGAAAATAGAAGTTTGTCCGGAGTTGTTCAataagaagttttt
tttcttttaacacAATTATTTAATactttaaattctttttgtaatatATT
GTAGAATTTTAacacccaaaaatttttttgtttattttattttattaaat
ttttctgttttttgaaaataatattgatACATTAACAGAGAGCTAAAAca
cattttattgaaaagaataatattttttgtttattttatggTAAATTTAA
CAATATatattaaaatttagaatttttctcattcccaaacatctttttat
tttgacgaaaaaagtaaaaaaataaagcgagaaaatgaa Run BLAST on NCBI protein sequence of Myb transcription factor >TCONS_00005175-protein ID=TCONS_00005175-protein|Name=Myb transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=429bp
KKAQNDFKKGLLMPALEPHDQMEPITALDEDQQIPSPTKSEQDTNNTVAN
NNNNNSNTTNGESYNGITKYNPSTPSDNGSTNDGFSPRPNYEQSQQPVYM
STLNHTQPAYRGNFHRKIEENNNTHHSPRSNGNFHRPYQTSPPSIDKAPS
FVVRSLSESSKSTTPPSPSTSPPEDKHVWSKGEIELLLDLYESYKDQLKD
PRVRKTKVWDDVARIIREKVDSDVTGCQCNQKFRNLKADFQKVLDHNGRP
GNFKRVCKYYDRLANILSYQAQGRGYPGLPHPYPPLGVHENAIKMEQRHR
ELFFENGRSNSSPKPNMLKRKLSQENLMMNGHHPMNNGHVNGHVNGHPPP
SHEMLYPIDNKRPKTQCTCDCSHEVTTLRDTVERINNYIVARAAHEEERM
RRVEEMHREKLVALSRFVDIFKDFVMKMT Run BLAST on NCBI transcript from alignment at sc0000051:63022..67697- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005175 ID=TCONS_00005175|Name=TCONS_00005175|organism=Clytia hemisphaerica|type=transcript|length=4676bp|location=Sequence derived from alignment at sc0000051:63022..67697- (Clytia hemisphaerica)
TGAAAAAGGCACAAAATGGTAAGAGGAGATAATTATAATTATTATATCTA
TTATTCGTATTTGCCGGCGCTCGCTTCTTGAATGCACTGATGACTCATTC
GGAGGGGGCTGTGTTTGAATAATTTGGTTCATGCTTTGATTCATTGAAAC
TTCTTTGTTTTGCTTCGATTCTGACGTCATTGGTAATTCACATTTCTGCA
GCTAAGTCAACGAACCCAATACAACATTTTAAAGGGATTTTATTCACGCG
CACGCCACGCCTAAGTGCGAAGTACGCATATTGTGCAAATATTAAAAACT
AAGTTCGAGCGTTAGGCTTTTTGCAACAAAAGTTATCTCTTATTGTTGAA
AAGAAATTTAGGAAACACGTTTTCAACAAATTTCTTTTGTTAGGTCTGTT
TTATTTGTCTTGTTATCGAGGAACAAATATTTTGGAAAATGTTGACCCAA
AACCCTATGGGGTTCTATACATTCGGATGACGTCACAAAATCCTTTCCAG
TACCCTTTGGGTAGACTATTGAACACTCAACGTAATCGCGTTTCCCTCCA
TTTTGAATTTCATAAACATTGAATTTAGATACAAAAGCGGCTTACAAACG
TAGCAAAAGCATGAGTGGAAAAGAATGCTGTAAAAAACTTTCTTTTAATA
CTGTACATACTCTTGGATTCGATNGAAAGAATGCTGTAAAAAACTTTCTT
