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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005136 ID=TCONS_00005136|Name=TCONS_00005136|organism=Clytia hemisphaerica|type=transcript|length=1480bp
GTGAGAGTTCAAAATATAGACAACAAACAAAATGTCAACGAAAAACATAA
AATCGATGTTCATGCCGTCAGGCGCATCTGTCCGAAATATTCCACCTCTA
TCCCTGggaaatgattttaaaattttgacgaGCCGAACACAAGGATTTCA
CCATTCTGGTAAATGGTTTTTGATGCGCGAAGATCCGGCAAATGAAAGGA
ACATACAGATTCATATAATTTGCGTCAATCCGCAAACATTAAATTACGAA
CACAAGTTATTTATTGTAAAAACCCCCGTGTTCACAGACCGTACCCAGAT
TGCCACTTCATTTGATCCTGAAAGCGGGAGACTTCTACTTCGGGCCAAAA
GATCCACAAACAATGAACTGGTTATAAACATTCATTTTCTCGATATCTCC
GATTTTTTACCGTTAAAATTCAAGAAGCTTTTTATTGAGCTCAGCCCGTC
TGACTTCACGAAAAGCTACTCAAAACGAGATTTCAACGAGGTTAGATCTA
GTTTCGATGGAAAGAAGTTGATATTTTCAGCATTTCACCAACCGGAAAAT
ACTGTTCACGTCAATGAGCAAGGTTTGATTCTTGAACGTTATTCGCCGCG
TGCGTGCATCGATGTCTACAATCAAGAAAGGGGCGAATTTGTTCACGCCA
AACATGTGTTGATTGACTTCAATGTCCCAATGCTGGAGAGTTGCCCAAGT
TTCTCACACACGGAcgataaactttatttttattacGAGTTCCCAGATGA
CCAAATTCAAAATGATGTTTTCAAGCTGTTCGATTTCAGTGCAGATGGAG
TTTTTCAGAATCTTTATTCATTTGAGTGTTCCAACTTTATGGTTAAGTTT
TATGCAGACAGAAACCTGCTCTTCTTGCACCCAGTTCAGGGTGAAATCGA
AGGTGGAGTTGTTCGCTTATTGAGATTAGAGAGCGGAGAAATCACTTTGG
TTGAAGAATTTGACGcctcttttctttttaaaacaagGATGGAAGATCAA
TATTTTATTCTAAAGTCGACAATCCAAAGATTCGATCACTTTTTGGTGAC
CATACTTTCACAGCAAGACCACACACCACCAAGATATTATCACTTCGACG
CTATCGATTTGTTCTCAAAGCAAATAATTTCTCAAGCATGCGACGCAGCC
GTTATTCTCCCGAACTTCATTTTGAATTGGAACATCGAGGAAATCGGAGT
GACGTATTTTAAAGACCAACCCTCTTTGGTAGGAAATGGAGAACTGTTCT
TCAAAATCTCGCCCTTCAAAGGATATCAAACGTCACTGAAACATTTAGCA
CGTTTAgtagtgatgacgtcattcgaCCGTGACTTTCTGGTCAAACAAAA
TCTTCCGAACTCGTTGTTTGATTACCTCGGTATCAAAAAGTgaataattc
tcttttttttttgtcttatgTTGATATTTAGATGAAATTAACTCCTTCCT
TATCACTCAGCTATGAGGTTTACAAATTCG Run BLAST on NCBI protein sequence of TCONS_00005136-protein >TCONS_00005136-protein ID=TCONS_00005136-protein|Name=TCONS_00005136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
MSTKNIKSMFMPSGASVRNIPPLSLGNDFKILTSRTQGFHHSGKWFLMRE
DPANERNIQIHIICVNPQTLNYEHKLFIVKTPVFTDRTQIATSFDPESGR
LLLRAKRSTNNELVINIHFLDISDFLPLKFKKLFIELSPSDFTKSYSKRD
FNEVRSSFDGKKLIFSAFHQPENTVHVNEQGLILERYSPRACIDVYNQER
