TCONS_00005145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005145
Unique NameTCONS_00005145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005145 ID=TCONS_00005145|Name=TCONS_00005145|organism=Clytia hemisphaerica|type=transcript|length=1762bp
ACCACATTTGTACCTTCACAAGTTTCAACTTGTCCATAAAAGGAACGATC
CATATGGAATCAAAATGCAGAGAATGGAATCACTGTTATGAATGGGCTAA
GAAAGAATAACCCTTTGTAAAACACCCACATGTCTTTGATTACCGGTGAG
CCAAAAGTCGGTTAATTTAAACTAGCAGGGTGCTTTGATTAGCAAACAAA
GCATCTCGCAGTGAAGGAATTACAAACCCTCCGAAGCTTCGCCTATATAA
AGTTCTCATGAGTGTAGTGAACCAGAAAGTCAAAGTATTCGAACGGACAA
ACAAGACTCAAAGTGTGGAAcatcaaaatatcaaataaagaaagagaaat
gttgaaaatgtTGGCGTTGACCTTTTGCTGGATTGGGATATTGGAAGCTC
ACTCATGGATGACCTGTCCGCCATCTTTTGATAACAAAGTCATTCAAAGA
GGAGGTATCCAAGGCAATTGGTGTGAGACACTCAGAGGTGGAAGTCCAAC
GACGCACGTCAAAGCTGGCGACAGGTTGAAGGTTGGATGGACATCGAACA
ACCATGCAGGAGGTTGGGTTCGAATTTCGTTAGTGCCATGGGGGTGGATG
GATTTGGATGCAGGAGATAAAGAAGTGGAGTTGAAAAGAAACGTGATGAA
GATAGCGTGCTATGGTCACGATCAACGTGAGGGGAAAACACGGAATGGTG
ATTGCGTGCATCCTTGTGATGGGAGGCCTGGTTGCGATTATCAAGCTGAC
GATAAAGACATTCATCGTTTCGACACAACAATCGGCATCCCTACCAACCT
TGAAGACGGTGATTACGTTCTCCAAGTCACAATGCTTGTCGGTAACACCG
GAACACCGTACAACAGTTGCGGGAGGCTTCGCATTTCCGGTGGTAACCCG
AACTTCGATTGTGTAAACAGTGATCCAGTTTTGGTTTATGATTGTTTAAA
AAGTGGAGGACCAAGACCTGAAAATTCGATCGGCGTTGGGACGAAGAATG
GAGATTTCTGTTACAATCTGGATGGCACAAAAGGTTCAATTGATGCTCGC
ATCTCACAGATTCCAATCAATGTGGAATGCGACGCTCGATTGTCGTGTTT
GAACAGTGTCAAAGCGGCTGAATGCGCCAAAGATCAAACTATGGGTGAAA
TCGTGGGCGCCAGAGGGCCGTTTCCGAAGCATCCGGTATGCCGTGCGTAC
AATGTATTGGAGAAATTAGCACCTTCGTGTAAAGATGGCTTGAAGAATGG
AGATGAAGAGGGCGTGGATTGTGGCGGAGAGAATTGTGGGGCGTGTCCAA
CCGATCCCTCCCCAACTGTTCCTGCTACTGCTTACTATTCAGCTATCGGT
CAAGTGTCACAATTGTGGTGGGGTAGTGGGCAGATCACCATCAAAGTGTC
CATCAGAAAAAGAATCAGCTCCTCGCAATGCTGGCAACTACTTTTACAGT
TCCGAAATACAATCAAAATGACAGCCCATGCGTGGGGCGATGGAATGTTG
GTCAACCAAGGAGAAGCAGggcGTACAATGATTTTCGAGGCGTCCAATCA
AGGGCGGTCATGGTCGAGCGGGAGCACCATATCAGTAACTTTCCCAATCA
ACAAAGGATCCATCAATGATGATGAATGGACGGATGGAAATATGAAGTTC
AATTCCGCCATCTTTGAAGTATTCGACGATACAAATGAATGTAAAGGCAT
CAAAGTCAACCCAAATTGAGCAatggaaaatcttcaaaaataattcaaag
attTGATGCTAC
Run BLAST on NCBI

transcript from alignment at sc0000051:607504..613621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005145 ID=TCONS_00005145|Name=TCONS_00005145|organism=Clytia hemisphaerica|type=transcript|length=6118bp|location=Sequence derived from alignment at sc0000051:607504..613621+ (Clytia hemisphaerica)
ACCACATTTGTACCTTCACAAGTTTCAACTTGTCCATAAAAGGAACGATC
CATATGGAATCAAAATGCAGAGAATGGAATCACTGTTATGAATGGGCTAA
GAAAGAATAACCCTTTGTAAAACACCCACATGTCTTTGATTACCGGTGAG
CCAAAAGTCGGTTAATTTAAACTAGCAGGGTGCTTTGATTAGCAAACAAA
GCATCTCGCAGTGAAGGAATTACAAACCCTCCGAAGCTTCGCCTATATAA
