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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005140 ID=TCONS_00005140|Name=TCONS_00005140|organism=Clytia hemisphaerica|type=transcript|length=1583bp
CACACAAGTATATGTTTTGTTCTCCTAAGGTTATTTTCTTATATTGAGTT
TTCATTACTATAACATTAATCTTCCCTAATGATTTTAGTGAAAgcacaaa
aaaataagaaaaataaaacgaGATGTCATCACAGCAGAAAGATGAGCAAG
TCTTGGAACAAACAGAACAGATCTGGCGATTCTTGGACGAAATGTCATTG
AAGGATCCAAAAGAATACGAAACATTTATTCAGAAGGTGTTAAAAGATGG
AGAGAATGAAAATATGGGACCCCCTATCCCTTCATTTGTAGTCCAAACAG
AAAAGGTTCCTCAAGTGATTCCAATACGAAAATATTTCATTAATTTCACT
AAATGGCATCAGCTTCCAAAACCTGAAAACGAGACTAGTCCTGTTGCCAT
GACAActtcaaacattcgaaaagagATCATCGACAAAGAATGGGCTTACA
TCATCGACGTCACTCTGAACCCTGAGGTTTATCCAAGTGATACTTCGCCC
AACCAACTACAAAGATGTGCGCTTGTCGAACTCGTTTTTCGACACATCGA
GTCAAAACACTCTTTGCAATTTTCACGAAAGTTTGAATTTTGTGAAGAAA
ATTACATTGGAAATAGAGACAGCTTGCTCGACTTTATTTGTCCGAGTGCt
gtcaaaaataaattgaacAATGCTCTGAATGGTACTGAAAATAACCTGAC
GTTAGATCAAATCCGTAACCTATCCAAAGGaaaagagaacaataacataG
TGACAGGTAACCAAACGAAGACGGGGATGTCGAGGAAGTCACAAACAACT
CCGGCATCTGTTGAAACCATNGAACTCGTTTTTCGACACATCGAGTCAAA
ACACTCTTTGCAATTTTCACGAAAGTTTGAATTTTGTGAAGAAAAATACA
TTGGAAATAGAGACAGCTTGCTCGACTTTATTTGTCCTAGTGCtgtcaaa
aataaattgaacAATGCTCTGAATGGTACTGAAAATAACCTGACGTTAGA
TCAAATCCGTAACCTATCCAAAGGAAAAGAGAACAATAAAATAGTGACAG
GTAACCAAACGAAGTCAGGAATGTCAAAGAAGTCACAACCAACTCCGGCA
TCTGTTGAAACCATCAAAACATCGTCTGGTGAGTCTGTAGATTCTATGAA
AGAATTGAAAACGAAGACGTTAGGAAGTCACCATGGCAACAAGACAAGAT
TGCCGGCACCGAAGGTTGAGATGATGGTGAATAAAGATGGTGGAAATATC
GAATTGAGGATTGAGTTGCCGAAGGTTGACTCTGTTGCTGAATGTGATCT
GGAAATTACTGAGaattgtGTGATGTTAGAAGTGCCACAGAAATACAAAC
TGGATTTCACCTTCCCACTAAAAGTAGACTTTGATGAAGCCAATGCGAAA
TTTATCAAGGACCGAAAAGTCTTGCTGATTATTGCACCGATCGACAAATG
AGCGAGCTTTCAAACGATAAATTGATATGGagaaacaaagtcaaaatgga
GTTGCTGCTACCGGAAATTATTCTCGAGAATGATATTTTAGAAGCAGAGA
GACTTAAATATAAGACTTTACATCAAAATAGTT Run BLAST on NCBI transcript from alignment at sc0000051:556970..559364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005140 ID=TCONS_00005140|Name=TCONS_00005140|organism=Clytia hemisphaerica|type=transcript|length=2395bp|location=Sequence derived from alignment at sc0000051:556970..559364+ (Clytia hemisphaerica)
CACACAAGTATATGTTTTGTTCTCCTAAGGTTATTTTCTTATATTGAGTT
TTCATTACTATAACATTAATCTTCCCTAATGATTTTAGTGAAAgcacaaa
aaaataagaaaaataaaacgaGATGTCATCACAGCAGAAAGATGAGCAAG
TCTTGGAACAAACAGAACAGATCTGGCGATTCTTGGACGAAATGTCATTG
AAGGATCCAAAAGAATACGAAACATTTATTCAGAAGGTGTTAAAAGATGG
AGAGAATGAAAATATGGGACCCCCTATCCCTTCATTTGTAGTCCAAACAG
AAAAGGTTCGTCTCAGGATTATCTTATCCTTTATTGCGAGCTTCCAATAA
TCATATCATTTTGAGTATAGTTGAAATCTAATCGTCTTAGTGTACAGTTG
ACCTCGCTCATTCGAACTCAAACTTGTTCGAATAAcaaagagattcgaat
tatagagggtATTTTCAAGAGGGTTTCTCACTGACGGAAACTGACAATAA
GTTCGAATCatggaaagatttgaataatagaagttcgaataagcctGAGT
CAACTGTACTTCACGGAAGAGGTCTCAGCAAAAGGTAGCTCTGATATTCG
CACTGTTCATATATCTGTCAAATATTGACCAGGGATACACCTATCAACTC
TCAAAGCTGATGGGGACTGGGTTTGAGTTTACAGGGGAAGAGCGACGTCT
TCAAAATGTCTGAAgtcaatgtttttatttcataGACACGTCATTTtggc
ttcattttttcttggTAGACTGGACCCGATCCCTTTGAAGCATTTAGGAT
TGATAGATATGTTTTGATGTTTAATTCTTCTTTCACATTCGCAGGTTCCT