GEFVHAKHVLIDFNVPMLESCPSFSHTDDKLYFYYEFPDDQIQNDVFKLF
DFSADGVFQNLYSFECSNFMVKFYADRNLLFLHPVQGEIEGGVVRLLRLE
SGEITLVEEFDASFLFKTRMEDQYFILKSTIQRFDHFLVTILSQQDHTPP
RYYHFDAIDLFSKQIISQACDAAVILPNFILNWNIEEIGVTYFKDQPSLV
GNGELFFKISPFKGYQTSLKHLARLVVMTSFDRDFLVKQNLPNSLFDYLG
IKK Run BLAST on NCBI transcript from alignment at sc0000051:422316..424753+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005136 ID=TCONS_00005136|Name=TCONS_00005136|organism=Clytia hemisphaerica|type=transcript|length=2438bp|location=Sequence derived from alignment at sc0000051:422316..424753+ (Clytia hemisphaerica)
GTGAGAGTTCAAAATATAGACAACAAACAAAATGTCAACGAAAAACATAA
AATCGATGTTCATGCCGTCAGGCGCATCTGTCCGAAATATTCCACCTCTA
TCCCTGggaaatgattttaaaattttgacgaGCCGAACACAAGGATTTCA
CCATTCTGGTAAATGGTTTTTGATGCGCGAAGATCCGGCAAATGAAAGGA
ACATACAGATTCATATAATTTGCGTCAATCCGCAAACATTAAATTACGAA
CACAAGTTATTTATTGTAAAAACCCCCGTGTTCACAGACCGTACCCAGAT
TGCCACTTCATTTGATCCTGAAAGCGGGAGACTTCTACTTCGGGCCAAAA
GATCCACAAACAATGAACTGGTTATAAACATTCATTTTCTCGATATCTCC
GATTTTTTACCGTTAAAATTCAAGAAGCTTTTTATTGAGCTCAGCCCGTC
TGACTTCACGAAAAGCTACTCAAAACGAGATTTCAACGAGGTTAGATCTA
GTTTCGATGGAAAGAAGTTGATATTTTCAGCATTTCACCAACCGGAAAAT
ACTGTTCACGTCAATGAGCAAGGTTTGATTCTTGAACGTTATTCGCCGCG
TGCGTGCATCGATGTCTACAATCAAGAAAGGGGCGAATTTGTTCACGCCA
AACATGTGTTGATTGACTTCAATGTCCCAATGCTGGAGAGTTGCCCAAGT
TTCTCACACACGGAcgataaactttatttttattacGAGTTCCCAGATGA
CCAAATTCAAAATGATGTTTTCAAGCTGTTCGATTTCAGTGCAGATGGAG
TTTTTCAGAATCTTTATTCATTTGAGTGTTCCAACTTTATGGTTAAGTTT
TATGCAGACAGAAACCTGCTCTTCTTGCACCCAGTTCAGGTATTTTACTT
CATTCATTGATctataatacacgcttttttatataagaatatcttctata
agaatatctgggtgaaaattggctaaatcgtaagaataccctctagggtg
aatttcacagaatttgataagaatacagtcattttgtatgcGGTTAACAG
AAAAAGCTACTTCttttgttagagataaattgaagctttgagaaagaaat
gtaatttttacccaaatgttcactcaaaagtccaaaactctcaaattgat
cactCCTCGTGTTTgtaaaaagtcaagtctaaaaaagtaagaatatttta
ccctcaattttggcactttcttaagaatacttggccctcatccaaagtac
actattcttataataaaaaaagcgtgtattttaattttataaaaacaacg
aGGCTCAGAAATGccccaaaaaatgaaaacaattgaaGAACAGCCCTCAG
CCTGGAATGATTGAATTTTGTGCAAATTGAGGCTCAAAACAGGATATGAA
CAACTTGTGGCTAAAAGcgtccaaaaaaataagaagagctgagcctcaac
aaaaatttgctggttcttacaaaaaagatATGTGTACTCGAATCCTGGAC
