TCONS_00005169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005169
Unique NameTCONS_00005169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005169 ID=TCONS_00005169|Name=TCONS_00005169|organism=Clytia hemisphaerica|type=transcript|length=1851bp
aacttttataatctttcagtttatttaCAAAACTAAAACATGTTAAATTT
TTGTGAGGGACTTCACTTGACTTTCCAATCCTTTCATCTGTTTACTTGTT
GTGGaaagtatttttattttgtttgcatATTGGATGATATTACACCATCA
TAACAAGAGTTTTGGAGTGATTggtttataaaaaactagacaaGCATATA
AAAGCCAGAAGACACTCAAAGTGCATTTATTCGATTTGAAATATATTATC
AAGACAGAAACTACATTTAGACATGtggttttttgaaagaaagatggACA
AGTTTTTGTACCTATTGCTTGTATGGCTTGGAATCCTTTGTATTTGTAGT
GACAGAGTTTTTTCGGCTGGAGATAACAAACTGGAATTCATCGACAAGAA
CATGCCACAATTTGTCGTCTATCCATACGGTGATACAGCAATTCTATATT
GCAATGCGACCAGTACTTCACCTATCCGATATAGATGAAAAAGTGGTGAA
AGGACCATACATTGACAAAGATGACGGAAATTATGAAACCGTTCTGACTG
GCTCTAATGCTTCTTTACCATGCGATGAAATCAGAAGCAGCACTCTACCC
GATTTCCGATGGTTGCGATGGAACGGGGCTGTCAATCTTaccattttgaa
taaaattgcTCAACCAGGAAACGGAATCAAAATTACAGAACTTGAATCAA
TGGTTGAAATCGTACCAGCAGACAGATATCGGCAAGTATCCAAGAGCAAA
AATGGTCATAGAGTTCATGGCGTGGAACTTATGTTTCCCAAAGTGACGGT
AGCCGATCGTGGGTTTTACACGTGTTTAGTACTCAACCATATTGGATACG
ATTATAAAACAACATATCTGAGCGTGGAGAATGCAAGCGAGGACCAAGTC
AAAATACTGTTGAGAGTTTGGCCTTTAGTAATGAACAAAACATCAGCGGA
AATCATAACTCGCCTCAGAAATGAAACGGTTGAAATCTTTTGTTCTGCAT
ACAGTCACACGCAAAATATGACCGGAACAATCGTTAGAATGGGTGTGCCA
GTTCCAAGCGCTGTTGAACGCAAgaaagataatttgtttttggTGAAAGC
TCAAGTTAATGAAGATGGAACTTATGTTTGTACTATAAGATATGGGAATG
AGAAAGTTCAAAGTGCAAGCTTCGTTGAAAAATTCCATTtaaAATCGGTG
ATTTTAAATTCAACATCAATTGAGCATCTCGGCAAATGGTTGAAAGAATC
CAAACAATTGGGACGTTACAAAGCATGCTGGGATACAAACACTTATGTTC
CAAACATCAACTCTGAAGGAATGTTTTTTACTAAGAAGTATTGCGGTGGA
AAGAAAAACACGATTACTCTTATACAAATCCGAGATAAATGGGTTTCGTA
TTATCGAACCCCGAATCGGGATTGGGACACAACTCTTGGTGGATTCACAG
AAATTTCTTGGACTCAGGGTACAAAGGCAAACAGTACCAAAACGTTTATG
TTTGAATTTAACCCTCCAAAGAAATACACGCCGCGTTTCGGTGGAAAAAA
TGCGATTTGTGGTTACGGAAGTGGCCCATGTTTTGGTAACAAGAATCTTT
ATACAGCCGGATTTCCTCCGTACGCGTATGGGTCACGAGGCAACATCTGG
AAGATAAGAGGAATATGGTATAGCAGGGCCGTTTTTGATatattgaaatt
gaattttgcGCAAGGTTATCCTCGAAGAATGGAAGTGTTTTATAGACTTT
GAAGAATAAAAGCAGCGATAAAAACTAACCTTTTATGTAGTATTTTGGTG
GGAAGTTGATATTTCAAAttaatcaagaaaaaaattaaataagagtTATT
A
Run BLAST on NCBI

transcript from alignment at sc0000051:757335..762112+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005169 ID=TCONS_00005169|Name=TCONS_00005169|organism=Clytia hemisphaerica|type=transcript|length=4778bp|location=Sequence derived from alignment at sc0000051:757335..762112+ (Clytia hemisphaerica)
aacttttataatctttcagtttatttaCAAAACTAAAACATGTTAAATTT
TTGTGAGGGACTTCACTTGACTTTCCAATCCTTTCATCTGTTTACTTGTT
