|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005172 ID=TCONS_00005172|Name=TCONS_00005172|organism=Clytia hemisphaerica|type=transcript|length=679bp
NttttttttgtcattcaacCGTGTTGTGGCAACATCTCTCCTGCTTCCAA
GTACCATGAACAATAAGGATTATAATGTTTGAAAGTGTCCTGCGCTGGTC
TGCTCAATCAACCTTAAAGACATGGGCAACAGAAGATCAATACTGAGACC
CAATTTTAGgTGTCAAtgcatcatcatcatcatcaggtGGAGTGCAACAA
TAGTATAAATCAGCGAACTTGCATCTATTCAGCTTTCACGGATTTACTTT
GAAAACTCAGCTAAACTTGAATCTATTCAGTTTATACGGATTAACTCGAC
AAACTCGTTTAATTGTTACATTGATTTATTCGGAAAACTCTGCTAAACTT
GAATTTACTCGGCATCTACTCGGTTTACTCGGCTCAGATTTAAATAGCGA
ATTCAACCCATCTTGCAGCTTtctcagccaatcagaattccTTGAGTTTG
CTAggtttaaaagaaataaatacattGATATTGTTATTTAACTCTCATTT
CTTGTATCTGTTCCCTTCTAAATTTTCCAAAGCATGATTTTTGCGATCCC
ACTGTGCGAAATTTGTGCGAGTAAGGATTGAAACTCGGCCTTCAAGGAAG
CGAAAACAAACTAGATATGACAAAGCCCTGTTTATTGGTTTTTAGActct
gggccttcatgcccttggGCCTCTTGTTT Run BLAST on NCBI transcript from alignment at sc0000051:26417..29396- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005172 ID=TCONS_00005172|Name=TCONS_00005172|organism=Clytia hemisphaerica|type=transcript|length=2980bp|location=Sequence derived from alignment at sc0000051:26417..29396- (Clytia hemisphaerica)
NTTTTTTTTGTCATTCAACCGTGTTGTGGCAACATCTCTCCTGCTTCCAA
GTACCATGAACAATAAGGATTATAATGTTTGAAAGGTATGTTGGTTTTTC
CTTGCTGTCAAAATAGATAGCACTTAGACCTTTTTATTTATAAAACTTCG
CCATCTTTATTTACCCCTGCGGACGACATAGTTTTCTGTAAAAATCAGGG
CCTTGGAATTTCCTTCCAGACCCCTGCGCTGAGGATGAGATGTGATTTAT
GGATTACTTATTGATCCGGATTGGGAGATCGATCAAAGATTGATACTCAA
GATTTTATAGGACCGTGCCGACGCACCAGACTGTCTGGTGTATTTGTCCG
GTGGCAAAAAGTATCCTTTCGCTACACCGGACGCAATAAGTCCAGTGTCA
GTCCGGTGCTACATACAGGGAATTTTGGACGCCGGACATTTATGAAACAA
AAAATTAAGAAACACCGTACGCACCGGACTGGCCAGTGTTTTGATTGTCC
GGTGGGAAATAATATCCTTCTCCGACACCGGACATCCGACTTCCTTAAAT
CATTTAGACTTAAATTCTGTGTCGTCTACCCCGCCCCCCCCCCCCCCTTT
ACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGGTGGGGGGAACCCAAATTT
GGACATTTTCAGTGCACAAATACAATGTGGACAGCCCCAATAGTGGTTTA
AATTTTCCTATCTAGGTGGCAAGCTAAAATATATTCCGTTCACATCGCCC
AACTGACTCACCTTCAAAACATTAATCCCGAGTCGTACAAGTCGGCAAAA
TGTCGGAAAAAGTTTTTGATAGCTAAGCACTTCTTTGAATCATCATTCGC
TACGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAGAACGTGGCAATAGA
GCAACAGTACTCTGAGGCCAGAATTCCCTCTCACCAAACCATTTTCAAAA
AGTGACCCAGGAGGGGAGTGGGTTTGAGTCTGTCCTAAAATTTAAGAACC
TTTGTTTTAATCCCAGATGCGTCCAAAAAAGCAGCTTAGCACAAAACAAG
TCAGGAGAAGTTTTAACTTAGGTGAGAACTGACTTGGGTGTAATCAGTGA
AAAATACTGTTATTTTCAGACAGATAATAATCTTTTTGTTTTCTTTACAG
TGTCCTGCGCTGGTCTGCTCAATCAACCTTAAAGACATGGGCAACAGAAG
ATCAATACTGAGACCCAATTTTAGGTGAGTTCTCTGTCACTTTCTCGGTT
