TCONS_00005153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005153
Unique NameTCONS_00005153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2125

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005153 ID=TCONS_00005153|Name=TCONS_00005153|organism=Clytia hemisphaerica|type=transcript|length=2125bp
ACCTTTTGTTCGAAAGCTGATGAACCAATCAGAATGCTGGATGAAGAATT
ATTTATAATTTCCTGTTTTAATTATACCATCGATCGTTATAAATCTGTAT
TGTTCTTTTTGTTGGCATTGTTTGAGAGTGAAGGATAATTTCAAAGAGAA
GAGAAACTCTTATTCAGTGCAAACCTAAAGTTCTTTGGAGAAAGACGTAT
TGAAATCGAATTCCCTAGAGAGATACCTTAACGTGAATATATTATATTGT
TAGAGAGAGAGACCTTTCTGCAGCGAGATGTTGTGGACGaagatgtttgt
tttgatgacgttttacGTTGGAGCATCACACCAAGTGCTTGAATGGCTAG
ATGAGCATGTACACAAAGTGCAAGATTGGGAGGTGAAGGATTGTGAGAGC
AACCGCGTCCCTTTCAGTAAACGACAACGCAACATTTGCAAACGAAACCT
CGGCTACATGCAATTCCTGGCAAAGTCCATCCCTTCAATCAAACACGAAT
GCAGAGTAGCCTTTACTCATGAACAATGGAATTGTGACGTCATCCTTAAT
TCACCAAACTTTGACCGAAGTATTGATGCAGCCACCAAAGAATCGGCGGC
AGTACAAGCATTGGCAGCGGCTAAGATCCTCCACACCACTATTAACGATT
GTGGCTTGAAAGGGATGTGTAAGAAGTGTGCCGATCGTGAAGAAGTCATC
CCTGCCGACAGACCACGATCAGCAGGTGAAGAGAAACTGGAAGTCATCAT
TCACCAGAGTGGAGCATGTGAAGAAATGTTTCCCCAACCAATGAATTTCA
TCAAACGATTTCTTAAAGTCGGTCGAAAGAAGATGGCAGAATATAAACAA
AGTTGGCCTGAAAAATATGCGCAAGAAAACATAAACTTTCACAATAAACA
AGCCGGCTTAGAGGTAGCTTATGAAACCAGAAGTCCGCGTTGTTATTGTC
CCGGTATTTTTCCGGTTTGTTACACAAAAATTTGTTACACAGCCATGGAT
CACTTTTATAAAGTGGGACGCAAAATCAGAGAAATGTACTACAAAGCAAG
AAAAGTTCGCATTACGGATGATGGTAATTTTGTACCGGTACATGAGCCAA
ACCGACCCATCGAAAAGAAAGAGTTGATTTACGCCGAAGAATTCAATGTT
TGCGATACGAAAGAAGGGTTGAAAGATCGACCGTGCAGTATTGATGAAGA
TATGTTCAAAATCACACGTTATCCTTATTGCAAAGATATGTGCTGCGGTA
AGAATCAATATAAAAGCCGACCCTCCAAACTCATCTGGGAATGTAACTGC
AAATTCAAGTGGTGCTGTGAGGTCAAATGTCAGACTTGCTCTGAAGACCA
AATAAGATATACGTGTACCCAATAAATATTTTGtggaaaggtttttttaa
gtAGTTACGTTTTTATGAAGTGTATATAATTGAGAGATATGTAAATAATA
TATTTGATGGATTTTATAaatagttgtttttttttacaaaagacgtgaaa
aaggtGTGAAGGCCGTTGcatgaaaacgaggctgaaagTGTCGTAAATTA
GGTCTTGTGACAGTTGAAGGGTTAGGGtcattaaaagtttgaaaataagg
cGCAATTAAATAGTGACCGGAAAATAATGACTTGATGTTAATCTTCATTT
CAAAAAGCCTTTCCGCTATCCAAACCTCAACTAATTGCTTACAAAAGCTA
AATTACTATCCTCATTAGAACCCAGTCCTTTTCAACGCGCACACATGAGT
GATAAACAAGGGCCCAGACCTCTTTCATCCGTTTCTCGTCATTTTCTTTT
ATAGAATATCATGTGTTTTAGTAtggtatttttatttgaaataaaaagtt
tctGAAGAATAAATTTATCCAAAGTTTATTGAATTTGTCCGCTTCACGAC
ATCCTGATGGATTAAAGGATCATGCAACAGGTCACGTCTCTCCTATATCA
CGTGGCacgaaagagaaagagaaattaCCTCTTCAATAACAGATTTAAGA
ACGCAAAAGCTTTGACGAAAAATGCTGAAATAGGAAGATAAACATGACCC
GGTTTTCTGTCCCTTCGGTCTCCGTGTCGttcttgtccatttttctaaga
aataaaTTGAGCCTgggggaggggt
