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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005139 ID=TCONS_00005139|Name=TCONS_00005139|organism=Clytia hemisphaerica|type=transcript|length=2129bpRun BLAST on NCBI protein sequence of TCONS_00005139-protein >TCONS_00005139-protein ID=TCONS_00005139-protein|Name=TCONS_00005139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp MSSVSVISAGSQASTRSNASRIKSRRYRVTSHTSQVDESLFGTRSTSAPNRun BLAST on NCBI transcript from alignment at sc0000051:546624..556611+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005139 ID=TCONS_00005139|Name=TCONS_00005139|organism=Clytia hemisphaerica|type=transcript|length=9988bp|location=Sequence derived from alignment at sc0000051:546624..556611+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:546624..556611+ >TCONS_00005139 ID=TCONS_00005139|Name=TCONS_00005139|organism=Clytia hemisphaerica|type=CDS|length=19872bp|location=Sequence derived from alignment at sc0000051:546624..556611+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005139 vs. Swiss-Prot (Human)
Match: CFA45 (Cilia- and flagella-associated protein 45 OS=Homo sapiens GN=CFAP45 PE=1 SV=2) HSP 1 Score: 296.975 bits (759), Expect = 1.166e-90 Identity = 238/528 (45.08%), Postives = 354/528 (67.05%), Query Frame = 1
Query: 211 RYRVTSHTSQVDESLFG-TRSTSXXXXXXXXXXXXXVKTKTRTTSA---PKKQEVIQVITKDMIRKLRVPREDPSGQSLVLQSNHFFRIRNSARVLTKKEREEVMEYMKSEKKKLQDESEDRKHFMQNMEQKRLKNEKLSDLEQEAKEKSQYLLQKAHEQMEEQEDEIKKLNELILNAKCHAIRDNQXXXXXXXXXXXXXXDKRLDQMMESDRLRVLAAYEDRDSSKRMERFKGAQVLHQQIEENEQSRLLEQEKKDQETKAMLQYLEKLKHEDMDALIKKRDNQKTILKDVARANDEIQKMKDFQKEREKMEDQKVMEYLKDKQAREEAYEKEKEQARLEKEKEIARLRAQQERAKDKQAEKDXXXXXXXXXXXXXXXXKKVKEEATKKASMESHLREARKEQIQNKEHFFAVQAARDRAEFERVLNAQFEQVEREKVVEDDFQQRRAVYAEDVRTQIKEKEKERVHARQSFFHEGIKLDQEAKERRQXXXXXXXXXXXXXXXAGVPNKYVTEVARRIEAQPPTLSN 1782
RYR + +S+VDESLFG +S + + T +T +A +K E IQ+IT+DM+R+L VP EDPSG+SL++ F RI+ ++ VLT++E E + K EK+ D RK M+ E N+KLSDLE+ AKE++Q LLQ+A++ EQE+E+K ++++ILNAKCHAIRD Q++EK +I+KE+ E+KRLDQMME +R + + E+ + +R ER +G + + +Q+E+N++ R L E+++QE + ML+Y+E+L+ ED+ + +++ + + ++ R NDE QK K +EK+ DQ VME+ K K ARE +E E+E+ R EKEKEIARLRA QE+A+D QAE+DALRA+RNQE A+REWR+K KE A KK E+ LR++R EQ+ KEH AVQ RDR EFER+L AQ EQ+E+E++ E+ R +A ++R Q++E +++ V R + F EG +L +EA++RR+++DEIKR+KL+EL G+P KY E R+ P T N
Sbjct: 24 RYRTKAVSSEVDESLFGDIKSPAQGQSDSPIVLLRDKHTLQKTLTALGLDRKPETIQLITRDMVRELIVPTEDPSGESLIISPEEFERIKWASHVLTREELEARDQAFKKEKEATMDAVMTRKKIMKQKEMVWNNNKKLSDLEEVAKERAQNLLQRANKLRMEQEEELKDMSKIILNAKCHAIRDAQILEKQQIQKELDTEEKRLDQMMEVERQKSIQRQEELERKRREERIRGRRQIVEQMEKNQEERSLLAEQREQEKEQMLEYMEQLQEEDLKDMERRQQQKLKMQAEIKRINDENQKQKAELLAQEKLADQMVMEFTKKKMAREAEFEAEQERIRREKEKEIARLRAMQEKAQDYQAEQDALRAKRNQEVADREWRRKEKENARKKMETEAELRKSRLEQVAFKEHALAVQVQRDRDEFERILRAQREQIEKERLEEEKKATGRLQHANELRRQVRENQQKEVQNRIATFEEGRRLKEEAQKRRERIDEIKRKKLEELRATGLPEKYCIEAERKANILPATSVN 551 The following BLAST results are available for this feature:
BLAST of TCONS_00005139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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