TCONS_00005144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005144
Unique NameTCONS_00005144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005144 ID=TCONS_00005144|Name=TCONS_00005144|organism=Clytia hemisphaerica|type=transcript|length=3585bp
aattccGAGAATTGATTGTCGTttcaaaaaaaacctttttaacGGAAAGG
GCCCAATGCAAAAGTGCGGATTGGCTGGCGAGGAGCGAATAAAATGCGAC
ATTGTTGTACTAGGTTATTTGTATTGACCTATGTTTACAAAGCCAAtcaa
aatgcattggaaaaaaacttaaatttaatGACTTCGGTGACTTCCTTCCC
TCTAAGCTTCGtcatttgttttgaattgaTGGAAGTGTCCGGTTGATTCA
TCACCCGGTTCGAAAAATTAAAGTCGGAAAATAAACAAATCGGGAACAta
atatttttatcacgtgTTCAACTTAGAGTATCCAAGTTGGCCCGAAAGCG
TGAAGTTTTTCCCTTCTAAAATCTTCTTCCAGTTTTATTTAGGCATGATT
TGCAACTGGAATAAAAATTTCACTACAAACAAGCGTGCAAGAAGTAAACA
TGGACGAGATAAAAGTTGAAGTTCGGAATCAACAAAATGGATCTTTTATG
CCAgcTGAGATAAAAAATATCCACAGTGAAGAAGCAACTATCGCCTTTGA
ACATAGCCCAGATAAATGGATACGCGTACCACTAACAGATGTTCGGAAGC
CATCCGGAAATCCGCTGAAAGAAGCCTACCAATATTATGAAGGAGAGGAA
GTGGAGATCTTCTCACAGGAAGACACAGGGGAACCCATGGGATGGTGGCT
GGGGAAGATCTTTCAACGGAGAGGAGGCTTTTTTGTGGTCCAGTTCAAAG
GACTTGATGAAGCATATAAAGAGATACGCCCTTTGGAACAAATTAGGCCA
ATAGGATACTGCTATCCAGTGACACGCTCCATGTACTTCAAATGTATGAT
TGACGTTCCTcaagatttaaaagaaatATGCGGAACAGACGTGCATCAAG
CGTTTTGTGATCAAACCAAAGCGTCGTCAGTGTTTTATCATGCAGATTTG
AACGTGCTTGTCGTCTTGTCTCTTCGCGAGGAATCAATCAAGAAAGCTGC
CATCTTGAGCGAGATGCATTTCCGGAGTCTACGAACGAAGCTTCTCTTAA
TTTCACGTAACGAAGAAGCTGAAAAACAACTGGGTTCAGCGAAGAAGCAA
TCCTTACAATCTCCTGTCTATGAACAACTCACCTTACCCGAGGACTTGGT
GGGTCTAGCTATCGGTGCACAAGGAGCCAACATTCAAGCCGCGCGACGAA
TTCCTGGTATTTTGTCTGTAGAGGTGGACGAAGCACTTTGTACTTTCAAT
ATCCTCGGAGAGAATCGTGAATGCGTAGCGGAGGCGAAGAAGTTGTTAGA
TTTCGGTGAGAAACAAGTTCACGTTCCACGGGTGTATGTTGGCAAGGTGA
TCGGTAAAAACGGTCGTATCGTGCAAGACATCGTCGATAAATCGGGCGTT
GTTCGAGTGAAGATTGATCCCGAACCGGAACAGAACAAATCCGAAGAAGA
AAAACAGAAAGACGTTCCCTTCTTGTTCATCGGAACACAAGAGAACATCT
CCAACGCTCAAATGATGCTGGAATACCATCTCGCTCATCTCAAAGACGTC
GAAAGATTACGCGATCAAAAAGAAAACATCGATTCCGAACTTCGAACTTA
TGGTGTCAACCCTCCAACTGGACCTTTCTTTCCGCCGCCAGCAGAAATGC
GACGTCAACACGCTCTCAGTCTATGTTCGCAAAGTGACATGGTGCGCGAC
CGAACGCAAACGATTGACAGTTATGCGGGAGATTTAGCAGAGCTTCCAGT
CTACACGAGTAACACTTCTAACAAATCGAATTCTTCTTGGAACATTCGAG
TCAGAACGCACAGTGAAACTGAAGtcttgaaaaaagaagaaaagGGTCGT
TCGTCACCACACGGTAAAAGCGAAAACATTCCGCAAACTATCCCAGAAGC
TGATGCCGAATACACACAAGACCTTTCCCATGACAACTCATCCAACACAA
CTAACACTCATCACACTACCACTAGTAATCGAGGCAAAGGGAGTAGACGA
GGCTCTTTCCACGGCAATAAGAGTCAAAGCACGAACAATGGCCACGGGCG
AACGCGCGTGAACAGTGAATCTGAAAGAATGACAGCGAATGAAGATTTGA
ATTGGCGAAACCATCGACCCGAAGAAGAAGACCAAGTGACAGCCGAACAt
ttccaacaacaacaacgcaGAAGAACGAAGAGCGAAGGAGAACCTCTTGT
CGAACCCAAAGTTCTCATCAAGAAACGAGCAGCCACTAACGCAACCGCTT
CTCAGTCAAACACTAAAAATACCAACAGCAAAAATGGGCACAAAAACGAC
CACCAAAAAGCCAATCAAAAGCATGCTCCTGGTAAGGCTACTCAACAACA
TAACAACAATGCTGCATCACAAAAGCAACAAAAGCACCATGGTAACCATC
ACCATAacaaccaacaacaacaacagttgcGAACAGGACAACCAAGAGAA
CATCGCAAGATCTTGCGCAACAACAACAACGCTTCAAACACCGCAAACAA
CCCTAATAAACAACATGTTCAACAAACCAAACATCAAAAGCAAAATGAAA
TGCCCCTTACTAATGGCGTCGAAGAAACATCAAATAACACCACAGACGAA
AAACCGCCCGTGAAGGAAGAAGGGTGTGGAGACTGTAAGTCTAACCCTAG
CGTTTTGAAAGATGATAATAAAAACGAGATAAGCGTCGAGGAGAAAATAT
GTGTCGAAGGACAAACTAAAACTGACAATGTGACAGTTCTAAAAAGTTCT