TCGATACTGTACATATACTCTCGGATTCGATTCCTGCTATGCTGAAATTC
AACAAACAATTCAAATCAGAGAATGATGTTCTTAATTTTCACAAGAACAA
TTCAAGGCTCCACCTCTCATATAGCGAGGAACAAACACTCGTTTGTAAAG
AGTCGGTTTTACCGAGAACTAATTATCGACGTCTACCGACCAACGACAAT
TGTTGTTTAATGACGGAATCGATAATAAGGGGGTAGCACAAACAAAGAGA
AAGTCTGCCAATTTTCTGTCGGAAAGGTTGAAACAAAAGTTGCAAAAAGA
TCAAAACAAGAACAAGTTGGAGCAAACAGAACATTCGTTAAGCAGGATGG
GAAGGCTATGTTTCATGTTGTCTTGTATATGTTGAGAAAGGTCTTTTCGA
TGTTTTGATTATCGGCTGGATTGAGAGTGAAATCATTTTTGATTGTCAAC
CTTTCTAGTGAGTGATGTGACTTTTTGCCGGACACCGAAATTCTTATTGA
AAAGTTTAGCAGCGATTAGGAAATACTTAAGACTTTAGATATANGTGATT
GTCAACCTTTTAGTGAGTGATGTGACTTTTTGCCGGACACCGAAATTCTC
ATTGAAAAGTTTAGCAGCGATTAGGAAATACTTAAGACTTTAGATATATT
TGACAGACAAGTCTTAAGAAGCTCTCGAGATTCAGAATACGCAAATCTTA
ATCATCTCCGACTATGCTTTCTTAAAGCAATTTTCTGTGATTAGAAAATC
CCAAGCTTAAAACAGACAATTATTTTAAATCTCCGACATCAAGTGCCGCT
GATTAAAAAAATATCAGAAAAATCTCAATGACAAATCTGAAGTTTAGAAA
ATTGTGTAATAAATTGTTTTGATTGTTAGGAGAATAATCCTGAAATGCTG
CATTTTGAAACACCTGGAGCTCATTCTTAACTATCTAAAGTTATCTTTAA
CCTGAAGCCTTCACAACTAGAGCGTTTACCGGAGAACGCTTGAGTTTTGG
AGTAATATCAAAAAGTCAGAAATCATTTTGTGAGGGGGTGGTTTGATTAC
GAAAATTTTCACACGGCCGTCAAGTTACGGATAGTTCATTTGTTTAGCAG
TAATTAAAAAGGTTTCCTGCAGACGGACGGACGAGCGAGCGAGCGAATGA
GAGTTGATGATTGACCGGCCAAAAGTTTCGTTTTGATTTTGTAACGAATT
ATAGGTTTGTGTTTATTCCGGTCCTCTATTTTGATGTTGGAGAGAAGAGA
AGATGCCGCTTCAAACAATCTTAACATGATTCGACAAATAGAGCATTGCT
CTCCTCCCTTGAGATGAAATAATCAATCACTTTATTAGAAAGTCTCAAGG
TACACGTATTTTTTTATATAAGGAACCTTAACTTTGCTCTGAGCCTGGAG
TTCCTTATTTTTACAGAAAATTTCAGCCTCGAAGTTCCTTTTGAGTTCCT
TATTTACATAGCTAGTTCAAGTGAAAACTCTTACTTTTACTGTTCCTTAG
AACTTGTTTTCTTATTCTTAGCCTGAGCAGTTCCTTAACAATTNNCTTTC
AGGCAGCCGACTTGTGCATCAGTTCAACCTCTTCTCAGTTTTCAAAGTGA
AGATCTGTCTATTGTTTTGAAGTCTTCTAATCTACAGCATATGATTTTGA
AATCAGTTCGCAGTAAAATACGAGGCTTTGAAATTCGAGCCTGATTTGTT
CTTATAGAAAAATTTGGAAATGGTATTTGTTCCGCAGGAGAGACAGGGTG
TAGGAGAGCTACACATCCCACGTAACGGAGAGAGAGAGAGAGAGAGAGGG
TGAGGGAGGGACAAACCGTTCTATAACGGACCAGAAGGACCAACACAAAA
ACCTTTCTGGCTGATTTAATCCCTTTAAGTAAGAAGAAAGAAAGAAAGAG
AAGAGAAAAATAGATTTCTCTTTTAAACAATAGATGGTCTACATAATGCA
AAAACAACAATAAATAAACACAATCAAAACATACAACAAAATATAAACCT
