TCONS_00005167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005167
Unique NameTCONS_00005167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2096

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005167 ID=TCONS_00005167|Name=TCONS_00005167|organism=Clytia hemisphaerica|type=transcript|length=2096bp
gtTTAATCTTTCGCACCATCGGGCGCTAAAAGTGTCCATTTTTGTTTCCG
AAACTTTACTAGTTTTTTCgatccaaaaaaaaacttttataatctttcag
tttatttaCAAAACTAAAACATGTTAAATTTTTGTGAGGGACTTCACTTG
ACTTTCCAATCCTTTCATCTGTTTACTTGTTGTGGaaagtatttttattt
tgtttgcatATTGGATGATATTACACCATCATAACAAGAGTTTTGGAGTG
ATTggtttataaaaaactagacaaGCATATAAAAGCCAGAAGACACTCAA
AGTGCATTTATTCGATTTGAAATATATTATCAAGACAGAAACTACATTTA
GACATGtggttttttgaaagaaagatggACAAGTTTTTGTACCTATTGCT
TGTATGGCTTGGAATCCTTTGTATTTGTAGTGACAGAGTTTTTTCGGCTG
GAGATAACAAACTGGAATTCATCGACAAGAACATGCCACAATTTGTCGTC
TATCCATACGGTGATACAGCAATTCTATATTGCAATGCGACCAGTACTTC
ACCTATCCGATATAGATGGTACAAAAACGGTAGAAAGCTGAGTGGTAGAA
GTTCATCTTTGATAACCAATAGTCcttatttgattttcaaaggTCTGGTT
TTAACAGATACGGCGACATACAGAtgtaaggcgaaaataaaaggaatgaa
aattgaacatgacTTTAAACTGATTGTCAAAGAAAAAGTGGTGAAAGGAC
CATACATTGACAAAGATGACGGAAATTATGAAACCGTTCTGACTGGCTCT
AATGCTTCTTTACCATGCGATGAAATCAGAAGCAGCACTCTACCCGATTT
CCGATGGTTGCGATGGAACGGGGCTGTCAATCTTaccattttgaataaaa
ttgcTCAACCAGGAAACGGAATCAAAATTACAGAACTTGAATCAATGGTT
GAAATCGTACCAGCAGACAGATATCGGCAAGTATCCAAGAGCAAAAATGG
TCATAGAGTTCATGGCGTGGAACTTATGTTTCCCAAAGTGACGGTAGCCG
ATCGTGGGTTTTACACGTGTTTAGTACTCAACCATATTGGATACGATTAT
AAAACAACATATCTGAGCGTGGAGAATGCAAGCGAGGACCAAGTCAAAAT
ACTGTTGAGAGTTTGGCCTTTAGTAATGAACAAAACATCAGCGGAAATCA
TAACTCGCCTCAGAAATGAAACGGTTGAAATCTTTTGTTCTGCATACAGT
CACACGCAAAATATGACCGGAACAATCGTTAGAATGGGTGTGCCAGTTCC
AAGCGCTGTTGAACGCAAgaaagataatttgtttttggTGAAAGCTCAAG
TTAATGAAGATGGAACTTATGTTTGTACTATAAGATATGGGAATGAGAAA
GTTCAAAGTGCAAGCTTCGTTGAAAAATTCCATTtaaAATCGGTGATTTT
AAATTCAACATCAATTGAGCATCTCGGCAAATGGTTGAAAGAATCCAAAC
AATTGGGACGTTACAAAGCATGCTGGGATACAAACACTTATGTTCCAAAC
ATCAACTCTGAAGGAATGTTTTTTACTAAGAAGTATTGCGGTGGAAAGAA
AAACACGATTACTCTTATACAAATCCGAGATAAATGGGTTTCGTATTATC
GAACCCCGAATCGGGATTGGGACACAACTCTTGGTGGATTCACAGAAATT
TCTTGGACTCAGGGTACAAAGGCAAACAGTACCAAAACGTTTATGTTTGA
ATTTAACCCTCCAAAGAAATACACGCCGCGTTTCGGTGGAAAAAATGCGA
TTTGTGGTTACGGAAGTGGCCCATGTTTTGGTAACAAGAATCTTTATACA
GCCGGATTTCCTCCGTACGCGTATGGGTCACGAGGCAACATCTGGAAGAT
AAGAGGAATATGGTATAGCAGGGCCGTTTTTGATatattgaaattgaatt
ttgcGCAAGGTTATCCTCGAAGAATGGAAGTGTTTTATAGACTTTGAAGA
ATAAAAGCAGCGATAAAAACTAACCTTTTATGTAGTATTTTGGTGGGAAG
TTGATATTTCAAAttaatcaagaaaaaaattaaataagagtTATTA
Run BLAST on NCBI

transcript from alignment at sc0000051:757254..762112+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005167 ID=TCONS_00005167|Name=TCONS_00005167|organism=Clytia hemisphaerica|type=transcript|length=4859bp|location=Sequence derived from alignment at sc0000051:757254..762112+ (Clytia hemisphaerica)
