|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005173 ID=TCONS_00005173|Name=TCONS_00005173|organism=Clytia hemisphaerica|type=transcript|length=559bp
ttttttttgtcattcaacCGTGTTGTGGCAACATCTCTCCTGCTTCCAAG
TACCATGAACAATAAGGATTATAATGTTTGAAAGTGTCCTGCGCTGGTCT
GCTCAATCAACCTTAAAGACATGGGCAACAGAAGATCAATACTGAGACCC
AATTTTAGGTGAGTTCTCTGTCACTTTCTCGGTTTGAAGTGGAAGATAAC
GCTTGAGTGATTCTAAATAATCAcactttttccaaaaacataCCTGACCT
TTACTATGAGCATACTGAGGCCACTTTTTTCATCTACTCTTCAAGCCCTA
CCAGTTGGTCATATTAGATATGAGAATTTCTGACCTCCAAATTTTCAACA
TCAACCCTGTGGATTTCTAAATCCTACGTATCAGTGAGAATAAAAAACAC
TAAGAGAATTGTTCTATTGAAAAGTGGTGCGACAGCAAGTCATCGCCTGG
TCTATTTCCTCAAGATTAGTCAGTCATAGTCCAAACCCCTTCAAAAGAGA
CTTTAAAGTGCAAAAGAGGGGGGTCTGAGAGAAAAAGTTTCATAGAAAGG
AGATGCAAC Run BLAST on NCBI transcript from alignment at sc0000051:27122..29395- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005173 ID=TCONS_00005173|Name=TCONS_00005173|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at sc0000051:27122..29395- (Clytia hemisphaerica)
TTTTTTTTGTCATTCAACCGTGTTGTGGCAACATCTCTCCTGCTTCCAAG
TACCATGAACAATAAGGATTATAATGTTTGAAAGGTATGTTGGTTTTTCC
TTGCTGTCAAAATAGATAGCACTTAGACCTTTTTATTTATAAAACTTCGC
CATCTTTATTTACCCCTGCGGACGACATAGTTTTCTGTAAAAATCAGGGC
CTTGGAATTTCCTTCCAGACCCCTGCGCTGAGGATGAGATGTGATTTATG
GATTACTTATTGATCCGGATTGGGAGATCGATCAAAGATTGATACTCAAG
ATTTTATAGGACCGTGCCGACGCACCAGACTGTCTGGTGTATTTGTCCGG
TGGCAAAAAGTATCCTTTCGCTACACCGGACGCAATAAGTCCAGTGTCAG
TCCGGTGCTACATACAGGGAATTTTGGACGCCGGACATTTATGAAACAAA
AAATTAAGAAACACCGTACGCACCGGACTGGCCAGTGTTTTGATTGTCCG
GTGGGAAATAATATCCTTCTCCGACACCGGACATCCGACTTCCTTAAATC
ATTTAGACTTAAATTCTGTGTCGTCTACCCCGCCCCCCCCCCCCCCTTTA
CAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGGGGTGGGGGGAACCCAAATTTG
GACATTTTCAGTGCACAAATACAATGTGGACAGCCCCAATAGTGGTTTAA
ATTTTCCTATCTAGGTGGCAAGCTAAAATATATTCCGTTCACATCGCCCA
ACTGACTCACCTTCAAAACATTAATCCCGAGTCGTACAAGTCGGCAAAAT
GTCGGAAAAAGTTTTTGATAGCTAAGCACTTCTTTGAATCATCATTCGCT
ACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAGAACGTGGCAATAGAG
CAACAGTACTCTGAGGCCAGAATTCCCTCTCACCAAACCATTTTCAAAAA
GTGACCCAGGAGGGGAGTGGGTTTGAGTCTGTCCTAAAATTTAAGAACCT
TTGTTTTAATCCCAGATGCGTCCAAAAAAGCAGCTTAGCACAAAACAAGT
CAGGAGAAGTTTTAACTTAGGTGAGAACTGACTTGGGTGTAATCAGTGAA
AAATACTGTTATTTTCAGACAGATAATAATCTTTTTGTTTTCTTTACAGT
GTCCTGCGCTGGTCTGCTCAATCAACCTTAAAGACATGGGCAACAGAAGA
TCAATACTGAGACCCAATTTTAGGTGAGTTCTCTGTCACTTTCTCGGTTT
GAAGTGGAAGATAACGCTTGAGTGATTCTAAATAATCACACTTTTTCCAA
AAACATACCTGACCTTTACTATGAGCATACTGAGGCCACTTTTTTCATCT
ACTCTTCAAGCCCTACCAGTTGGTCATATTAGATATGAGAATTTCTGACC
TCCAAATTTTCAACATCAACCCTGTGGATTTCTAAATCCTACGTATCAGT
GAGAATAAAAAACACTAAGAGAATTGTTCTATTGAAAAGTGGTGCGACAG
CAAGTCATCGCCTGGTCTATTTCCTCAAGATTAGTCAGTCATAGTCCAAA
CCCCTTCAAAAGAGACTTTAAAGTGCAAAAGAGGGGGGTCTGAGAGAAAA
AGTTTCATAGAAAGGAGATGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005173-exon-sc0000051-1575043694:29312..29395 | TCONS_00005173-exon-sc0000051-1575043694:29312..29395 | Clytia hemisphaerica | exon |
| TCONS_00005173-exon-sc0000051-1575043694:27122..27596 | TCONS_00005173-exon-sc0000051-1575043694:27122..27596 | Clytia hemisphaerica | exon |
| TCONS_00005173-exon-sc0000051-1510915933:29312..29395 | TCONS_00005173-exon-sc0000051-1510915933:29312..29395 | Clytia hemisphaerica | exon |
| TCONS_00005173-exon-sc0000051-1510915933:27122..27596 | TCONS_00005173-exon-sc0000051-1510915933:27122..27596 | Clytia hemisphaerica | exon |
| TCONS_00005173-exon-sc0000051-1491911889:29312..29395 | TCONS_00005173-exon-sc0000051-1491911889:29312..29395 | Clytia hemisphaerica | exon |
| TCONS_00005173-exon-sc0000051-1491911889:27122..27596 | TCONS_00005173-exon-sc0000051-1491911889:27122..27596 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:27122..29395 - |
Blast
The following BLAST results are available for this feature:
|