CAAGTGATTCCAATACGAAAATATTTCATTAATTTCACTAAATGGCATCA
GCTTCCAAAACCTGAAAACGAGACTAGTCCTGTTGCCATGACAActtcaa
acattcgaaaagagATCATCGACAAAGAATGGGCTTACATCATCGACGTC
ACTCTGAACCCTGAGGTTTATCCAAGTGATACTTCGCCCAACCAACTACA
AAGATGTGCGCTTGTCGAACTCGTTTTTCGACACATCGAGTCAAAACACT
CTTTGCAATTTTCACGAAAGTTTGAATTTTGTGAAGAAAATTACATTGGA
AATAGAGACAGCTTGCTCGACTTTATTTGTCCGAGTGCtgtcaaaaataa
attgaacAATGCTCTGAATGGTACTGAAAATAACCTGACGTTAGATCAAA
TCCGTAACCTATCCAAAGGaaaagagaacaataacataGTGACAGGTAAC
CAAACGAAGACGGGGATGTCGAGGAAGTCACAAACAACTCCGGCATCTGT
TGAAACCATNGAACTCGTTTTTCGACACATCGAGTCAAAACACTCTTTGC
AATTTTCACGAAAGTTTGAATTTTGTGAAGAAAAATACATTGGAAATAGA
GACAGCTTGCTCGACTTTATTTGTCCTAGTGCtgtcaaaaataaattgaa
cAATGCTCTGAATGGTACTGAAAATAACCTGACGTTAGATCAAATCCGTA
ACCTATCCAAAGGAAAAGAGAACAATAAAATAGTGACAGGTAACCAAACG
AAGTCAGGAATGTCAAAGAAGTCACAACCAACTCCGGCATCTGTTGAAAC
CATCAAAACATCGTCTGGTGAGTCTGTAGATTCTATGAAAGAATTGAAAA
CGAAGACGTTAGGAAGTCACCATGGCAACAAGACAAGATTGCCGGCACCG
AAGGTTGAGATGATGGTGAATAAAGATGGTGGAAATATCGAATTGAGGAT
TGAGTTGCCGAAGGTTGACTCTGTTGCTGAATGTGATCTGGAAATTACTG
AGGTGAGCTTTACTTTCATGGAAACTAAAACTGTTATTTGGATTTATTCA
TTGTAGGAGTTCTGAGGACCTTTGAAAAATCTAGTGATCTTAGTGCGGGA
ATGGGAATCTTACGCAAAACGATTTGGATTTGGGCGACCATTCTATCATT
GGTCAGACTGTTTCAAGTTTCATATTCTAATCTTTCGACCATTATCATTT
ATTTCAACTGCTTCGGTGAAATCCAGCTCCTTTCACGGCTGTTTGGTGgc
aacatttatttttcttttttttcagaattgtGTGATGTTAGAAGTGCCAC
AGAAATACAAACTGGATTTCACCTTCCCACTAAAAGTAGACTTTGATGAA
GCCAATGCGAAATTTATCAAGGACCGAAAAGTCTTGCTGATTATTGCACC
GATCGACAAATGAGCGAGCTTTCAAACGATAAATTGATATGGagaaacaa
agtcaaaatggaGTTGCTGCTACCGGAAATTATTCTCGAGAATGATATTT
TAGAAGCAGAGAGACTTAAATATAAGACTTTACATCAAAATAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005140-exon-sc0000051-1491911889:556970..557274 | TCONS_00005140-exon-sc0000051-1491911889:556970..557274 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1510915933:556970..557274 | TCONS_00005140-exon-sc0000051-1510915933:556970..557274 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1575043694:556970..557274 | TCONS_00005140-exon-sc0000051-1575043694:556970..557274 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1491911889:557814..558821 | TCONS_00005140-exon-sc0000051-1491911889:557814..558821 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1510915933:557814..558821 | TCONS_00005140-exon-sc0000051-1510915933:557814..558821 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1575043694:557814..558821 | TCONS_00005140-exon-sc0000051-1575043694:557814..558821 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1491911889:559095..559364 | TCONS_00005140-exon-sc0000051-1491911889:559095..559364 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1510915933:559095..559364 | TCONS_00005140-exon-sc0000051-1510915933:559095..559364 | Clytia hemisphaerica | exon |
| TCONS_00005140-exon-sc0000051-1575043694:559095..559364 | TCONS_00005140-exon-sc0000051-1575043694:559095..559364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:556970..559364 + |
Blast
The following BLAST results are available for this feature:
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