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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005163 ID=TCONS_00005163|Name=TCONS_00005163|organism=Clytia hemisphaerica|type=transcript|length=2410bpRun BLAST on NCBI transcript from alignment at sc0000051:720223..747822+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005163 ID=TCONS_00005163|Name=TCONS_00005163|organism=Clytia hemisphaerica|type=transcript|length=27600bp|location=Sequence derived from alignment at sc0000051:720223..747822+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005163 vs. Swiss-Prot (Human)
Match: AGRG2 (Adhesion G-protein coupled receptor G2 OS=Homo sapiens GN=ADGRG2 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.354e-24 Identity = 108/400 (27.00%), Postives = 182/400 (45.50%), Query Frame = 3
Query: 498 KEMLKVFDSIAY--NFIHTTSRTTLSVNGKFIALSLRKVRSRQI---TFATTSALSGNISMLYENQVGAMNSVTLPQSVFDGLPGEETVL-------FHEMVPTEAMPTLSNETMVSNIISVRVLTEQKKFDQLKDPIKLTF-HVGPLK-HVNVSCAFWDIQN----GLWSKEGCQVTSWLQNEGVVECQCQHLTDFAVIAESAIISSMTKGDEGSGFAHIFAFIGSFIAVLALGATLITYLCVKTIRSQIASKAIASFSLSLMLAFISFVAA--LTFVKKETLCFIVGRFLHYFILTSFSWMFIQAILLYRTIVVMSTKLTDGFYFKLMSVFAWGLPLVITGV---TSFFSYQMS----FKQNNEHDVKLCFV-EKAQFYGAVLAPTVLLAIVNVLLFI 1613
+ +LKV D I NF S TT+S+ +AL++ +V + TF + +S+ + ++ ++TLP S+ + LP + L F E P+L N +++S +IS V + L + +T H+ P + + V C FWD+ G WS GC V NE + C C HLT F V+ + + S + F +IG ++ + L TL+TY+ + IR SK + +L+L + F+ + K + LC V FLHYF+L SF+WM ++A +Y +V + + K + WG+P V+ + S +Y + F + D C++ A FY V+ ++ ++NV +FI
Sbjct: 421 QRLLKVVDDIGLQLNF----SNTTISLTSPSLALAVIRVNASSFNTTTFVAQDPANLQVSLETQAPENSIGTITLPSSLMNNLPAHDMELASRVQFNFFETPALFQDPSLENLSLISYVISSSVANLTVR--NLTRNVTVTLKHINPSQDELTVRCVFWDLGRNGGRGGWSDNGCSVKDRRLNETI--CTCSHLTSFGVLLDLSRTSVLPAQMMALTF---ITYIGCGLSSIFLSVTLVTYIAFEKIRRDYPSKILIQLCAALLLLNLVFLLDSWIALYKMQGLCISVAVFLHYFLLVSFTWMGLEAFHMYLALVKVFNTYIRKYILKF-CIVGWGVPAVVVTIILTISPDNYGLGSYGKFPNGSPDD--FCWINNNAVFYITVVGYFCVIFLLNVSMFI 806 The following BLAST results are available for this feature:
BLAST of TCONS_00005163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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