AGTTCTCATGAGTGTAGTGAACCAGAAAGTCAAAGTATTCGAACGGACAA
ACAAGACTCAAAGTGTGGAAcatcaaaatatcaaataaagaaagagaaat
gttgaaaatgtTGGCGTTGACCTTTTGCTGGATTGGGATATTGGAAGCTC
ACTCATGGATGACCTGTCCGCCGTAAGATCATTTTTATCGATCGATGATT
CGAATTCTCCACTAGATGAAAGTAATGCTAGAGTTCAAGGGTTTGTTGTT
GTGGTCTCGCACAGAAACATTCATTGCACCAAATTGGTTTCATTGCTTGT
TTTCGTAAACTTTACTTTATGGGTTCTCTTCCTTTTGTTCTTCAGATCTT
TTGATAACAAAGTCATTCAAAGAGGAGGTATCCAAGGCAATTGGTGTGAG
ACACTCAGAGGTAAGTTTTTTGTCCTTATATTCATCCTTCAATTTCATTC
CAAGAAATTTAAGTCCGCTGAGAGCTCCTTTTTCAATAGCTGATTTGTCT
GAAATTAAGAAAAGGACATTACTTTTCGCTTGAGGTACCGAAACAGTTTA
CACCTCATAAAATGTATTGATTGATTTTAGGTGGAAGTCCAACGACGCAC
GTCAAAGCTGGCGACAGGTTGAAGGTGAATTCATCCCgctctttttttcg
aaaaattttctttgtcacTCATTGAAATTTATTCTACATCTTTTTCGAAG
TAGGTAAAAAATATGCTATCAATTAAAAtaccgggtgtctctgaaaaaac
tcccccctgtttgattcaaaagtgcgaaaaagtgaaaaaatatattagct
tgattttttcgaaatcgtttagaggagggtttaacttaaattttggtata
tcaaactttaaaattgcgaaaaaagacgaaaaaacaggATATCAAATCTT
TTGTTAGAGAAAAACACACTCAAACTTTCTCTTCTCCACTCAAATAGACT
CGCTAAGCTTTGGAAACTTTTGGaaacattttgataaaagtttgttGCTT
GTTTAAACTTCATGCTCATTAATGAATCCAAAAGGAGCTCTAAATTggca
ataaaaatcattaaaacgaataataaaacaaaaaagatgtACAGAAgttc
aaaagtaaaactttacTGTCAATAAAGTACAGTGTTTTCTTGTCTAattt
gataccctgttttttcgtcttttttcgctctttttgaaaacaattttttt
actctttttgatttgtcataacttttggtctaatgaagcaattttaaagt
ttgatataccaaaatttaagttaaaccctcctctaaacgatttcgaaaaa
atcaagctaatatattttttcactttttctcaattttgaatcaaacaggg
ggaagttttttcagagacacccggtaCGTAATCAATTAGTATGTCTATTT
ATCTCTTTATTACAATTAAGGAGGTCGTGGTtgattgaaattaattttac
tCTGATTATTAGGTTGGATGGACATCGAACAACCATGCAGGAGGTTGGGT
TCGAATTTCGTTAGTGCCATGGGGGTGGATGGATTTGGATGCAGGAGATA
AAGAAGTGGAGTTGAAAAGAAACGTGATGAAGATAGCGTGCTATGGTCAC
GATCAACGTGAGGGGAAAACACGGAATGGTGATTGCGTGCATCCTTGTGA
TGGGAGGCCTGGTTGCGATTATCAAGCTGGTCAGTATTTTATTCATGCAT
CAGCGCTTTTTTGTTTGAGgaggaattttcctttttccatACATGCATCA
TCCTGCAAATACTTTTTGAGCTCCTTTTCACAAGTCTACATAACCCTAAA
AAACTAGATACTATAGAAAAGCGAACCTTGAGAAACGGTAGTCTCGAGCT
CTGATTGGCACTAACCTAAGCAATCGAAACTGTTTTCAACCATTCATGAT
TGCAAGAAAACATGAATTCCAACCTAGGAGTTTCATACACACAATCTTTC
TACATCTGGATACTGCCCTTTGATTTGTAGAGATAACGTATAAGCTTCTC
CCACCATGAAGTGACTTGatcaaattgaaacaatataTAAACCATTTTCT
CCATCCCTTCTAGACGATAAAGACATTCATCGTTTCGACACAACAATCGG
CATCCCTACCAACCTTGAAGACGGTGATTACGTTCTCCAAGTCACAATGC
TTGTCGGTAACACCGGAACACCGTACAACAGTTGCGGGAGGCTTCGCATT
TCCGGTGGTAACCCGAACTTCGATTGTGTAAACAGTGATCCAGTTTTGGT
TTATGATTGTTTAAAAAGTGGAGGACCAAGACCTGAAAATTCGATCGGCG
TTGGTAAGTCATTCTTCACCAAAACATTATGTGAAATTATGTGAATACAA
CTTTAACAGTTAGATAACCAGGAACATTTTTGGTCAGGCTATCATTACAC
ATCTCTCTCTATAACGTGTGAGCTTTCATAAAGACcgctaaaaattttct
ttggcaCGTGGAGAAGAAGTTGTTTAAAGTTTCTGAGCTGAGGATATTAG
AAAGCGTGTTTGGGAAGCCAACACAAGCACTTAATACTATTCTGACGCAG
TCTTACACTCTTTCCATTGTAGGGACGAAGAATGGAGATTTCTGTTACAA