GTGGaaagtatttttattttgtttgcatATTGGATGATATTACACCATCA
TAACAAGAGTTTTGGAGTGATTggtttataaaaaactagacaaGCATATA
AAAGCCAGAAGACACTCAAAGTGCATTTATTCGATTTGAAATATATTATC
AAGACAGAAACTACATTTAGACATGtggttttttgaaagaaagatggACA
AGTTTTTGTACCTATTGCTTGTATGGCTTGGAATCCTTTGTATTTGTAGT
GACAGAGTTTTTTCGGCTGGAGGTAAGCGTTTTTCCTTCTGGGTAGTGGT
ACTTGGTTAAAAACGGGTGATGGATATACGTATTCGTATTTTGTTTTTCA
TGAAATCAAAAACGAGACCAATGATACTAAATGATGCATAAGATTCTTAT
TTAAGCTATAGAAAGGAAGCTGTGGCAGTTAGTGTAGGCTATGGCTAGGG
TTGGTCAAATATTTCGCTTATTGACTTATCAtggttattttattttcata
tttttgttaGATAACAAACTGGAATTCATCGACAAGAACATGCCACAATT
TGTCGTCTATCCATACGGTGATACAGCAATTCTATATTGCAATGCGACCA
GTACTTCACCTATCCGATATAGATGGTACAAAAACGGTAGAAAGCTGAGT
GGTAGAAGTTCATCTTTGATAACCAATAGTCcttatttgattttcaaagg
TCTGGTTTTAACAGATACGGCGACATACAGAtgtaaggcgaaaataaaag
gaatgaaaattgaacatgacTTTAAACTGATTGTCAAAGGTATTACTTTT
TacatttaaccctttaagtgccaatatAGGATAAATACAACATGGGTCAT
TTAAGAATCAACGCACATTGACCATTCCATCCTGCCAAAATTTGCCATCC
TAATTTTTTGCCCaactttttttaaccctttttaaaaagtaatgtTAAGA
CTCGGGCTAGTGAAAAGTCGCACGTAAAACAACAATACATTCCCTTTAGA
AAAAGTGGTGAAAGGACCATACATTGACAAAGATGACGGAAATTATGAAA
CCGTTCTGACTGGCTCTAATGCTTCTTTACCATGCGATGAAATCAGAAGC
AGCACTCTACCCGATTTCCGATGGTTGCGATGGAACGGGGCTGTCAATCT
TaccattttgaataaaattgcTCAACCAGGAAACGGAATCAAAATTACAG
AACTTGAATCAATGGTTGAAATCGTACCAGCAGACAGATATCGGCAAGTA
TCCAAGAGCAAAAATGGTCATAGAGTTCATGGCGTGGAACTTATGTTTCC
CAAAGTGACGGTAGCCGATCGTGGGTTTTACACGTGTTTAGTACTCAACC
ATATTGGATACGATTATAAAACAACATATCTGAGCGTGGAGAATGCAAGT
AAGTTAATCATATGCAATTATTAACTTTACCCATTAAACGCTACTAAAGA
TCCTTGAAATCAACTTCTCACTGATTTTTTGACAATGCCTTTCATTTTAA
TAACCAAACCGTAACCAACACAGGTTTGACGAGAAGTTTCACGGGACAGT
GAAAAAGACAAAGAGAAGctgttatattttcaaaatttctatggCACTAA
TGGCTCTGcgaatttgaaaaactttgctgTGTGTGACATTTTTTATGTCC
ACCCTgtatatacagggtgtcccgaaaaaaatgtATCGAGTCGcaccact
tctatagaaagaaagttcttgtgtgtgtttcactaaatttgcaatgttta
tcaaagtttatcgatactttttttcgggacacactgTAGTAGGAGGTTTG
AAGTTTTTTTGGGTGGAAGTTTGTTTAATTTCTTCAATCTCGCTATAGAA
TGAAGTGTGATTTTTGAAATACAAAATACATTTTCAGATAATACTTTATT
ATTCCGAAAACATTAGTTCCATTTATATTGAGACGGAAAAATCATCTGAG
ATgagtagtttgtaaaatgtgatcggtggaggagatcctatttattgaaa
catgaatggaaatTACACTCCTCCATAAAGCTGATTTCTCAATTTGCTCG
TCTCAGACAAactaatacacccctgtctcacaaccccggtggaacatttt
cccagtggggataaaaattcctatcgaaattcaaatggggatataaattc
tattgttccaaagttaaagaatccagtggggatggttttggagtgcagtt
tttaaacattgattttCAGATATTGATGGAATCacagtcaatttcccagt
ggggcttggatcccagcgggtctgtgacacaggggtgtactaATTGTCAG
GGGTGTATTAATGTTTTCATCTTTTTATTTCGTCTTTCTTAGTCAAACCT
GTGATCCAACGGATTCGATCAAAACTCTTCATAGCACAATTAGGCACCGA
TTTCAATTTCCCAGAATGCAAGGTTCTTTTCCAATCAAAACCACCTGCTA
AAATAACCTGGGAAAAGTTATTCAGCACAATAACCAATGAACGACATGTT