Run BLAST on NCBI

protein sequence of unclassified Wnt protein X3

>TCONS_00005153-protein ID=TCONS_00005153-protein|Name=unclassified Wnt protein X3|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MLWTKMFVLMTFYVGASHQVLEWLDEHVHKVQDWEVKDCESNRVPFSKRQ
RNICKRNLGYMQFLAKSIPSIKHECRVAFTHEQWNCDVILNSPNFDRSID
AATKESAAVQALAAAKILHTTINDCGLKGMCKKCADREEVIPADRPRSAG
EEKLEVIIHQSGACEEMFPQPMNFIKRFLKVGRKKMAEYKQSWPEKYAQE
NINFHNKQAGLEVAYETRSPRCYCPGIFPVCYTKICYTAMDHFYKVGRKI
REMYYKARKVRITDDGNFVPVHEPNRPIEKKELIYAEEFNVCDTKEGLKD
RPCSIDEDMFKITRYPYCKDMCCGKNQYKSRPSKLIWECNCKFKWCCEVK
CQTCSEDQIRYTCTQ
Run BLAST on NCBI

transcript from alignment at sc0000051:671078..673697+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005153 ID=TCONS_00005153|Name=TCONS_00005153|organism=Clytia hemisphaerica|type=transcript|length=2620bp|location=Sequence derived from alignment at sc0000051:671078..673697+ (Clytia hemisphaerica)
ACCTTTTGTTCGAAAGCTGATGAACCAATCAGAATGCTGGATGAAGAATT
ATTTATAATTTCCTGTTTTAATTATACCATCGATCGTTATAAATCTGTAT
TGTTCTTTTTGTTGGCATTGTTTGAGAGTGAAGGATAATTTCAAAGAGAA
GAGAAACTCTTATTCAGTGCAAACCTAAAGTTCTTTGGAGAAAGACGTAT
TGAAATCGAATTCCCTAGAGAGATACCTTAACGTGAATATATTATATTGT
TAGAGAGAGAGACCTTTCTGCAGCGAGATGTTGTGGACGaagatgtttgt
tttgatgacgttttacGTTGGAGCATCACACCAAGTGCTTGAATGGCTGT
AAGTCCCCTTTCTTTGTTTCCAAATTTCTATTTATCGTGaggaaaaatct
aattttcaaaattggctTTCCATTTTGAGCTTGGCTAGTAGCCAGAGGCT
TTTCATCGAATTGGCACGAGTCCATAGATTTGTCTCCTGACtaataatta
ttttgttttcccTCCCATAGAGATGAGCATGTACACAAAGTGCAAGATTG
GGAGGTGAAGGATTGTGAGAGCAACCGCGTCCCTTTCAGTAAACGACAAC
GCAACATTTGCAAACGAAACCTCGGCTACATGCAATTCCTGGCAAAGTCC
ATCCCTTCAATCAAACACGAATGCAGAGTAGCCTTTACTCATGAACAATG
GAATTGTGACGTCATCCTTAATTCACCAAACTTTGACCGAAGTATTGATG
CAGGTAATTAATTAACAGATCCTTTAAACAAAGCCTGGCAATGAATACAT
CAAACCAATAGCTAACAAACAGCAAAAAGTCATTTACTTCTAATAACCAG
CCTCAACAAATTTTTGACTATTAATTATCAGTTTCTCTAATATTCAAACT
CATTTTATTTGTATAGCCACCAAAGAATCGGCGGCAGTACAAGCATTGGC
AGCGGCTAAGATCCTCCACACCACTATTAACGATTGTGGCTTGAAAGGGA
TGTGTAAGAAGTGTGCCGATCGTGAAGAAGTCATCCCTGCCGACAGACCA
CGATCAGCAGGTGAAGAGAAACTGGAAGTCATCATTCACCAGAGTGGAGC
ATGTGAAGAAATGTTTCCCCAACCAATGAATTTCATCAAACGATTTCTTA
AAGTCGGTCGAAAGAAGATGGCAGAATATAAACAAAGTTGGCCTGAAAAA
TATGCGCAAGAAAACATAAACTTTCACAATAAACAAGCCGGCTTAGAGGT
AAGTTACCATGACAACCTATTTGAAAGGAACTGCTGATGAGACACATCAG
CTCTATCTTCCTACACAACGGAAACACATCTATCTTTCCTCAACATCGTG
TTATTCTGATCAACAAGAACATTATATTCACCAAATTATCCGTTCTTTCT
ATTCATAGGTAGCTTATGAAACCAGAAGTCCGCGTTGTTATTGTCCCGGT
ATTTTTCCGGTTTGTTACACAAAAATTTGTTACACAGCCATGGATCACTT
TTATAAAGTGGGACGCAAAATCAGAGAAATGTACTACAAAGCAAGAAAAG
