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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005155 ID=TCONS_00005155|Name=TCONS_00005155|organism=Clytia hemisphaerica|type=transcript|length=1460bp
TTCGTTTCTACTTCTTCTCATTTGATGATACTAATACCTTAAGAAAACTA
ATTTTCggtggaactaatttttgcggaactaatttttgcgattttggatg
tttaccgcgaaaattagtcccgcgaaatgcaatttctcctaaaaatcctc
aaaaacccCTAGAAATACGAAAGAATATCGGTAAAAAGGGGATGtcaacc
gcaaaaattaattccatAAAATGCGCCAATTTAGTACCGTCGTAATGTGA
AAATAAGTTCCGCGAAAAGGAGTTCTCTTAAGGTAGTCTAGAATATAGAT
ATCTTTTACAATGCTTTATTCCAATATAGATTTTGTCATAACATagttca
atttcaattttaatttttacttCTTTATTCAATATGTCCATTGTTATTCA
GTTGAATCATTTTCCATGACCTTCTTTTCCAAAGAGACCTGCTGCTTCGG
ACGTCGGTATGGTTGTGGGGTCGGTAGTGGGTGGGGTCGATTTGCAGTTA
AAATTATCCCATTCCACAACTTCTGCGTGTATTTTATCACAGTAGGACCC
GTAACACCAATTAGATTCCTCGTCAAAACCTTCGTCCATTGTTTCTCCGG
GTGCATAGAATTTTCCATCATCCCCCAGGCAACCACGGGGTGTTGTCATA
GGAGGGGTTGTCATGGTTTCTGTGGTTGTTGGGGGAGTGGTTTTGCAGTT
GAAATTATCCCAGTGTTGTATTTGGCCATGTTGGTCGCAATATGTCCCAT
AACACCAATTTGTTTGTTCGTCAAATCCATCGTTCATCTTTTCTCCCGGT
GCATAGAATTTTCCATCATCTCCATAGCAACCAAGTGGCGTTGTCATGGG
AGTAGTGGTCGTTGGAGTTGTGGTCGTCATAGGTTCCGTGGTTGGGGGAG
TTGTTTTGCAGTTGAAATTGTCCCATTTAATCACTTGTCCATGTTGATCA
CAATAAGATCCATAACACCAATTTGTTTGTCCATCAAACCCTTCGCTCAT
CTTTTCTCCAGGTGCATAGAATTTTCCATCATCTCCATAGCAACCATGAG
GTGTTGTCATGGGAGTAGTTGTCAACGACTTTGTAGTAGTTGTGACAGGG
GGTTTAGTGGAGCTGATGATTTCATGGCATCTTTCGGGAAGGCGGTTCAA
TCTTTGAGTGATTTTCCCTCTCGGTGAACACCTGATTTCTAGACAGCGGT
CATNTTAGTGGAGCTGATGATTTCATGGCATCTTTCGGGAAGGCGGTTCA
ATCTTTGAGTGATTTTCCCTCTCGGTGAACACCTGATTTCTAGACAGCGA
TCATCTTTGTATACCGACTTGATGAAACCtcctggtctgtaaaattgatG
GTTATATTTACATCCTCGAGCTGTCTTATGATCTAAGTTTGGAATGTCAG
GGAAAGTGAATGTGGGTCTGCTTTCAAATCTTTTGACCATTATTGACAAG
ATGGTCAACC Run BLAST on NCBI transcript from alignment at sc0000051:698511..700384+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005155 ID=TCONS_00005155|Name=TCONS_00005155|organism=Clytia hemisphaerica|type=transcript|length=1874bp|location=Sequence derived from alignment at sc0000051:698511..700384+ (Clytia hemisphaerica)
TTCGTTTCTACTTCTTCTCATTTGATGATACTAATACCTTAAGAAAACTA
ATTTTCggtggaactaatttttgcggaactaatttttgcgattttggatg
tttaccgcgaaaattagtcccgcgaaatgcaatttctcctaaaaatcctc
aaaaacccCTAGAAATACGAAAGAATATCGGTAAAAAGGGGATGtcaacc
gcaaaaattaattccatAAAATGCGCCAATTTAGTACCGTCGTAATGTGA
AAATAAGTTCCGCGAAAAGGAGTTCTCTTAAGGTAGTCTAGAATATAGAT
ATCTTTTACAATGCTTTATTCCAATATAGATTTTGTCATAACATagttca
atttcaattttaatttttacttCTTTATTCAATATGTCCATTGTTATTCA
GTTGAATCATTTTCCATGACCTTCTTTTCCAAAGAGACCTGCTGCTTCGG
ACGTCGGTATGGTTGTGGGGTCGGTAGTGGGTGGGGTCGATTTGCAGTTA