CAAGACACTCCGGCTATGCCTGTAGAGGTAGCACAAGAATCATAAATTTc
cgttaattttttttgagtttcttttATACTGATATACTGATATTGAGTTT
caaagcaaaacaaatcaaaacacttAAGAATATTATATGCGAATATTTTT
TGGAAGGGATATAACCATGAAATGATTGTATATTACTTAGTTATAATTAT
ATCATAATGTATATTTTATCACAgttaacatttttttcatactgatttca
ttttttattggattttaTTACACATTATATTAGTGTGTCTTTGTGTGATT
TTAGTGGTCCATGATTTGACCCTTTGAAAGGTGATTGATTTTTAGTCCTA
GTCTTCTGGAATCTTGAAATTAAAATGTAAatacgctctctaattcgatc
ttcaagggggaTTGGATTTATCGAAttgtagaacgtcgaattagagagcg
tcaactgtatgacCATTTCCGTCTGGGAATCTTGAAGCTTTCggaataat
atcaaaatatctCGACTTGCGGATATAATGAACTGACAGTCTATTTCTCT
TCAAGAACTCGCTTAGGTTATATTATACTGATTAGTTAGAATGAAaggaa
atttttattaattagtgttttatttttttgatgtgTATCATAAGGAGAGG
TAAACATATTTTATGGTGCGGTATGATTCTTTCTTCATtatctttatata
aaaatacaATGGCTGCTTTATAACAACCAATTTATTTgccaaaactttat
aatacaaTTGTTGCTGATgaactaaaaaagaaatttgaattacaaATAAA
CATTCTTGCTTTTTTTATACCAAGTGCCAAAACTT
Run BLAST on NCBI

transcript from alignment at sc0000051:576240..591852+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005144 ID=TCONS_00005144|Name=TCONS_00005144|organism=Clytia hemisphaerica|type=transcript|length=15613bp|location=Sequence derived from alignment at sc0000051:576240..591852+ (Clytia hemisphaerica)
aattccGAGAATTGATTGTCGTttcaaaaaaaacctttttaacGGAAAGG
GCCCAATGCAAAAGTGCGGATTGGCTGGCGAGGAGCGAATAAAATGCGAC
ATTGTTGTACTAGGTTATTTGTATTGACCTATGTTTACAAAGCCAAtcaa
aatgcattggaaaaaaacttaaatttaatGACTTCGGTGACTTCCTTCCC
TCTAAGCTTCGtcatttgttttgaattgaTGGAAGTGTCCGGTTGATTCA
TCACCCGGTTCGAAAAATTAAAGTCGGAAAATAAACAAATCGGGAACAta
atatttttatcacgtgTTCAACTTAGAGTATCCAAGTTGGCCCGAAAGCG
TGAAGTTTTTCCCTTCTAAAATCTTCTTCCAGTTTTATTTAGGCATGATT
TGCAACTGGAATAAAAATTTCACTACAAACAAGCGTGCAAGAAGTAAACA
TGGACGAGATAAAAGTTGAAGTTCGGAATCAACAAAATGGATCTTTTATG
CCAGTAAGCAATTTACAATGTATTTTTATCCCTTCCAAAACAAACATTTT
GTTTATTGTTTCTTACTCAACCTACAGGTTTCAAAAAATCTGACCCAAAA
ACCTGTTTAAGGATTTTATGTTGTTAGCAAAACCTCTTCAGATTGCATCC
ATTTTGCAAAACAATTGCTGAGGAGGTAGCTTCCTTTTGATGTATTGCTG
TAGCCTGACAGTATAGCCCTAACTCttcataaaaaatttacaaaaaacgc
atatttggactttgtacccaatgCTGTAGTGCTGTAGGCACCCATAAACA
GTTGGGTGTTTATATATAAGAccagacccccgcgctcgataggatcgatc
atcggaacagctcgatgacggatcgatatgtgatcgatggattacttatc
gatccggataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtattggctttcagaaaatatat
acttttgatgtataaaaatttgttgttctaaagatatgatcaattaaaga
gaatgtgtcaaggaaggtgaacacataccttaatcgattcgtcatcgatt
cgtcatcgattcgtcatcgattcgtcatcgattcgtcatcgatcgttaat
cgattcgtcatcgattgttaatcgattcgtcatcgatcgttaaacgattc
gtcatcgatcgtttatcgattatgcatcgattataaatcgattatgcatc
gattataaatcgattatgcatcgattataaatcgattatgcatctaTCAT
GTATCGATCATGTATCGATCATACATCGAACCCGTAAATCAATTAATTAG
CGGGTTCGGGATGCTTAttatattaggtacccgagagtaccatATCGGCC
ATTTTAAGCCGGCCCCCTCCGCTTTTTTAAGTTCGGAGCTAGGgctcagg
cgaaattccgtaatctaaaccttccagcagATGTTGAAAGTTTCCCCGAC
CTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGATCGATATGGATCGattaatcaatataaaaa
aacggtcgatattttgattggatcgatagaggtgtcgataggtaatcgat
aggtgtcgataggtaatcaatAGGTGTCGATAGATAATCGATAGCGAGAA
AGATCGATTAATATTAGAGCTCGACTTTTAGaaagagtcgatagggtcga
taagatcgataaaagatcgatgatagatcaataaaagatcgatgaaagat
cgatgatagatcgatgatagatcgataactaatcataagcttaaaaaaat