TTCGCATTACGGATGATGGTAATTTTGTACCGGTACATGAGCCAAACCGA
CCCATCGAAAAGAAAGAGTTGATTTACGCCGAAGAATTCAATGTTTGCGA
TACGAAAGAAGGGTTGAAAGATCGACCGTGCAGTATTGATGAAGATATGT
TCAAAATCACACGTTATCCTTATTGCAAAGATATGTGCTGCGGTAAGAAT
CAATATAAAAGCCGACCCTCCAAACTCATCTGGGAATGTAACTGCAAATT
CAAGTGGTGCTGTGAGGTCAAATGTCAGACTTGCTCTGAAGACCAAATAA
GATATACGTGTACCCAATAAATATTTTGtggaaaggtttttttaagtAGT
TACGTTTTTATGAAGTGTATATAATTGAGAGATATGTAAATAATATATTT
GATGGATTTTATAaatagttgtttttttttacaaaagacgtgaaaaaggt
GTGAAGGCCGTTGcatgaaaacgaggctgaaagTGTCGTAAATTAGGTCT
TGTGACAGTTGAAGGGTTAGGGtcattaaaagtttgaaaataaggcGCAA
TTAAATAGTGACCGGAAAATAATGACTTGATGTTAATCTTCATTTCAAAA
AGCCTTTCCGCTATCCAAACCTCAACTAATTGCTTACAAAAGCTAAATTA
CTATCCTCATTAGAACCCAGTCCTTTTCAACGCGCACACATGAGTGATAA
ACAAGGGCCCAGACCTCTTTCATCCGTTTCTCGTCATTTTCTTTTATAGA
ATATCATGTGTTTTAGTAtggtatttttatttgaaataaaaagtttctGA
AGAATAAATTTATCCAAAGTTTATTGAATTTGTCCGCTTCACGACATCCT
GATGGATTAAAGGATCATGCAACAGGTCACGTCTCTCCTATATCACGTGG
CacgaaagagaaagagaaattaCCTCTTCAATAACAGATTTAAGAACGCA
AAAGCTTTGACGAAAAATGCTGAAATAGGAAGATAAACATGACCCGGTTT
TCTGTCCCTTCGGTCTCCGTGTCGttcttgtccatttttctaagaaataa
aTTGAGCCTgggggaggggt

Coding sequence (CDS) from alignment at sc0000051:671078..673697+

>TCONS_00005153 ID=TCONS_00005153|Name=TCONS_00005153|organism=Clytia hemisphaerica|type=CDS|length=4392bp|location=Sequence derived from alignment at sc0000051:671078..673697+ (Clytia hemisphaerica)
ATGTTGTGGACGaagatgtttgttttgatgacgttttacGTTGGAGCATC
ACACCAAGTGCTTGAATGGCTAGATGAGCATGTACACAAAGTGCAAGATT
GGGAGGTGAAGGATTGTGAGAGCAACCGCGTCCCTTTCAGTAAACGACAA
CGCAACATTTGCAAACGAAACCTCGGCTACATGCAATTCCTGGCAAAGTC
CATCCCTTCAATCAAACACGAATGCAGAGTAGCCTTTACTCATGAACAAT
GGAATTGTGACGTCATCCTTAATTCACCAAACTTTGACCGAAGTATTGAT
GCAGCCACCAAAGAATCGGCGGCAGTACAAGCATTGGCAGCGGCTAAGAT
CCTCCACACCACTATTAACGATTGTGGCTTGAAAGGGATGTGTAAGAAGT
GTGCCGATCGTGAAGAAGTCATCCCTGCCGACAGACCACGATCAGCAGGT
GAAGAGAAACTGGAAGTCATCATTCACCAGAGTGGAGCATGTGAAGAAAT
GTTTCCCCAACCAATGAATTTCATCAAACGATTTCTTAAAGTCGGTCGAA
AGAAGATGGCAGAATATAAACAAAGTTGGCCTGAAAAATATGCGCAAGAA
AACATAAACTTTCACAATAAACAAGCCGGCTTAGAGGTAGCTTATGAAAC
CAGAAGTCCGCGTTGTTATTGTCCCGGTATTTTTCCGGTTTGTTACACAA
AAATTTGTTACACAGCCATGGATCACTTTTATAAAGTGGGACGCAAAATC
AGAGAAATGTACTACAAAGCAAGAAAAGTTCGCATTACGGATGATGGTAA
TTTTGTACCGGTACATGAGCCAAACCGACCCATCGAAAAGAAAGAGTTGA
TTTACGCCGAAGAATTCAATGTTTGCGATACGAAAGAAGGGTTGAAAGAT
CGACCGTGCAGTATTGATGAAGATATGTTCAAAATCACACGTTATCCTTA
TTGCAAAGATATGTGCTGCGGTAAGAATCAATATAAAAGCCGACCCTCCA
AACTCATCTGGGAATGTAACTGCAAATTCAAGTGGTGCTGTGAGGTCAAA