CTTTAAACTCTCTTTCACTTTCATACAACACAGTTATAGATAGCCTCCTT
CTGCAATAGGTAGGGGCTTATGGACTAGTTACTTAGTATCTTGGGCCTTA
CTTTAAGAATAGAGTATCATGGATCTGAAATCGAAATATTCAAAGAATCC
TAAATAAGACGTAATAACTCACAGAGCGCTAATAAATTCTTTTTTCTTTC
TACAGATTTCAAAAAAGGATTACTAATGCCTGCACTGGAACCACATGATC
AAATGGAGCCAATCACAGCGCTGGACGAAGATCAACAAATTCCTTCACCT
ACCAAAAGTGAGCAAGACACCAACAACACCGTTGCTAATAACAACAACAA
CAATAGCAATACAACCAATGGTGAATCGTATAACGGCATCACGAAATATA
ATCCAAGCACGCCCTCCGATAATGGGTCAACGAACGACGGGTTTAGCCCG
AGACCGAATTACGAGCAAAGTCAACAACCAGTCTATATGTCAACTTTGAA
TCACACCCAACCAGCTTATCGCGGCAACTTTCATCGCAAAATCGAGGAAA
ACAACAATACACATCACTCCCCACGAAGTAATGGCAATTTCCATAGACCT
TATCAGACCTCGCCACCGTCTATTGACAAGGCGCCTAGCTTTGTTGTTCG
CTCGCTTTCCGAGAGCAGTAAATCGACCACCCCACCCTCGCCCTCCACCT
CTCCGCCCGAGGATAAACATGTTTGGTCAAAAGGCGAAATCGAACTTTTA
TTAGACCTCTACGAATCTTACAAAGACCAACTGAAGGATCCCCGAGTTCG
AAAAACTAAAGTTTGGGACGATGTGGCGCGTATTATTCGAGAGAAAGTAG
ATTCCGATGTGACGGGGTGCCAATGTAACCAAAAGTTTCGAAACTTGAAA
GCTGACTTTCAAAAGGTTTTGGATCATAATGGCAGACCAGGAAATTTCAA
ACGCGTCTGTAAATATTATGACCGTTTAGCAAACATTTTGAGTTATCAAG
CACAAGGACGAGGATATCCTGGCTTACCCCACCCTTACCCGCCCTTGGGC
GTTCATGAAAACGCCATCAAGATGGAGCAACGTCACCGAGAGTTATTTTT
CGAGAACGGGCGTTCGAATTCGTCACCAAAACCGAATATGTTGAAACGTA
AATTATCTCAAGAAAACCTCATGATGAACGGACACCACCCGATGAATAAC
GGACATGTGAACGGACATGTGAACGGGCACCCGCCCCCATCACATGAGAT
GTTATACCCCATTGACAATAAACGCCCTAAAACTCAATGTACGTGTGATT
GTTCACATGAAGTCACCACGTTGCGAGATACAGTTGAACGCATCAATAAT
TACATTGTCGCGCGGGCCGCTCACGAAGAAGAGCGTATGCGCCGCGTAGA
GGAAATGCATCGAGAGAAACTTGTAGCGCTCAGTCGCTTTGTTGATATCT
TCAAAGACTTTGTTATGAAAATGACGTAAATATAAAAACTCTGTCTAAGA
TTTGTCTTTTTTTGTCCGTACCTGACAACTGTTCTTTTTATACTGATTCT
GTTTTTTTTGAGACTGAGAAAAATTTGGTACGTTTTAAGTATTCGTTTCA
GGACTTTTTGTTGCCCAGAAATCTTCTTTTGTTGATATAGTGTCCGAAAA
TAGAAGTTTGTCCGGAGTTGTTCAATAAGAAGTTTTTTTTCTTTTAACAC
AATTATTTAATACTTTAAATTCTTTTTGTAATATATTGTAGAATTTTAAC
ACCCAAAAATTTTTTTGTTTATTTTATTTTATTAAATTTTTCTGTTTTTT
GAAAATAATATTGATACATTAACAGAGAGCTAAAACACATTTTATTGAAA
AGAATAATATTTTTTGTTTATTTTATGGTAAATTTAACAATATATATTAA
AATTTAGAATTTTTCTCATTCCCAAACATCTTTTTATTTTGACGAAAAAA