cttgagtatcgatcctctatcgatctcttNgatcgataaaagatcgatga
tagatcgatgatagatcgataactaatcataagcttaaaaaaatcttgag
tatcgatcctctatcgatctcttatccggatcgataagtaatccatcgat
cacatatcgatccgtcatcgagccgttccaaTGAtcaatcctatcgagcg
cgggggtctggataagatgaaaaaaaatattgctcTTTTCAGcaactact
ttaggcgtacaaacttttgcgagctgaaacttttgcgaggacgaaaaatc
gcgaaattcacgacatttactttcgtgaatttaatggaaaaatatttttc
gcgagcataaactttcgcgaatggcccttcctacaggctagctctaaact
AAAGCTCctaaacagcatctaataacatgaaaaccagaatatgattcttc
aatgggaatcaaaactataaagtgcacttacaaacatcaatttgtcagat
ctaacaaaattaagaaccgcactgtcatcattgacaataaaacaaacgat
tttctgtcaagagccttgtaaacattccaacaacttccaccGAAAtaatc
tatcacagctcagtctaccattttgagcggtccaaggattgagccgagaa
cgctcctcCAGCTACTgtgcgggtgaaaaacttcaatctgtcaatcattt
tctcaagcgaagagtacgcgaagtgattctagctttacgatagtgccgca
gatcatcaatggatagtattcaattatcattatccctttattttcattcc
ttgaacttttgcaaaaaaaaggaaaaattgaaaagttgtattttttactg
ctctattcacatactgaattttagtctgggtatccagactcaaatttcag
aaaaaaacgtcttacctcaacatacaaagtttctaaaatatagagtctgg
tgcaactaaaaaagttgggtacagtttgtttgatacagcctgtgagtgaa
cccttgttgacagactatcaaaactttgtaaacccaggcagacacacata
attaacttactgtaaaacctcttttacaaactcaaaaaactttcaaaact
actttaagctatgtcaaaacatcagccacatttataaaggctcttttcca
gcagccattttgtttagaaatgaacctgtgttttcattttcatttgttta
tctttttttgcaaggttagctttttccataaattatgcgtgcgcatcgaa
aaatatcaaaaacctcgcgaaaattctgctcagtgactgggcgcgtactg
accaattagagacactcgcatatgcagggacagatatccctgcagacgag
ttacttggaccagatcgtaaaccagagacaaaatatttaaaaaaactaga
cggtgaaatagtttacggtctggatatccaggctaactgaatttgaaaga
tcttctatgtggcgtttttttacaaacttcaaaaaactgatttttgtcct
gcctttgcgggactttcgcttaagtgcttgagtgcagcatagggtacaaa
gtccaaacatgcatttcccgtaatttttgtatgaagagttaagtCTTTAC
tgtcctagaatttttaaagacatttactttcgcaaaaagggccaaaattc
gcgaaaatcgccaaagtttctgctcgcgaaagtttgtacgcctaaagtat
tgcCAAAAACGTCAAATTTTTAATGATGAAATGTTGAGTCAGCAGAAATG
TGCTGTCCTTATTCCTTAtgagggcaaagatgtcagaggtgtttgaaaaa
tgcaaaattatatcaaggGAAAGTTTTTTCGGTTCGGTGAAAttgtggcc
aaattgccgtcccaagttagagcagttgacagttctttttcagggtgtct
acgggaccttgaaaactttgaaaatgaaccacccaaccttgaaaaccttg
aaaactatcaattttcttagGAGTCTTCCTACCTAAAGGTacctcttttt
gaaaaaatttgcctGCGGCGCTATAAAGTTGCCTTTACAATGTTGGGTCA
AAGTCATTGCATTAAGGGGGATCAGATTAAAACTTCTTTaaaatttccta
aggggggtctGAATCTCCGAATCGCTACCTTaataattcaaaaggggccc
aAGTCCAGGTACCCCCCAGTTCAAAAGGGTCTAAGATGctaatcaaaaat
agtgtgacattgtaaaaaatgctcaaaatcaactttttggaaTAACTCTT
CATATTTTTTGAGTCAGCCATAGAGATTTCACAGGGTGATAGACCTCAAC
GTGGagatatgattaaaaagaaaattgttattTGAGTCAAAATTGTGGCT
ACAGTTCAaaaattctagtttttttttaagtgtaaGCCACACGATGTTGA
AAAGCGATCTCTGAATGGGACCTTCTAGACTTGAAAGAAGAAAGgctgaa
ttttccaaaaagtgttaaatgtacatactttTGCGTTGTTAAATGTACTT
TTTTGTGGCTTTTTTTGTCAGCCACACATTTTACTCACACTTCATGCTTT
AATATATTTAAGTTGAGTAAGCCACAAaatttcgttctttttgcaaCAGG
TAGATGAATTATTCAGCTTAACCATGGATGTATTTTGACATGTAAGCCAC
ATGATGGTCTCATTCTATGAGCAAAATAGTGGATGAcatcaaaaatgtca
caaaacaggggttAATTTTTGATTAGCATCCTAAGtccattttatgaaat
ttgagatctttgatttttctcaatctctggctcatttgctctcttttgat
gtacataacaagtagtttttaaagttaaaaaggcTCATAACTTTATACTG
AAGCTCTAATAAAAGTGATGTTTATTTCAaaagaggcctaagtccatcaa
cTTTTTACAATAGAAGGGCCTAAGTCATCATCTTTTTACAATATAGGGCC