TGTCAGACTTGCTCTGAAGACCAAATAAGATATACGTGTACCCAATAAAT
GTTGTGGACGaagatgtttgttttgatgacgttttacGTTGGAGCATCAC
ACCAAGTGCTTGAATGGCTAGATGAGCATGTACACAAAGTGCAAGATTGG
GAGGTGAAGGATTGTGAGAGCAACCGCGTCCCTTTCAGTAAACGACAACG
CAACATTTGCAAACGAAACCTCGGCTACATGCAATTCCTGGCAAAGTCCA
TCCCTTCAATCAAACACGAATGCAGAGTAGCCTTTACTCATGAACAATGG
AATTGTGACGTCATCCTTAATTCACCAAACTTTGACCGAAGTATTGATGC
AGCCACCAAAGAATCGGCGGCAGTACAAGCATTGGCAGCGGCTAAGATCC
TCCACACCACTATTAACGATTGTGGCTTGAAAGGGATGTGTAAGAAGTGT
GCCGATCGTGAAGAAGTCATCCCTGCCGACAGACCACGATCAGCAGGTGA
AGAGAAACTGGAAGTCATCATTCACCAGAGTGGAGCATGTGAAGAAATGT
TTCCCCAACCAATGAATTTCATCAAACGATTTCTTAAAGTCGGTCGAAAG
AAGATGGCAGAATATAAACAAAGTTGGCCTGAAAAATATGCGCAAGAAAA
CATAAACTTTCACAATAAACAAGCCGGCTTAGAGGTAGCTTATGAAACCA
GAAGTCCGCGTTGTTATTGTCCCGGTATTTTTCCGGTTTGTTACACAAAA
ATTTGTTACACAGCCATGGATCACTTTTATAAAGTGGGACGCAAAATCAG
AGAAATGTACTACAAAGCAAGAAAAGTTCGCATTACGGATGATGGTAATT
TTGTACCGGTACATGAGCCAAACCGACCCATCGAAAAGAAAGAGTTGATT
TACGCCGAAGAATTCAATGTTTGCGATACGAAAGAAGGGTTGAAAGATCG
ACCGTGCAGTATTGATGAAGATATGTTCAAAATCACACGTTATCCTTATT
GCAAAGATATGTGCTGCGGTAAGAATCAATATAAAAGCCGACCCTCCAAA
CTCATCTGGGAATGTAACTGCAAATTCAAGTGGTGCTGTGAGGTCAAATG
TCAGACTTGCTCTGAAGACCAAATAAGATATACGTGTACCCAATAAATGT
TGTGGACGaagatgtttgttttgatgacgttttacGTTGGAGCATCACAC
CAAGTGCTTGAATGGCTAGATGAGCATGTACACAAAGTGCAAGATTGGGA
GGTGAAGGATTGTGAGAGCAACCGCGTCCCTTTCAGTAAACGACAACGCA
ACATTTGCAAACGAAACCTCGGCTACATGCAATTCCTGGCAAAGTCCATC
CCTTCAATCAAACACGAATGCAGAGTAGCCTTTACTCATGAACAATGGAA
TTGTGACGTCATCCTTAATTCACCAAACTTTGACCGAAGTATTGATGCAG
CCACCAAAGAATCGGCGGCAGTACAAGCATTGGCAGCGGCTAAGATCCTC
CACACCACTATTAACGATTGTGGCTTGAAAGGGATGTGTAAGAAGTGTGC
CGATCGTGAAGAAGTCATCCCTGCCGACAGACCACGATCAGCAGGTGAAG
AGAAACTGGAAGTCATCATTCACCAGAGTGGAGCATGTGAAGAAATGTTT
CCCCAACCAATGAATTTCATCAAACGATTTCTTAAAGTCGGTCGAAAGAA
GATGGCAGAATATAAACAAAGTTGGCCTGAAAAATATGCGCAAGAAAACA
TAAACTTTCACAATAAACAAGCCGGCTTAGAGGTAGCTTATGAAACCAGA
AGTCCGCGTTGTTATTGTCCCGGTATTTTTCCGGTTTGTTACACAAAAAT
TTGTTACACAGCCATGGATCACTTTTATAAAGTGGGACGCAAAATCAGAG
AAATGTACTACAAAGCAAGAAAAGTTCGCATTACGGATGATGGTAATTTT
GTACCGGTACATGAGCCAAACCGACCCATCGAAAAGAAAGAGTTGATTTA
CGCCGAAGAATTCAATGTTTGCGATACGAAAGAAGGGTTGAAAGATCGAC
CGTGCAGTATTGATGAAGATATGTTCAAAATCACACGTTATCCTTATTGC
AAAGATATGTGCTGCGGTAAGAATCAATATAAAAGCCGACCCTCCAAACT
CATCTGGGAATGTAACTGCAAATTCAAGTGGTGCTGTGAGGTCAAATGTC
AGACTTGCTCTGAAGACCAAATAAGATATACGTGTACCCAATAAATGTTG
TGGACGaagatgtttgttttgatgacgttttacGTTGGAGCATCACACCA
AGTGCTTGAATGGCTAGATGAGCATGTACACAAAGTGCAAGATTGGGAGG
TGAAGGATTGTGAGAGCAACCGCGTCCCTTTCAGTAAACGACAACGCAAC
ATTTGCAAACGAAACCTCGGCTACATGCAATTCCTGGCAAAGTCCATCCC