gtTTAATCTTTCGCACCATCGGGCGCTAAAAGTGTCCATTTTTGTTTCCG
AAACTTTACTAGTTTTTTCgatccaaaaaaaaacttttataatctttcag
tttatttaCAAAACTAAAACATGTTAAATTTTTGTGAGGGACTTCACTTG
ACTTTCCAATCCTTTCATCTGTTTACTTGTTGTGGaaagtatttttattt
tgtttgcatATTGGATGATATTACACCATCATAACAAGAGTTTTGGAGTG
ATTggtttataaaaaactagacaaGCATATAAAAGCCAGAAGACACTCAA
AGTGCATTTATTCGATTTGAAATATATTATCAAGACAGAAACTACATTTA
GACATGtggttttttgaaagaaagatggACAAGTTTTTGTACCTATTGCT
TGTATGGCTTGGAATCCTTTGTATTTGTAGTGACAGAGTTTTTTCGGCTG
GAGGTAAGCGTTTTTCCTTCTGGGTAGTGGTACTTGGTTAAAAACGGGTG
ATGGATATACGTATTCGTATTTTGTTTTTCATGAAATCAAAAACGAGACC
AATGATACTAAATGATGCATAAGATTCTTATTTAAGCTATAGAAAGGAAG
CTGTGGCAGTTAGTGTAGGCTATGGCTAGGGTTGGTCAAATATTTCGCTT
ATTGACTTATCAtggttattttattttcatatttttgttaGATAACAAAC
TGGAATTCATCGACAAGAACATGCCACAATTTGTCGTCTATCCATACGGT
GATACAGCAATTCTATATTGCAATGCGACCAGTACTTCACCTATCCGATA
TAGATGGTACAAAAACGGTAGAAAGCTGAGTGGTAGAAGTTCATCTTTGA
TAACCAATAGTCcttatttgattttcaaaggTCTGGTTTTAACAGATACG
GCGACATACAGAtgtaaggcgaaaataaaaggaatgaaaattgaacatga
cTTTAAACTGATTGTCAAAGGTATTACTTTTTacatttaaccctttaagt
gccaatatAGGATAAATACAACATGGGTCATTTAAGAATCAACGCACATT
GACCATTCCATCCTGCCAAAATTTGCCATCCTAATTTTTTGCCCaacttt
ttttaaccctttttaaaaagtaatgtTAAGACTCGGGCTAGTGAAAAGTC
GCACGTAAAACAACAATACATTCCCTTTAGAAAAAGTGGTGAAAGGACCA
TACATTGACAAAGATGACGGAAATTATGAAACCGTTCTGACTGGCTCTAA
TGCTTCTTTACCATGCGATGAAATCAGAAGCAGCACTCTACCCGATTTCC
GATGGTTGCGATGGAACGGGGCTGTCAATCTTaccattttgaataaaatt
gcTCAACCAGGAAACGGAATCAAAATTACAGAACTTGAATCAATGGTTGA
AATCGTACCAGCAGACAGATATCGGCAAGTATCCAAGAGCAAAAATGGTC
ATAGAGTTCATGGCGTGGAACTTATGTTTCCCAAAGTGACGGTAGCCGAT
CGTGGGTTTTACACGTGTTTAGTACTCAACCATATTGGATACGATTATAA
AACAACATATCTGAGCGTGGAGAATGCAAGTAAGTTAATCATATGCAATT
ATTAACTTTACCCATTAAACGCTACTAAAGATCCTTGAAATCAACTTCTC
ACTGATTTTTTGACAATGCCTTTCATTTTAATAACCAAACCGTAACCAAC
ACAGGTTTGACGAGAAGTTTCACGGGACAGTGAAAAAGACAAAGAGAAGc
tgttatattttcaaaatttctatggCACTAATGGCTCTGcgaatttgaaa
aactttgctgTGTGTGACATTTTTTATGTCCACCCTgtatatacagggtg
tcccgaaaaaaatgtATCGAGTCGcaccacttctatagaaagaaagttct
tgtgtgtgtttcactaaatttgcaatgtttatcaaagtttatcgatactt
tttttcgggacacactgTAGTAGGAGGTTTGAAGTTTTTTTGGGTGGAAG
TTTGTTTAATTTCTTCAATCTCGCTATAGAATGAAGTGTGATTTTTGAAA
TACAAAATACATTTTCAGATAATACTTTATTATTCCGAAAACATTAGTTC
CATTTATATTGAGACGGAAAAATCATCTGAGATgagtagtttgtaaaatg
tgatcggtggaggagatcctatttattgaaacatgaatggaaatTACACT
CCTCCATAAAGCTGATTTCTCAATTTGCTCGTCTCAGACAAactaataca
cccctgtctcacaaccccggtggaacattttcccagtggggataaaaatt
cctatcgaaattcaaatggggatataaattctattgttccaaagttaaag
aatccagtggggatggttttggagtgcagtttttaaacattgattttCAG
ATATTGATGGAATCacagtcaatttcccagtggggcttggatcccagcgg