TAAGTccaccaaaataagtttgttAAGTTTTAAAGAGGCTTAAGTCCAAT
TGAATTGCAaatgggcctaagtccatgCATCCTAAAAAGTTTAATTGAGT
TTTGCTTTATCTTACTGAGTCTTTTCTCTTTGTCTTGAATCTAGGTGTAA
GTGGCTTTATTTTGGAGTGTCATATGTGcaggttttgaaattttaaaggc
AGAAATTAACCCTcatacatttttcaaaattcatgtttgATTCAAAAAAG
GCTTAAGTCCAATCTGCAAGATTTACTAAGTTGCACCTGGTAcgtataaa
aatatcaactttccaaaagaatgcctttttattgaaaaaacaaGTTCAAG
CTATGGCTTTCATAAACCATTTACTTCAAAGCTTTACCATGgctcgcacc
ccccccccccccccccccccgggggggggggggcccccccccccccgggg
gggggggggcccccccccccccgggggggggggggcccccccccccccgg
gggggggggggcccccccccccccgggggggggggggccccccccccccc
ccccgcctgAGCGGGGGGAGCTACACCTCAAATTTGCCATATAAGAGGTG
GGAGCTGTTTGTTTTTCCTGACAGGCGGGGGGAGCTCTATCTTGGGGGGG
ACCTGCATAATTTTATGTAACTCTGGGGGCTAAATAACACTTCCTaagta
tttttctttactgtttttaatttctctaaaaaacCTTTATGTCTTCATGC
GAAGTGTGATCTGATCCTTAGAAGTGCACACccatgtaaatagagctttg
gaAATCCTTGCAGGGTTCccagcggtcagggaaaacctggaaaacctgga
aaaaggaCTGCTTTTAGAAAAAGTCAGGCAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATTTTAAGAACT
CAAGGGTGCATAAGTTGTATAATGTTAAGTTACTACTAGTTTACTTTACT
GTTTATTTACTTGTGTTTTCATTGACTAAATGGTAAAAActcacattgaa
aaaaaattatctagcaaaaatttttcccctaatatactgggacctaaagt
tttatcaggctggggggaccttgttcttaggggggacctaaatttagcgg
ggggacctagaaccctaGTCGGAGCCATGTTTACAATCAAAAATAGTTTC
AGAATaaaggaaaaactttaaaatcgcaattttctcaaaatgaccaaaat
ggactaaggccccttttgaattaaggttacaggacttaggccccttttgg
aTTAAGGTAGAAAAATGTATTTCCTAAGGGAGAATATCAATTGAGGGAGT
GGTCTTCCTACCTTAGTCCCTTAGACCCCCCCTTCCTGCCTAAGGAGGGg
tggtcttgacccctctagaaactgaTGTGATGTCTAtcaaaatgtatcaa
atttAGGATACATGAGGTTTGCAGCGCAACAAACAAAAGAGAAATAGCAC
TTTCTATGGCACTAATTGCTCTACAACCCAGGGGGGGGACACTCACCCTT
AAGGGttctttttccaagcttcccaggGTGCATTGTAAGGGTCAAAATGA
ACAAAGACGAGAAAAAGTGCACTCAAAaggtgtaaaatttggaaatttga
cCATAATTTGTCTTGAAATGATTATTAACAATTCtcaagaaaatacaaaa
aaaaattttctaaaatttagctaaattttttctgcactgtatgTGTTTGA
CTTTAAAGACCTTATTTCAGGCTGCACATACTGTCGTTTTTAAGTCTAGT
GCCCTTCCTCTGGGCTTGACCAATAGCAAACTGGTTCAGTTAAAACATGT
ATAAGTTATTTCTGATATCTATTTGTTTTcgaatatttgtttttaacGAT
GTCTACTAGTATCTAAATTTTATTTGAGAGCCGTGCCAActgattataaa
aaaaccttgaaaagtacCAACATTTTTGCCAAATAACTttgaaaaaccac
ttaaaaatgaccaaaaaaaccttgaaaatcctgaaaaaaaaatccgtaga
caccctgtttTTTATCTGAACTTAAAACTTAACATTACTGATGCCAGTTT
GTCTTATGTTTTCCACTTTTAAGTTGAGTGATTTATATATACTAATTCAC
ATGAAAATACGGGTTTTCAATCttttaaagccataaaaaaatataaaatt
ttaatatGTATTTGACACTTTTAACATGACTGATGCACTCAAATTTAACC
GATCAGAAGGAAAAACCTTATTTCAACCGCTGATAACTAGTTACTCCACA
ACAGTTACTGAGAGACCAAGGCTCGAAATAAtgatttcaagtgggtcgga
caaaatatccgatcagggttgctttagcttgaaaattatcatTATTCGGT
CGGCAATGAGGCTATTTGGGTCGAACAATGTCCAATGTCGACcattattt
cgagccctgagagacaagataatttatcacgtttttattggctgagggaa
agtaatgcatgtggagtaatttgttatttaaTAGGCTGTCGCATTCTCAA
TCAACTTTGCTTTCCAAAGATAGCAAAAATTGTCGAGCCGAAAActgcaa
ttttcatttataaataaactttttttacttttctgctTATTCAGCGTGtt
atcgttgaaaaaattgccgtttttattCTAAACACCCAACTGACAAGCAG
gaccaaaatcagtttttaaagtttgcaaaaaaatgccacatagaagatct
ttcaaattatgTGAAGAAGCAAGTATGTGAAtaaagcagtaaaaaataca
acttaattgcatttttcctctttttttggcaaaagttcCAGAAATAGAAA
TAATGGATTAATgttaattgaatactatccatcaTATTGAAAAGCTTAGA
ATCGCTTTGTGTACTCTTCACCTgcgaaaatgattgacagattaaaaagt
tttcacttGTGAGGAAGTTCCATAGTGGACTGCAGGGATGGCTTTTTTCA