TTCAATCAAACACGAATGCAGAGTAGCCTTTACTCATGAACAATGGAATT
GTGACGTCATCCTTAATTCACCAAACTTTGACCGAAGTATTGATGCAGCC
ACCAAAGAATCGGCGGCAGTACAAGCATTGGCAGCGGCTAAGATCCTCCA
CACCACTATTAACGATTGTGGCTTGAAAGGGATGTGTAAGAAGTGTGCCG
ATCGTGAAGAAGTCATCCCTGCCGACAGACCACGATCAGCAGGTGAAGAG
AAACTGGAAGTCATCATTCACCAGAGTGGAGCATGTGAAGAAATGTTTCC
CCAACCAATGAATTTCATCAAACGATTTCTTAAAGTCGGTCGAAAGAAGA
TGGCAGAATATAAACAAAGTTGGCCTGAAAAATATGCGCAAGAAAACATA
AACTTTCACAATAAACAAGCCGGCTTAGAGGTAGCTTATGAAACCAGAAG
TCCGCGTTGTTATTGTCCCGGTATTTTTCCGGTTTGTTACACAAAAATTT
GTTACACAGCCATGGATCACTTTTATAAAGTGGGACGCAAAATCAGAGAA
ATGTACTACAAAGCAAGAAAAGTTCGCATTACGGATGATGGTAATTTTGT
ACCGGTACATGAGCCAAACCGACCCATCGAAAAGAAAGAGTTGATTTACG
CCGAAGAATTCAATGTTTGCGATACGAAAGAAGGGTTGAAAGATCGACCG
TGCAGTATTGATGAAGATATGTTCAAAATCACACGTTATCCTTATTGCAA
AGATATGTGCTGCGGTAAGAATCAATATAAAAGCCGACCCTCCAAACTCA
TCTGGGAATGTAACTGCAAATTCAAGTGGTGCTGTGAGGTCAAATGTCAG
ACTTGCTCTGAAGACCAAATAAGATATACGTGTACCCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002938XLOC_002938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005153-exon-sc0000051-1491911889:671078..671425TCONS_00005153-exon-sc0000051-1491911889:671078..671425Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1510915933:671078..671425TCONS_00005153-exon-sc0000051-1510915933:671078..671425Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1575043694:671078..671425TCONS_00005153-exon-sc0000051-1575043694:671078..671425Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1491911889:671598..671830TCONS_00005153-exon-sc0000051-1491911889:671598..671830Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1510915933:671598..671830TCONS_00005153-exon-sc0000051-1510915933:671598..671830Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1575043694:671598..671830TCONS_00005153-exon-sc0000051-1575043694:671598..671830Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1491911889:671994..672325TCONS_00005153-exon-sc0000051-1491911889:671994..672325Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1510915933:671994..672325TCONS_00005153-exon-sc0000051-1510915933:671994..672325Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1575043694:671994..672325TCONS_00005153-exon-sc0000051-1575043694:671994..672325Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1491911889:672486..673697TCONS_00005153-exon-sc0000051-1491911889:672486..673697Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1510915933:672486..673697TCONS_00005153-exon-sc0000051-1510915933:672486..673697Clytia hemisphaericaexon