TCTGGATGGCACAAAAGGTTCAATTGATGCTCGCATCTCACAGATTCCAA
TCAATGTGGAATGCGACGCTCGATTGTCGTGTTTGAACAGTGTCAAAGCG
GCTGAATGCGCCAAAGATCAAACTATGGGTGAAATCGTGGTATGTTTTCC
TCTATCTTAAAATAAGAGAGAGTGAGTGAGTGCCCTAGATATTATTCTTC
CAGTAAGCGTCCATAGGGATAAACCAAGATCAGCGGAGCTCAGTTAGCTC
AATTGAATCAAACCAAGTGAAGCAGAAATGTCCTATCAACTTGAAGTAGA
AGTTATCTCAAcctttttctgttgtttttttggCACAGGGCGCCAGAGGG
CCGTTTCCGAAGCATCCGGTATGCCGTGCGTACAATGTATTGGAGAAATT
AGCACCTTCGTGTAAAGATGGCTTGAAGAATGGAGATGAAGAGGGCGTGG
ATTGTGGCGGAGAGAATTGTGGGGCGTGTCCAACCGATCCCTCCCCAACT
GTTCCTGCTACTGCTTACTATTCGTAAGTTTGCTTTGCTTTCATTTGTTT
AAGCGAATAGTTTTTTATGGTTGGAACTTTCTTTGAGTTTCATTTGTTTT
AACGAATAGTTTTTTATGGTTGGAACTTTCTTTGAGTTTCATTTGTTTTA
ACGAATAGTTTTTTATGGTTGGAACTTCTTTGAGTTTCATTTGTTTTAAC
GAATAGTTTTTTATGGTTGGAACTTTCTTTGAGTTTCATTTGTTTTAACG
AATAGTTTTTTATGGTTGGAACTTCTTTGAGTTTCATTTGTTTTAACGAA
TAGTTTTTTATGGTTGGAACTTTCTTTGAGTTTCATTTGTTTTAACGAAT
AGTTTTTTATGGTTGGAACTTCTTTGAGTTTCATTTGTTTTAACGAATAG
TTTTTTATGGTTGGAACTTTCTTTGAGTTTCATTTGTTTTAACGAATAGT
TTTTTATGGTTGGAACTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTT
TTTATGGTTGGAACTTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTT
TTATGGTTGGAACTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTT
ATGGTTGGAACTTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTA
TGGTTGGAACTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATG
GTTGGAACTTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGG
TTGGAACTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTT
GGAACTTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTG
GAACTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGA
ACTTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAA
CTTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACT
TTCTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTT
CTTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTTC
TTTGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTCTT
TGAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTTCTTT
GAGTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTCTTTGA
GTTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTTCTTTGAG
TTTCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTCTTTGAGTT
TCATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTTCTTTGAGTTT
CATTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTCTTTGAGTTTCA
TTTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTTCTTTGAGTTTCAT
TTGTTTTAACGAATAGTTTTTTATGGTTGGAACTTCTTTGAGTTTCATTT
GTTTTAACGAATAGTTTTTTATGGTTGGAACTTTCTTTGAGTTTCATTTG
TTTTAACGAATAGTTTTTTATGGTTGGAACTTCTTTGAGTTTCATTTGTT
TTAACGAATAGTTTTTTATGGTTGGAACTTTCTTTGAATGTGTTGTTAGA
AAGGCGAGGTAAAAACTCCCATTCACGATCggaaataaaatcaataaacg