GTAAAAAAATAAAGCGAGAAAATGAA Coding sequence (CDS) from alignment at sc0000051:63022..67697- >TCONS_00005175 ID=TCONS_00005175|Name=TCONS_00005175|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at sc0000051:63022..67697- (Clytia hemisphaerica)
ATTTCAAAAAAGGATTACTAATGCCTGCACTGGAACCACATGATCAAATG
GAGCCAATCACAGCGCTGGACGAAGATCAACAAATTCCTTCACCTACCAA
AAGTGAGCAAGACACCAACAACACCGTTGCTAATAACAACAACAACAATA
GCAATACAACCAATGGTGAATCGTATAACGGCATCACGAAATATAATCCA
AGCACGCCCTCCGATAATGGGTCAACGAACGACGGGTTTAGCCCGAGACC
GAATTACGAGCAAAGTCAACAACCAGTCTATATGTCAACTTTGAATCACA
CCCAACCAGCTTATCGCGGCAACTTTCATCGCAAAATCGAGGAAAACAAC
AATACACATCACTCCCCACGAAGTAATGGCAATTTCCATAGACCTTATCA
GACCTCGCCACCGTCTATTGACAAGGCGCCTAGCTTTGTTGTTCGCTCGC
TTTCCGAGAGCAGTAAATCGACCACCCCACCCTCGCCCTCCACCTCTCCG
CCCGAGGATAAACATGTTTGGTCAAAAGGCGAAATCGAACTTTTATTAGA
CCTCTACGAATCTTACAAAGACCAACTGAAGGATCCCCGAGTTCGAAAAA
CTAAAGTTTGGGACGATGTGGCGCGTATTATTCGAGAGAAAGTAGATTCC
GATGTGACGGGGTGCCAATGTAACCAAAAGTTTCGAAACTTGAAAGCTGA
CTTTCAAAAGGTTTTGGATCATAATGGCAGACCAGGAAATTTCAAACGCG
TCTGTAAATATTATGACCGTTTAGCAAACATTTTGAGTTATCAAGCACAA
GGACGAGGATATCCTGGCTTACCCCACCCTTACCCGCCCTTGGGCGTTCA
TGAAAACGCCATCAAGATGGAGCAACGTCACCGAGAGTTATTTTTCGAGA
ACGGGCGTTCGAATTCGTCACCAAAACCGAATATGTTGAAACGTAAATTA
TCTCAAGAAAACCTCATGATGAACGGACACCACCCGATGAATAACGGACA
TGTGAACGGACATGTGAACGGGCACCCGCCCCCATCACATGAGATGTTAT
ACCCCATTGACAATAAACGCCCTAAAACTCAATGTACGTGTGATTGTTCA
CATGAAGTCACCACGTTGCGAGATACAGTTGAACGCATCAATAATTACAT
TGTCGCGCGGGCCGCTCACGAAGAAGAGCGTATGCGCCGCGTAGAGGAAA
TGCATCGAGAGAAACTTGTAGCGCTCAGTCGCTTTGTTGATATCTTCAAA
GACTTTGTTATGAAAATGACGTAAAAAAAGGCACAAAATGATTTCAAAAA
AGGATTACTAATGCCTGCACTGGAACCACATGATCAAATGGAGCCAATCA
CAGCGCTGGACGAAGATCAACAAATTCCTTCACCTACCAAAAGTGAGCAA
GACACCAACAACACCGTTGCTAATAACAACAACAACAATAGCAATACAAC
CAATGGTGAATCGTATAACGGCATCACGAAATATAATCCAAGCACGCCCT
CCGATAATGGGTCAACGAACGACGGGTTTAGCCCGAGACCGAATTACGAG
CAAAGTCAACAACCAGTCTATATGTCAACTTTGAATCACACCCAACCAGC
TTATCGCGGCAACTTTCATCGCAAAATCGAGGAAAACAACAATACACATC
ACTCCCCACGAAGTAATGGCAATTTCCATAGACCTTATCAGACCTCGCCA