ACTCTGCTCAATTTTCAAACCGAGCAAAATGGTAGAGCTTTAGCTGCAAG
AGTTCATTTTGAAGGAAGTTGTTGAAAATGTTTACAaggttcttgacaga
aaatcttttgttagattgtcaaatgatgacagtgcggttattaattttgt
tagatctaaTAAATTGCTGTTTGTGAGTGCACTTTATAGCTTTGATATTC
CCATTAaagaagaatcatattctggtttttatGTTACTTTTCATGTCCTA
TCTTAAATTTTTCGCTTTTTCAAAGTATTtacaaaaccgcaaaaattaga
acatgctaattagaaatTTGCACATTTTTAAACAGGGATAATTTTAAATC
TTCATATCTCGGATGTctattcttaaaaatatttggtTGTCTTACTATAG
ACCAAGGGTGGGTTGAATCTTTAGCCAAGTTTACtttttatctggttatc
cctttaatcagaaaaatccctaggaaaatgaaagaaatgtatCCAAAATA
GGGCAAAACTGCTAAAAATTAATTCttgcaattaaagttgaaaaatttag
aaaaggaGAGTAGAAACCAGGGGTCcaatttgagatatttttccttgcca
gtgaccccatAGAAAtgtttttagttggcagacaaaATATGGGTGGCCAC
TATGATAAGGAACTTCTAAAATTGACTTTCCAAGCGTCTCTAGGCAAAAA
TGACCTTACCCCTTTCAAGGCTCCATGGAATGGAGACTTTTCTCCAACTT
taccagcttggcaaaaacttGTTTTGTAGTCCCAAAAGATgatataatga
gaaaataaaataaaattaaaactttatataccgggtgttttagaaaaaag
tgtatgtaCACTACAACCAACTTtgccatcacattcaccagaaccatcaa
ctccaccatcacattcaccagaaccatcaactccaccataacattcgtta
ccacatcgttaccacatcgttaccacctCATTaacacttttagtaacaac
gcagAGGCAGACATAAAATAGCTGGTCACTGACCCTGTGATTTGGTCACC
ATCttttttggcttgtttttgTACCGGTTCAAACAATAGCCTACTATTCA
AACATAGCTGACAAAGACAAAGAGACGATTCCTTTTCAGTTGGATAAGCC
ACAAAGAATGGACGAAGGGAAAGAACAGATcccagtgaaaaattgaaacc
tttgcttatgatttttttgaatccTTTTCCTATGATACATAAACAGCTAA
AAAATTGACCAAGCTAAATGGTTTGATAAAAAGAAATTAGATATGGCAGA
AATAGAAAAATCTTCGGAAGAAAACTGACGGGTTGTtacaattttatcat
tttttgtgtAATTGAACTAAATTCAAATTCACTATAACTCTTTTAATTCA
AAACATACATCATAATAACTTACAAACATTGGCAAAtcactgttacaatg
aaaaggTTGAAGGAAATTGTCATTATTTCAGATTATTTATGCaatgttac
atttttatcaatatcttGAATTCTACCTATGTTACGCACTGGCCTGAAGA
CATTGGGACTACCTAAATAGGTCATTCTAACCAATTTAAGTGAGTTATTA
GCGATGAACTAACTTATTACTACACACATGAGATAAAATTAGTaacaatg
ttattttttatcatttctctGTACTGAAtgcaaattttgacattttgaca
aaGCCATATCATTTTAAATATTGCAGCGGgtcttttctgaaaatttcaga
tcccAATGTTGAGAAATGTCAATTTTAtagcaaaaatttgattttagtga
aTTTTGAGATGTCCAATGCATTGCCTCAGATTTTTGAACATGTTCTACAA
GTTTGAAGTTAGTTTGTGAGAAAActagaaaatgttataaatCCAAACTT
TTTACCATTTAAATAAGAAAAGACTCGGTTGAATTTAGAGCTATCATACT
TTTACTCTAACTCAACAATTTTCTGCTACGGCTCTATTGACACtatcatt
aaaattattttagattttctttttctttttctaggcTGAGATAAAAAATA
TCCACAGTGAAGAAGCAACTATCGCCTTTGAACATAGGTAACCTCCAATC
TTTCTgttgctttttttttttggaagctttgataaaattgaaaaattctc
aACCAGTATAAAGAAATCCAGAAATATTTTGGTTCTTTCAGCCCAGATAA
ATGGATACGCGTACCACTAACAGATGTTCGGAAGCCATCCGGAAATCCGC
TGAAAGAAGCCTACCAATATTATGAAGGAGAGGAAGTGGAGATCTTCTCA
CAGGAAGACACAGGGGAACCCATGGGATGGTGGCTGGGGAAGATCTTTCA
ACGGAGAGGAGGCTTTTTTGTGGTCCAGTTCAAAGGACTTGATGAAGCAT
ATAAAGAGATACGCCCTTTGGAACAAATTAGGCCAATAGGATACTGGTAA
GAGCTTTAaaccaaatttcaaattgtcaAATTTCTTCATATTCAtccttt
agtttttctttttaaacttattcttgatattcatgacgtaattttttatA
CTGAAGCAACCAAAAACACCGGTCGTTTGCCGATAGTTTTAAATTTAAAC
AATgaaactggtggcaaacgccGGGGTGTTTTTCTTGTGTTTCTGTAAAA
GATTACGTTCTGAATATCCAGAATTATCAATGATTTTGAAATGCTGGATA
ATGCTGCACAtccttctttgaaaaaatttctagtTTACTCAGATGCTTCA
TGAACTTTGAATTTTCTCTCCTAATCATTTTTTCTAGCTATCCAGTGACA
CGCTCCATGTACTTCAAATGTATGATTGACGTTCCTcaagatttaaaaga
aatgtAAGACAATTCTTGGCATAAGATATGGTTTTTTTTGTCCTATGGAA
CACCTGAAAATATCTGAATTATAATTTGTTAATTTGTTACTTtaatgctg
aaaatttcaatgcTCAAATCAGGCCTTGGTAACAGTTCCGTTTCCACGAA