tTGTCAGGGATGAGTCCTAGGCTTCACAAAACCGAATGGAAATAATAATA
AAGgagtcaataatgtaattatCATTTCAGCTGGTTATAAATAAATGTTT
GCACGAGACGagaaataattttcctttttttttatttcgctTCAGAGCTA
TCGGTCAAGTGTCACAATTGTGGTGGGGTAGTGGGCAGATCACCATCAAA
GTGTCCATCAGAAAAAGAATCAGCTCCTCGCAATGCTGGCAACTACTTTT
ACAGTTCCGAAATACAATCAAAATGACAGCCCATGCGTGGGGCGATGGAA
TGTTGGTCAACCAAGGAGAAGCAGGTCAGAGCTTTTTCACACCTTCTCTA
AGAAATTATGGTTAAGGATCGAAGAACGTGCTCGAAATAGATGAACAGTG
TTCATTTCTTTTCCATGCAAAGCCAGCATCCTTTAAAGGTTGAAATTCGA
ACAGGATAACGTCCAACTAACGTTATGAAACGGGCGTTAGTCAGACATTT
GGCTTTGTGCCAATCGTGGGAAAACATGAACAAAAACAACATTCAtacct
ttcttttttttaaagggcGTACAATGATTTTCGAGGCGTCCAATCAAGGG
CGGTCATGGTCGAGCGGGAGCACCATATCAGTAACTTTCCCAATCAACAA
AGGATCCATCAATGATGATGAATGGACGGATGGAAATATGAAGTTCAATT
CCGCCATCTTTGAAGTATTCGACGATACAAATGTATGTTGACGTTTCTAC
TCTAAATAAAAAATGGTTCATATTTTACTATTACAGTATTTAGAAGTGAT
TTGTTactcaaattataaaaatgtgtCGAGACAAAATTGTCTTGATAATG
ACTGAAAATTCCACACCTTCAAAACAAGcaactcaattttcaaaaatcct
tggtgatttaaatttcaaaattttcacattttcatcATACAGGAATGTAA
AGGCATCAAAGTCAACCCAAATTGAGCAatggaaaatcttcaaaaataat
tcaaagattTGATGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002934XLOC_002934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005145-exon-sc0000051-1491911889:607504..607925TCONS_00005145-exon-sc0000051-1491911889:607504..607925Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:607504..607925TCONS_00005145-exon-sc0000051-1510915933:607504..607925Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:607504..607925TCONS_00005145-exon-sc0000051-1575043694:607504..607925Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:608099..608163TCONS_00005145-exon-sc0000051-1491911889:608099..608163Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:608099..608163TCONS_00005145-exon-sc0000051-1510915933:608099..608163Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:608099..608163TCONS_00005145-exon-sc0000051-1575043694:608099..608163Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:608334..608377TCONS_00005145-exon-sc0000051-1491911889:608334..608377Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:608334..608377TCONS_00005145-exon-sc0000051-1510915933:608334..608377Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:608334..608377TCONS_00005145-exon-sc0000051-1575043694:608334..608377Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:609216..609432TCONS_00005145-exon-sc0000051-1491911889:609216..609432Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:609216..609432TCONS_00005145-exon-sc0000051-1510915933:609216..609432Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:609216..609432TCONS_00005145-exon-sc0000051-1575043694:609216..609432Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:609817..610056TCONS_00005145-exon-sc0000051-1491911889:609817..610056Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:609817..610056TCONS_00005145-exon-sc0000051-1510915933:609817..610056Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:609817..610056TCONS_00005145-exon-sc0000051-1575043694:609817..610056Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:610326..610492TCONS_00005145-exon-sc0000051-1491911889:610326..610492Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:610326..610492TCONS_00005145-exon-sc0000051-1510915933:610326..610492Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:610326..610492TCONS_00005145-exon-sc0000051-1575043694:610326..610492Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:610692..610876TCONS_00005145-exon-sc0000051-1491911889:610692..610876Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:610692..610876TCONS_00005145-exon-sc0000051-1510915933:610692..610876Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:610692..610876TCONS_00005145-exon-sc0000051-1575043694:610692..610876Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:612749..612927TCONS_00005145-exon-sc0000051-1491911889:612749..612927Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:612749..612927TCONS_00005145-exon-sc0000051-1510915933:612749..612927Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:612749..612927TCONS_00005145-exon-sc0000051-1575043694:612749..612927Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:613169..613335TCONS_00005145-exon-sc0000051-1491911889:613169..613335Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:613169..613335TCONS_00005145-exon-sc0000051-1510915933:613169..613335Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:613169..613335TCONS_00005145-exon-sc0000051-1575043694:613169..613335Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1491911889:613546..613621TCONS_00005145-exon-sc0000051-1491911889:613546..613621Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1510915933:613546..613621TCONS_00005145-exon-sc0000051-1510915933:613546..613621Clytia hemisphaericaexon
TCONS_00005145-exon-sc0000051-1575043694:613546..613621TCONS_00005145-exon-sc0000051-1575043694:613546..613621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:607504..613621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0228447	0	0.336256	0.202446	0	0.101866	0	0	0.192507	0.190761	0	0	8.92747e-05	3.1117	0.0648597	0.250576	0.845424	1.14753	0.461403	0	0	0	0.0261932	0	0	0.138981	0.0313246	0	0.0760673	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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