CCGTCTATTGACAAGGCGCCTAGCTTTGTTGTTCGCTCGCTTTCCGAGAG
CAGTAAATCGACCACCCCACCCTCGCCCTCCACCTCTCCGCCCGAGGATA
AACATGTTTGGTCAAAAGGCGAAATCGAACTTTTATTAGACCTCTACGAA
TCTTACAAAGACCAACTGAAGGATCCCCGAGTTCGAAAAACTAAAGTTTG
GGACGATGTGGCGCGTATTATTCGAGAGAAAGTAGATTCCGATGTGACGG
GGTGCCAATGTAACCAAAAGTTTCGAAACTTGAAAGCTGACTTTCAAAAG
GTTTTGGATCATAATGGCAGACCAGGAAATTTCAAACGCGTCTGTAAATA
TTATGACCGTTTAGCAAACATTTTGAGTTATCAAGCACAAGGACGAGGAT
ATCCTGGCTTACCCCACCCTTACCCGCCCTTGGGCGTTCATGAAAACGCC
ATCAAGATGGAGCAACGTCACCGAGAGTTATTTTTCGAGAACGGGCGTTC
GAATTCGTCACCAAAACCGAATATGTTGAAACGTAAATTATCTCAAGAAA
ACCTCATGATGAACGGACACCACCCGATGAATAACGGACATGTGAACGGA
CATGTGAACGGGCACCCGCCCCCATCACATGAGATGTTATACCCCATTGA
CAATAAACGCCCTAAAACTCAATGTACGTGTGATTGTTCACATGAAGTCA
CCACGTTGCGAGATACAGTTGAACGCATCAATAATTACATTGTCGCGCGG
GCCGCTCACGAAGAAGAGCGTATGCGCCGCGTAGAGGAAATGCATCGAGA
GAAACTTGTAGCGCTCAGTCGCTTTGTTGATATCTTCAAAGACTTTGTTA
TGAAAATGACGTAAAAAAAGGCACAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005175-exon-sc0000051-1575043694:67680..67697 | TCONS_00005175-exon-sc0000051-1575043694:67680..67697 | Clytia hemisphaerica | exon |
| TCONS_00005175-exon-sc0000051-1575043694:63022..64792 | TCONS_00005175-exon-sc0000051-1575043694:63022..64792 | Clytia hemisphaerica | exon |
| TCONS_00005175-exon-sc0000051-1510915933:67680..67697 | TCONS_00005175-exon-sc0000051-1510915933:67680..67697 | Clytia hemisphaerica | exon |
| TCONS_00005175-exon-sc0000051-1510915933:63022..64792 | TCONS_00005175-exon-sc0000051-1510915933:63022..64792 | Clytia hemisphaerica | exon |
| TCONS_00005175-exon-sc0000051-1491911889:67680..67697 | TCONS_00005175-exon-sc0000051-1491911889:67680..67697 | Clytia hemisphaerica | exon |
| TCONS_00005175-exon-sc0000051-1491911889:63022..64792 | TCONS_00005175-exon-sc0000051-1491911889:63022..64792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:63022..67697 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR017877 | Myb-like_dom |
Blast
The following BLAST results are available for this feature:
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