TGAAGTGGAAGATAACGCTTGAGTGATTCTAAATAATCACACTTTTTCCA
AAAACATACCTGACCTTTACTATGAGCATACTGAGGCCACTTTTTTCATC
TACTCTTCAAGCCCTACCAGTTGGTCATATTAGATATGAGAATTTCTGAC
CTCCAAATTTTCAACATCAACCCTGTGGATTTCTAAATCCTACGTATCAG
TGAGAATAAAAAACACTAAGAGAATTGTTCTATTGAAAAGTGGTGCGACA
GCAAGTCATCGCCTGGTCTATTTCCTCAAGATTAGTCAGTCATAGTCCAA
ACCCCTTCAAAAGAGACTTTAAAGTGCAAAAGAGGGGGGTCTGAGAGAAA
AAGTTTCATAGAAAGGAGATGCAACAAATATTTATGTTATATAATTAATG
AAACTCCTTGGCAGTGATAAAATTAAGTAATTATTCTTTGTAGGGAGCTC
AATCGCATAGAATCACATCAACAGATCAATGTTGCTTTATTTTAACACAC
CCCTTTTAATTGAAGATCTTGGGATGTGTACATTTAATATATTGAATTTT
TCTGTTTTAGGTGTCAATGCATCATCATCATCATCAGGTGGAGTGCAACA
ATAGTATAAATCAGCGAACTTGCATCTATTCAGCTTTCACGGATTTACTT
TGAAAACTCAGCTAAACTTGAATCTATTCAGTTTATACGGATTAACTCGA
CAAACTCGTTTAATTGTTACATTGATTTATTCGGAAAACTCTGCTAAACT
TGAATTTACTCGGCATCTACTCGGTTTACTCGGCTCAGATTTAAATAGCG
AATTCAACCCATCTTGCAGCTTTCTCAGCCAATCAGAATTCCTTGAGTTT
GCTAGGTTTAAAAGAAATAAATACATTGATATTGTTATTTAACTCTCATT
TCTTGTATCTGTTCCCTTCTAAATTTTCCAAAGCATGATTTTTGCGATCC
CACTGTGCGAAATTTGTGCGAGTAAGGATTGAAACTCGGCCTTCAAGGAA
GCGAAAACAAACTAGATATGACAAAGCCCTGTTTATTGGTTTTTAGACTC
TGGGCCTTCATGCCCTTGGGCCTCTTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005172-exon-sc0000051-1575043694:29312..29396 | TCONS_00005172-exon-sc0000051-1575043694:29312..29396 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1575043694:27523..27596 | TCONS_00005172-exon-sc0000051-1575043694:27523..27596 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1575043694:26417..26936 | TCONS_00005172-exon-sc0000051-1575043694:26417..26936 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1510915933:29312..29396 | TCONS_00005172-exon-sc0000051-1510915933:29312..29396 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1510915933:27523..27596 | TCONS_00005172-exon-sc0000051-1510915933:27523..27596 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1510915933:26417..26936 | TCONS_00005172-exon-sc0000051-1510915933:26417..26936 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1491911889:29312..29396 | TCONS_00005172-exon-sc0000051-1491911889:29312..29396 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1491911889:27523..27596 | TCONS_00005172-exon-sc0000051-1491911889:27523..27596 | Clytia hemisphaerica | exon |
| TCONS_00005172-exon-sc0000051-1491911889:26417..26936 | TCONS_00005172-exon-sc0000051-1491911889:26417..26936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:26417..29396 - |
Blast
The following BLAST results are available for this feature:
|