TCONS_00005153-exon-sc0000051-1575043694:672486..673697TCONS_00005153-exon-sc0000051-1575043694:672486..673697Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
unclassified Wnt protein X3TCONS_00005153-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:671078..673697 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0370331	0.0180566	0.167723	0.225625	0.274677	0.0986606	0	0.0891474	0	0.0193275	0	0.135651	58.68	71.4395	76.3445	77.3031	5.90763	2.33657	1.61405	1.586	0.0179029	0	0.212307	0.154415	0.0198804	0.0177428	1.09177	0.0270968	0.0616558	0.272209
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005817Wnt
Vocabulary: Molecular Function
TermDefinition
GO:0005102receptor binding
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0016055Wnt signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016055 Wnt signaling pathway
cellular_component GO:0005576 extracellular region
molecular_function GO:0005102 receptor binding
Blast
[Close]
BLAST of TCONS_00005153 vs. Swiss-Prot (Human)
Match: WNT5A (Protein Wnt-5a OS=Homo sapiens GN=WNT5A PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.728e-28
Identity = 87/332 (26.20%), Postives = 143/332 (43.07%), Query Frame = 2 
Query:  398 SNRVPFSKRQRNICKRNLGYMQFLAKSIPSIKHECRVAFTHEQWNCDVILNSPNFDRSIDAATKESXXXXXXXXXKILHTTINDCGLKGMCKKCADREEVIPADRPRSAGEEKLEVIIHQSGACEEMFPQPMNFIKRFLKVGRKKMAEYKQSWPEKYAQENINFHNKQAGLEVAYETRSPRCYCPGIFPVCYTKICYTAMDHFYKVGRKIREMYYKARKVRITDDGNFVPVHEPNRPIEKKELIYAEEF------NVCDTKEGLKDRPCS-IDEDMFKITRYPYCKDMCCGK--NQYKSRPSKLIWECNCKFKWCCEVKCQTCSEDQIRYTC 1366
            S     S+ Q+ +C     +MQ++ +   +   EC+  F H +WNC  + N+  F R +   ++E+A   A++AA +++     C  +G    C       P D PR              G C +       F K F+    ++    K S+    A+  +N HN +AG    Y      C C G+   C  K C+  +  F KVG  ++E Y  A  +R+   G  V V+        ++L+Y +        N      G + R C+   E M        C+ MCCG+  +Q+K+  ++    C+CKF WCC VKC+ C+E   ++ C
Sbjct:   70 SQLAGLSQGQKKLCHLYQDHMQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVVNAMSRAC-REGELSTCGCSRAARPKDLPRD----------WLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYES--ARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGM------DGCELMCCGRGYDQFKTVQTE---RCHCKFHWCCYVKCKKCTEIVDQFVC 379
The following BLAST results are available for this feature:
BLAST of TCONS_00005153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT5A4.728e-2826.20Protein Wnt-5a OS=Homo sapiens GN=WNT5A PE=1 SV=2[more]
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