ATTCGTGGAAATAGAGTGATGGTAAAAAAAGTGCAACATTCAGATGCTGG
ATATTATACTTGTATTGCAAGAAATTCTGCTGGTAAATCTTTATATGTTT
AAAACGCTGCTGTCCTGTTTCCAGTGGGAAAATCCAGGCGCATTCCCCTA
CCTTGGGGTAGATAACTGTAAAAAAGGGAACCTCGGGGTCACGCTGAACT
GCGGTCGCTAGCTTACTTACTTATCCTTAGCGTAAAAACTATCGGTATTA
AATTTTGTGattcaaaaatgttgttttggtATTATCTTTCAGAGttctac
ttttcttttgattttgaaacCAACTAGTTATAAATTTCCAGCCTCAGAAC
AGATTTTCATTCAATGTaacattttttatgaattttttttctattttaat
tgGTTTATTCACTTTTAGGCGAGGACCAAGTCAAAATACTGTTGAGAGTT
TGGCCTTTAGTAATGAACAAAACATCAGCGGAAATCATAACTCGCCTCAG
AAATGAAACGGTTGAAATCTTTTGTTCTGCATACAGTCACACGCAAAATA
TGACCGGAACAATCGTTAGAATGGGTGTGCCAGTTCCAAGCGCTGTTGAA
CGCAAgaaagataatttgtttttggTGAAAGCTCAAGTTAATGAAGATGG
AACTTATGTTTGTACTATAAGATATGGGAATGAGAAAGTTCAAAGTGCAA
GCTTCGTTGAAAAATTCCATTGTAAGTTCTTTTTTATTCAGGCACAGCAT
ATTTGGATTTAATCTTTTATGAAGTAGTTCTTTCAGGCTGGTGTATTAAA
AAAATTGTCCCTTTTTTAGTTAGTTCACAAAGTGTACTATGCATATCATA
AGCATTCGAGgctcaaaaaattcattttgctaagcataatgaGGCTCACA
AATATTTAccctatgcttataaaaaggaGGGGAGGAGGAAAGAGCTGAAC
CTTCCCTTAGCACAGGGAATAGACTCAAACTTAACTTAGGGTTCACATCG
CTAAAGAATGCTAAAATAAACTAGCAAGAAAACATTAGGTGGAAATGATA
AACTAAATATAATTATGAATAACATGATTAACAATACTGTAACACGATTC
AAAGCTTTCCCATACCATTCCATACCATACCATaccaacttttttcaaaa
aaaaaaagcaaaaaaaaacgtgtagatattattaatttttaagttcaAAG
ACATAATCTTTAAGACTTTAGGTTTAATTTTGGGTGATCAAAAATTGCGA
TAAAATGAATAAActttgaaatatcttttcatttttttcagtaaAATCGG
TGATTTTAAATTCAACATCAATTGAGCATCTCGGCAAATGGTTGAAAGAA
TCCAAACAATTGGGACGTTACAAAGCATGCTGGGATACAAACACTTATGT
TCCAAACATCAACTCTGAAGGAATGTTTTTTACTAAGAAGTATTGCGGTG
GAAAGAAAAACACGATTACTCTTATACAAATCCGAGATAAATGGGTTTCG
TATTATCGAACCCCGAATCGGGATTGGGACACAACTCTTGGTGGATTCAC
AGAAATTTCTTGGACTCAGGGTAAGTATTATAATACTTAAATGCCAGGAG
TTTTCAATGTCGATTTCTACGGGGCTCAAGTTACTAATTGTAAAAAGTCT
ACGTAACTACCACACATTTCAGAAAGCACAAAATTAAAATGTTGATCGAG
TCATTGATTCGAAATGTTTGCTGAAGATACCAATTTCATGTCAATTAGAT
ATTCTTTTCAAAGTTACTAATATACTCCTTTTAATTTCTTTGCAGGTACA
AAGGCAAACAGTACCAAAACGTTTATGTTTGAATTTAACCCTCCAAAGAA
ATACACGCCGCGTTTCGGTGGAAAAAATGCGATTTGTGGTTACGGAAGTG
GCCCATGTTTTGGTAACAAGAATCTTTATACAGCCGGATTTCCTCCGTAC
GCGTATGGGTCACGAGGCAACATCTGGAAGATAAGAGGAATATGGTATAG
CAGGGCCGTTTTTGATatattgaaattgaattttgcGCAAGGTTATCCTC
GAAGAATGGAAGTGTTTTATAGACTTTGAAGAATAAAAGCAGCGATAAAA
ACTAACCTTTTATGTAGTATTTTGGTGGGAAGTTGATATTTCAAAttaat
caagaaaaaaattaaataagagtTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002942XLOC_002942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005169-exon-sc0000051-1491911889:757335..757706TCONS_00005169-exon-sc0000051-1491911889:757335..757706Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1510915933:757335..757706TCONS_00005169-exon-sc0000051-1510915933:757335..757706Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1575043694:757335..757706TCONS_00005169-exon-sc0000051-1575043694:757335..757706Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1491911889:757945..758059TCONS_00005169-exon-sc0000051-1491911889:757945..758059Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1510915933:757945..758059TCONS_00005169-exon-sc0000051-1510915933:757945..758059Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1575043694:757945..758059TCONS_00005169-exon-sc0000051-1575043694:757945..758059Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1491911889:758434..758832TCONS_00005169-exon-sc0000051-1491911889:758434..758832Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1510915933:758434..758832TCONS_00005169-exon-sc0000051-1510915933:758434..758832Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1575043694:758434..758832TCONS_00005169-exon-sc0000051-1575043694:758434..758832Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1491911889:760353..760655TCONS_00005169-exon-sc0000051-1491911889:760353..760655Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1510915933:760353..760655TCONS_00005169-exon-sc0000051-1510915933:760353..760655Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1575043694:760353..760655TCONS_00005169-exon-sc0000051-1575043694:760353..760655Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1491911889:761226..761504TCONS_00005169-exon-sc0000051-1491911889:761226..761504Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1510915933:761226..761504TCONS_00005169-exon-sc0000051-1510915933:761226..761504Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1575043694:761226..761504TCONS_00005169-exon-sc0000051-1575043694:761226..761504Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1491911889:761730..762112TCONS_00005169-exon-sc0000051-1491911889:761730..762112Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1510915933:761730..762112TCONS_00005169-exon-sc0000051-1510915933:761730..762112Clytia hemisphaericaexon
TCONS_00005169-exon-sc0000051-1575043694:761730..762112TCONS_00005169-exon-sc0000051-1575043694:761730..762112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:757335..762112 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0432128	0	0	0	0.174825	0	0.741313	0.34183	0.36915	0.580651	0.926894	1.22986	0.304836	0.26261	2.97221	4.34102	2.06237	1.11435	9.29336	9.9228	1.79392	3.11152	2.31636	1.78317	0	0	0.191321	0.240756	3.19619	1.70514
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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