gtctgtgacacaggggtgtactaATTGTCAGGGGTGTATTAATGTTTTCA
TCTTTTTATTTCGTCTTTCTTAGTCAAACCTGTGATCCAACGGATTCGAT
CAAAACTCTTCATAGCACAATTAGGCACCGATTTCAATTTCCCAGAATGC
AAGGTTCTTTTCCAATCAAAACCACCTGCTAAAATAACCTGGGAAAAGTT
ATTCAGCACAATAACCAATGAACGACATGTTATTCGTGGAAATAGAGTGA
TGGTAAAAAAAGTGCAACATTCAGATGCTGGATATTATACTTGTATTGCA
AGAAATTCTGCTGGTAAATCTTTATATGTTTAAAACGCTGCTGTCCTGTT
TCCAGTGGGAAAATCCAGGCGCATTCCCCTACCTTGGGGTAGATAACTGT
AAAAAAGGGAACCTCGGGGTCACGCTGAACTGCGGTCGCTAGCTTACTTA
CTTATCCTTAGCGTAAAAACTATCGGTATTAAATTTTGTGattcaaaaat
gttgttttggtATTATCTTTCAGAGttctacttttcttttgattttgaaa
cCAACTAGTTATAAATTTCCAGCCTCAGAACAGATTTTCATTCAATGTaa
cattttttatgaattttttttctattttaattgGTTTATTCACTTTTAGG
CGAGGACCAAGTCAAAATACTGTTGAGAGTTTGGCCTTTAGTAATGAACA
AAACATCAGCGGAAATCATAACTCGCCTCAGAAATGAAACGGTTGAAATC
TTTTGTTCTGCATACAGTCACACGCAAAATATGACCGGAACAATCGTTAG
AATGGGTGTGCCAGTTCCAAGCGCTGTTGAACGCAAgaaagataatttgt
ttttggTGAAAGCTCAAGTTAATGAAGATGGAACTTATGTTTGTACTATA
AGATATGGGAATGAGAAAGTTCAAAGTGCAAGCTTCGTTGAAAAATTCCA
TTGTAAGTTCTTTTTTATTCAGGCACAGCATATTTGGATTTAATCTTTTA
TGAAGTAGTTCTTTCAGGCTGGTGTATTAAAAAAATTGTCCCTTTTTTAG
TTAGTTCACAAAGTGTACTATGCATATCATAAGCATTCGAGgctcaaaaa
attcattttgctaagcataatgaGGCTCACAAATATTTAccctatgctta
taaaaaggaGGGGAGGAGGAAAGAGCTGAACCTTCCCTTAGCACAGGGAA
TAGACTCAAACTTAACTTAGGGTTCACATCGCTAAAGAATGCTAAAATAA
ACTAGCAAGAAAACATTAGGTGGAAATGATAAACTAAATATAATTATGAA
TAACATGATTAACAATACTGTAACACGATTCAAAGCTTTCCCATACCATT
CCATACCATACCATaccaacttttttcaaaaaaaaaaagcaaaaaaaaac
gtgtagatattattaatttttaagttcaAAGACATAATCTTTAAGACTTT
AGGTTTAATTTTGGGTGATCAAAAATTGCGATAAAATGAATAAActttga
aatatcttttcatttttttcagtaaAATCGGTGATTTTAAATTCAACATC
AATTGAGCATCTCGGCAAATGGTTGAAAGAATCCAAACAATTGGGACGTT
ACAAAGCATGCTGGGATACAAACACTTATGTTCCAAACATCAACTCTGAA
GGAATGTTTTTTACTAAGAAGTATTGCGGTGGAAAGAAAAACACGATTAC
TCTTATACAAATCCGAGATAAATGGGTTTCGTATTATCGAACCCCGAATC
GGGATTGGGACACAACTCTTGGTGGATTCACAGAAATTTCTTGGACTCAG
GGTAAGTATTATAATACTTAAATGCCAGGAGTTTTCAATGTCGATTTCTA
CGGGGCTCAAGTTACTAATTGTAAAAAGTCTACGTAACTACCACACATTT
CAGAAAGCACAAAATTAAAATGTTGATCGAGTCATTGATTCGAAATGTTT
GCTGAAGATACCAATTTCATGTCAATTAGATATTCTTTTCAAAGTTACTA
ATATACTCCTTTTAATTTCTTTGCAGGTACAAAGGCAAACAGTACCAAAA
CGTTTATGTTTGAATTTAACCCTCCAAAGAAATACACGCCGCGTTTCGGT
GGAAAAAATGCGATTTGTGGTTACGGAAGTGGCCCATGTTTTGGTAACAA
GAATCTTTATACAGCCGGATTTCCTCCGTACGCGTATGGGTCACGAGGCA
ACATCTGGAAGATAAGAGGAATATGGTATAGCAGGGCCGTTTTTGATata
ttgaaattgaattttgcGCAAGGTTATCCTCGAAGAATGGAAGTGTTTTA
TAGACTTTGAAGAATAAAAGCAGCGATAAAAACTAACCTTTTATGTAGTA
TTTTGGTGGGAAGTTGATATTTCAAAttaatcaagaaaaaaattaaataa
gagtTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002942XLOC_002942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005167-exon-sc0000051-1491911889:757254..757706TCONS_00005167-exon-sc0000051-1491911889:757254..757706Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1510915933:757254..757706TCONS_00005167-exon-sc0000051-1510915933:757254..757706Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1575043694:757254..757706TCONS_00005167-exon-sc0000051-1575043694:757254..757706Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1491911889:757945..758223TCONS_00005167-exon-sc0000051-1491911889:757945..758223Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1510915933:757945..758223TCONS_00005167-exon-sc0000051-1510915933:757945..758223Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1575043694:757945..758223TCONS_00005167-exon-sc0000051-1575043694:757945..758223Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1491911889:758434..758832TCONS_00005167-exon-sc0000051-1491911889:758434..758832Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1510915933:758434..758832TCONS_00005167-exon-sc0000051-1510915933:758434..758832Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1575043694:758434..758832TCONS_00005167-exon-sc0000051-1575043694:758434..758832Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1491911889:760353..760655TCONS_00005167-exon-sc0000051-1491911889:760353..760655Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1510915933:760353..760655TCONS_00005167-exon-sc0000051-1510915933:760353..760655Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1575043694:760353..760655TCONS_00005167-exon-sc0000051-1575043694:760353..760655Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1491911889:761226..761504TCONS_00005167-exon-sc0000051-1491911889:761226..761504Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1510915933:761226..761504TCONS_00005167-exon-sc0000051-1510915933:761226..761504Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1575043694:761226..761504TCONS_00005167-exon-sc0000051-1575043694:761226..761504Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1491911889:761730..762112TCONS_00005167-exon-sc0000051-1491911889:761730..762112Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1510915933:761730..762112TCONS_00005167-exon-sc0000051-1510915933:761730..762112Clytia hemisphaericaexon
TCONS_00005167-exon-sc0000051-1575043694:761730..762112TCONS_00005167-exon-sc0000051-1575043694:761730..762112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:757254..762112 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	4.64967e-05	0	2.31067	0	0.0204643	0	0.971298	1.26663	1.05536	0.00576966	1.44633	6.17809	0.533779	0.183532	0.00498474	0.00524304	0	0	0	0	1.43982	0.982518
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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