AGCTAAAACGTGCGTCAAAATAGCTGAGAATGGTTAAAGTGAAGCCCAGt
tcaatgggctgttccattaaaaaaccatacagagGGGACcgaaccttttc
aagtaaagaaaaattattgaaaatgtgtggataccccctggaaaatgaca
aaatttgcaaaaatttcctatttttATACCTtgaagtgagggtggacgaa
ctaaaatcaaNTCTCTTTAGATGCGGAACAGACGTGCATCAAGCGTTTTG
TGATCAAACCAAAGCGTCGTCAGTGTTTTATCATGCAGATTTGAACGTGC
TTGTCGTCTTGTCTCTTCGCGAGGAATCAATCAAGAAAGCTGCCATCTTG
AGCGAGATGCATTTCCGGAGTCTACGAACGAAGCTTCTCTTAATTTCACG
TAACGAAGAAGCTGAAAAACAACTGGGTTCAGCGAAGAAGCAATCCTTAC
AATCTCCTGTCTATGAACAACTCACCTTACCCGAGGACTTGGTGGGTCTA
GCTATCGGTGCACAAGGAGCCAACATTCAAGCCGCGCGACGAATTCCTGG
TATTTTGTCTGTAGAGGTGGACGAAGCACTTTGTACTTTCAATATCCTCG
GAGAGGtacttacttttttttcgattttcaaaagCATGATGAAGGTTGAA
ATTATTTAATTTAAGATTTATTTACTGTCACGGTCTTGATACTTACCTGC
TGTATTCTTTAATAGAAATATTCATATCTCCTTGCacctttttttttgct
ttccaGAATCGTGAATGCGTAGCGGAGGCGAAGAAGTTGTTAGATTTCGG
TGAGAAACAAGTTCACGTTCCACGGGTGTATGTTGGCAAGGTGATCGGTA
AAAACGGTCGTATCGTGCAAGACATCGTCGATAAATCGGGCGTTGTTCGA
GTGAAGATTGATCCCGAACCGGAACAGAACAAATCCGAAGAAGAAAAACA
GGTTCGTTTATAACTGTTTGTAAAACTTACTGCTTCTTTTCTTATAAACA
AAGAGTTCACAGGCACAAGCTGTTACACGCGAACATTGTGGCTTTCCCGT
AGACTATTGCCTTGTAGAAATACCTTTTAAAAGGAGTCAAATGCATTTTT
CTATATCTATCACTTGCATCTTTTCGATATTTCAGAAAGACGTTCCCTTC
TTGTTCATCGGAACACAAGAGAACATCTCCAACGCTCAAATGATGCTGGA
ATACCATCTCGCTCATCTCAAAGACGTCGAAAGATTACGCGATCAAAAAG
AAAACATCGATTCCGAACTTCGAACTTATGGTGTCAACCCTCCAACTGGA
CCTTTCTTTCCGCCGCCAGCAGAAATGCGACGTCAACACGCTCTCAGTCT
ATGTTCGCAAAGTGACATGGTGCGCGACCGAACGCAAACGATTGACAGTT
ATGCGGGAGATTTAGCAGAGCTTCCAGTCTACACGAGTAACACTTCTAAC
AAATCGAATTCTTCTTGGAACATTCGAGTCAGAACGCACAGTGAAACTGA
AGtcttgaaaaaagaagaaaaggtaGCGAATTCATCGATTTCAAAGTCAA
AGGCTAGATAGAGATTAACCTTTAACCTTTCTTGGACTGCCTTGACATTT
GCGCTTCTATCGGAATGATGGATTGAATCCAGGATTTAAAATAAGAAGCT
TCATTTCCCTTCTCAGAGTTTCaactctagccccttcgggtcTTTGTGTT
TCGTGATTCTTGTAGAGTATTATTAATTTATACAGGTTATCACATGTGCT
TGATGGGGTCATAAATTGTCTTGTTCAAAATATTCATACCGTTCTCATTC
ACTTTATAGGGTCGTTCGTCACCACACGGTAAAAGCGAAAACATTCCGCA
AACTATCCCAGAAGCTGATGCCGAATACACACAAGACCTTTCCCATGACA
ACTCATCCAACACAACTAACACTCATCACACTACCACTAGTAATCGAGGC
AAAGGGAGTAGACGAGGCTCTTTCCACGGCAATAAGAGTCAAAGCACGAA
CAATGGCCACGGGCGAACGCGCGTGAACAGTGAATCTGAAAGAATGACAG
GTGTGTAGGGTTCTTTCTATTTCGCATGTCGTAAAGTTATTATGGTGATA
GTCAAATGGCGGTTTTACATTTAAGAATATATATTTGGTAATGTGATATC
TTTTTCTCTTAAGCGAATGAAGATTTGAATTGGCGAAACCATCGACCCGA
AGAAGAAGACCAAGTGACAGCCGAACAtttccaacaacaacaacgcaGAA
GAACGAAGAGCGAAGGAGAACCTCTTGTCGAACCCAAAGTTCTCATCAAG
AAACGAGCAGCCACTAACGCAACCGCTTCTCAGTCAAACACTAAAAATAC
CAACAGCAAAAATGGGCACAAAAACGACCACCAAAAAGCCAATCAAAAGC
ATGCTCCTGGTAAGGCTACTCAACAACATAACAACAATGCTGCATCACAA
AAGCAACAAAAGCACCATGGTAACCATCACCATAacaaccaacaacaaca
acagttgcGAACAGGACAACCAAGAGAACATCGCAAGATCTTGCGCAACA
ACAACAACGCTTCAAACACCGCAAACAACCCTAATAAACAACATGTTCAA
CAAACCAAACATCAAAAGCAAAATGAAATGCCCCTTACTAATGGCGTCGA
AGAAACATCAAATAACACCACAGACGAAAAACCGCCCGTGAAGGAAGAAG
GGTGTGGAGACTGTAAGTCTAACCCTAGCGTTTTGAAAGATGATAATAAA
AACGAGATAAGCGTCGAGGAGAAAATATGTGTCGAAGGACAAACTAAAAC
TGACAATGTGACAGTTCTAAAAAGTTCTCAAGACACTCCGGCTATGCCTG
TAGAGGTAGCACAAGAATCATAAATTTccgttaattttttttgagtttct
tttATACTGATATACTGATATTGAGTTTcaaagcaaaacaaatcaaaaca