AAATTATCCCATTCCACAACTTCTGCGTGTATTTTATCACAGTAGGACCC
GTAACACCAATTAGATTCCTCGTCAAAACCTTCGTCCATTGTTTCTCCGG
GTGCATAGAATTTTCCATCATCCCCCAGGCAACCACGGGGTGTTGTCATA
GGAGGGGTTGTCATGGTTTCTGTGGTTGTTGGGGGAGTGGTTTTGCAGTT
GAAATTATCCCAGTGTTGTATTTGGCCATGTTGGTCGCAATATGTCCCAT
AACACCAATTTGTTTGTTCGTCAAATCCATCGTTCATCTTTTCTCCCGGT
GCATAGAATTTTCCATCATCTCCATAGCAACCAAGTGGCGTTGTCATGGG
AGTAGTGGTCGTTGGAGTTGTGGTCGTCATAGGTTCCGTGGTTGGGGGAG
TTGTTTTGCAGTTGAAATTGTCCCATTTAATCACTTGTCCATGTTGATCA
CAATAAGATCCATAACACCAATTTGTTTGTCCATCAAACCCTTCGCTCAT
CTTTTCTCCAGGTGTGTAGAATTTTCCGTCATCTCCATAACAACCATGTG
GCGTTGTCATGGGAGTAGTCGTCGTTGGAGTTGTTGTCGTCAGTGGAGTT
GTTGTCGTTGGTTCAGTAGTAGGTGAGGTCGATTTACAGTTGAAGCTATT
CCATTGAATAACTTGTCCATGTTGATCACAGTATGATCCATAACATCCAT
CGAAATCCTCGGATATCTTTTCCCCAGGCGCATAGATTTTACCGTCATCT
CCATAGCAACCTTGCGGAGGAGTTGTCATGGGCTCAGTCGTCATAGGCTC
CGTGGTTGGGGGAGTCGTTTTGCAGTTGAAATTGTCCCATTGAATAACTT
GTCCATGTTGATTGCAATAGGATCCATAACACCAATTTGTTTGCTCGTCA
AACCCTTCGCTCATCTTTTCTTCAGGTGCATAGAATTTTCCATCATCTCC
ATAGCAACCATGAGGTGTTGTCATGGGAGTAGTTGTCAACGACTTTGTAG
TAGTTGTGACAGGGGGTTTAGTGGAGCTGATGATTTCATGGCATCTTTCG
GGAAGGCGGTTCAATCTTTGAGTGATTTTCCCTCTCGGTGAACACCTGAT
TTCTAGACAGCGGTCATNTTAGTGGAGCTGATGATTTCATGGCATCTTTC
GGGAAGGCGGTTCAATCTTTGAGTGATTTTCCCTCTCGGTGAACACCTGA
TTTCTAGACAGCGATCATCTTTGTATACCGACTTGATGAAACCtcctggt
ctgtaaaattgatGGTTATATTTACATCCTCGAGCTGTCTTATGATCTAA
GTTTGGAATGTCAGGGAAAGTGAATGTGGGTCTGCTTTCAAATCTTTTGA
CCATTATTGACAAGATGGTCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005155-exon-sc0000051-1491911889:698511..699521 | TCONS_00005155-exon-sc0000051-1491911889:698511..699521 | Clytia hemisphaerica | exon |
| TCONS_00005155-exon-sc0000051-1510915933:698511..699521 | TCONS_00005155-exon-sc0000051-1510915933:698511..699521 | Clytia hemisphaerica | exon |
| TCONS_00005155-exon-sc0000051-1575043694:698511..699521 | TCONS_00005155-exon-sc0000051-1575043694:698511..699521 | Clytia hemisphaerica | exon |
| TCONS_00005155-exon-sc0000051-1491911889:699936..700384 | TCONS_00005155-exon-sc0000051-1491911889:699936..700384 | Clytia hemisphaerica | exon |
| TCONS_00005155-exon-sc0000051-1510915933:699936..700384 | TCONS_00005155-exon-sc0000051-1510915933:699936..700384 | Clytia hemisphaerica | exon |
| TCONS_00005155-exon-sc0000051-1575043694:699936..700384 | TCONS_00005155-exon-sc0000051-1575043694:699936..700384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:698511..700384 + |
Blast
The following BLAST results are available for this feature:
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