cttAAGAATATTATATGCGAATATTTTTTGGAAGGGATATAACCATGAAA
TGATTGTATATTACTTAGTTATAATTATATCATAATGTATATTTTATCAC
AgttaacatttttttcatactgatttcattttttattggattttaTTACA
CATTATATTAGTGTGTCTTTGTGTGATTTTAGTGGTCCATGATTTGACCC
TTTGAAAGGTGATTGATTTTTAGTCCTAGTCTTCTGGAATCTTGAAATTA
AAATGTAAatacgctctctaattcgatcttcaagggggaTTGGATTTATC
GAAttgtagaacgtcgaattagagagcgtcaactgtatgacCATTTCCGT
CTGGGAATCTTGAAGCTTTCggaataatatcaaaatatctCGACTTGCGG
ATATAATGAACTGACAGTCTATTTCTCTTCAAGAACTCGCTTAGGTTATA
TTATACTGATTAGTTAGAATGAAaggaaatttttattaattagtgtttta
tttttttgatgtgTATCATAAGGAGAGGTAAACATATTTTATGGTGCGGT
ATGATTCTTTCTTCATtatctttatataaaaatacaATGGCTGCTTTATA
ACAACCAATTTATTTgccaaaactttataatacaaTTGTTGCTGATgaac
taaaaaagaaatttgaattacaaATAAACATTCTTGCTTTTTTTATACCA
AGTGCCAAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002933XLOC_002933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005144-exon-sc0000051-1491911889:576240..576742TCONS_00005144-exon-sc0000051-1491911889:576240..576742Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:576240..576742TCONS_00005144-exon-sc0000051-1510915933:576240..576742Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:576240..576742TCONS_00005144-exon-sc0000051-1575043694:576240..576742Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:587224..587276TCONS_00005144-exon-sc0000051-1491911889:587224..587276Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:587224..587276TCONS_00005144-exon-sc0000051-1510915933:587224..587276Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:587224..587276TCONS_00005144-exon-sc0000051-1575043694:587224..587276Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:587381..587635TCONS_00005144-exon-sc0000051-1491911889:587381..587635Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:587381..587635TCONS_00005144-exon-sc0000051-1510915933:587381..587635Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:587381..587635TCONS_00005144-exon-sc0000051-1575043694:587381..587635Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:587977..588042TCONS_00005144-exon-sc0000051-1491911889:587977..588042Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:587977..588042TCONS_00005144-exon-sc0000051-1510915933:587977..588042Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:587977..588042TCONS_00005144-exon-sc0000051-1575043694:587977..588042Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:588410..588794TCONS_00005144-exon-sc0000051-1491911889:588410..588794Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:588410..588794TCONS_00005144-exon-sc0000051-1510915933:588410..588794Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:588410..588794TCONS_00005144-exon-sc0000051-1575043694:588410..588794Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:588946..589140TCONS_00005144-exon-sc0000051-1491911889:588946..589140Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:588946..589140TCONS_00005144-exon-sc0000051-1510915933:588946..589140Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:588946..589140TCONS_00005144-exon-sc0000051-1575043694:588946..589140Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:589325..589711TCONS_00005144-exon-sc0000051-1491911889:589325..589711Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:589325..589711TCONS_00005144-exon-sc0000051-1510915933:589325..589711Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:589325..589711TCONS_00005144-exon-sc0000051-1575043694:589325..589711Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:589999..590239TCONS_00005144-exon-sc0000051-1491911889:589999..590239Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:589999..590239TCONS_00005144-exon-sc0000051-1510915933:589999..590239Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:589999..590239TCONS_00005144-exon-sc0000051-1575043694:589999..590239Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1491911889:590353..591852TCONS_00005144-exon-sc0000051-1491911889:590353..591852Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1510915933:590353..591852TCONS_00005144-exon-sc0000051-1510915933:590353..591852Clytia hemisphaericaexon
TCONS_00005144-exon-sc0000051-1575043694:590353..591852TCONS_00005144-exon-sc0000051-1575043694:590353..591852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:576240..591852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.5425	14.6402	5.09389	4.1276	108.215	85.0325	65.1951	72.1483	51.7583	52.9513	72.0387	75.918	146.929	167.21	2.74952	79.2017	48.2826	59.085	38.1465	31.4147	90.936	87.5377	50.0054	55.1917	77.151	71.0005	19.105	24.85	22.627	23.4792
Blast
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BLAST of TCONS_00005144 vs. Swiss-Prot (Human)
Match: FXR1 (Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 1.012e-94
Identity = 169/383 (44.13%), Postives = 255/383 (66.58%), Query Frame = 3 
Query:  450 MDEIKVEVRNQQNGSFMPAEIKNIHSEEATIAFEHSPDKWIRVPLTDVRKPSGNPLKEAYQYYEGEEVEIFSQEDTGEPMGWWLGKIFQRRGGFFVVQFKGLDEAYKEIRPLEQIRPIGYCYPVTRSMYFKCMIDVPQDLKEICGT-DVHQAFCDQTKASSVFYHADLNVLVVLSLREESIKKAAILSEMHFRSLRTKLLLISRNEEAEKQLGSAKKQSLQSPVYEQLTLPEDLVGLXXXXXXXXXXXXXXIPGILSVEVDEALCTFNILGENRECVAEAKKLLDFGEKQVHVPRVYVGKVIGKNGRIVQDIVDKSGVVRVKIDPEPEQNKSEEEKQKDVPFLFIGTQENISNAQMMLEYHLAHLKDVERLRDQKENIDSELR 1595
            M E+ VEVR   NG+F    IK++H +  T+ FE++     +VP  +VR P    +K+  +  EG+EVE++S+ +  EP GWWL K+   +G F+V+++   D  Y EI   E++RP+     V ++ +FKC +DVP+DL+E C   + H+ F     A  +FYH +   L++LS  E ++K+  ILS+MH RS+RTKL+L+SRNEEA K L   K+  L +  +E+  + EDL+GLAIG  G+NIQ AR++PG+ ++E+DE   TF I GE+ + V +A+  L+F E  + VPR  VGKVIGKNG+++Q+IVDKSGVVRV+I+ + E     E+    VPF+F+GT+E+I N Q++LEYH+A+LK+VE+LR ++  ID +LR
Sbjct:    1 MAELTVEVRGS-NGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKK--EISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQ--LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENKLPREDGM--VPFVFVGTKESIGNVQVLLEYHIAYLKEVEQLRMERLQIDEQLR 376
The following BLAST results are available for this feature:
BLAST of TCONS_00005144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXR11.012e-9444.13Fragile X mental retardation syndrome-related prot... [more]
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