AGAAAACCAAAAGGAAATCacacattttgacaaaatattggTGTAAAATA
TTAGCTCAACATCAATTGGGGAAGGAGGGcgaaattctaaaaaaattgtg
aTCATAGCTTTATAATGACCATTATAGACTACAATGGACTCCGCTAATTT
ATCTTTCGAACTGAGCCTTCATTCCCTCAAGAGGAAaccctctataattc
gaatttctctgtaattcgacTAAATTTAACCTCCCTTTTCAAGTTTCAAA
AAGATGAGAGTTAACTGTTTATTTTCTCCTTGCTTGCTCTCCAATATGAA
CTGGAACTTTGAACCAATTCAAATTataatattgtttttatttacagGGT
GAAATCGAAGGTGGAGTTGTTCGCTTATTGAGATTAGAGAGCGGAGAAAT
CACTTTGGTTGAAGAATTTGACGcctcttttctttttaaaacaagGATGG
AAGATCAATATTTTATTCTAAAGTCGACAATCCAAAGATTCGATCACTTT
TTGGTGACCATACTTTCACAGCAAGACCACACACCACCAAGATATTATCA
CTTCGACGCTATCGATTTGTTCTCAAAGCAAATAATTTCTCAAGCATGCG
ACGCAGCCGTTATTCTCCCGAACTTCATTTTGAATTGGAACATCGAGGAA
ATCGGAGTGACGTATTTTAAAGACCAACCCTCTTTGGTAGGAAATGGAGA
ACTGTTCTTCAAAATCTCGCCCTTCAAAGGATATCAAACGTCACTGAAAC
ATTTAGCACGTTTAgtagtgatgacgtcattcgaCCGTGACTTTCTGGTC
AAACAAAATCTTCCGAACTCGTTGTTTGATTACCTCGGTATCAAAAAGTg
aataattctcttttttttttgtcttatgTTGATATTTAGATGAAATTAAC
TCCTTCCTTATCACTCAGCTATGAGGTTTACAAATTCG Coding sequence (CDS) from alignment at sc0000051:422316..424753+ >TCONS_00005136 ID=TCONS_00005136|Name=TCONS_00005136|organism=Clytia hemisphaerica|type=CDS|length=2724bp|location=Sequence derived from alignment at sc0000051:422316..424753+ (Clytia hemisphaerica)
ATGTCAACGAAAAACATAAAATCGATGTTCATGCCGTCAGGCGCATCTGT
CCGAAATATTCCACCTCTATCCCTGggaaatgattttaaaattttgacga
GCCGAACACAAGGATTTCACCATTCTGGTAAATGGTTTTTGATGCGCGAA
GATCCGGCAAATGAAAGGAACATACAGATTCATATAATTTGCGTCAATCC
GCAAACATTAAATTACGAACACAAGTTATTTATTGTAAAAACCCCCGTGT
TCACAGACCGTACCCAGATTGCCACTTCATTTGATCCTGAAAGCGGGAGA
CTTCTACTTCGGGCCAAAAGATCCACAAACAATGAACTGGTTATAAACAT
TCATTTTCTCGATATCTCCGATTTTTTACCGTTAAAATTCAAGAAGCTTT
TTATTGAGCTCAGCCCGTCTGACTTCACGAAAAGCTACTCAAAACGAGAT
TTCAACGAGGTTAGATCTAGTTTCGATGGAAAGAAGTTGATATTTTCAGC
ATTTCACCAACCGGAAAATACTGTTCACGTCAATGAGCAAGGTTTGATTC
TTGAACGTTATTCGCCGCGTGCGTGCATCGATGTCTACAATCAAGAAAGG
GGCGAATTTGTTCACGCCAAACATGTGTTGATTGACTTCAATGTCCCAAT
GCTGGAGAGTTGCCCAAGTTTCTCACACACGGAcgataaactttattttt
attacGAGTTCCCAGATGACCAAATTCAAAATGATGTTTTCAAGCTGTTC
GATTTCAGTGCAGATGGAGTTTTTCAGAATCTTTATTCATTTGAGTGTTC
CAACTTTATGGTTAAGTTTTATGCAGACAGAAACCTGCTCTTCTTGCACC
CAGTTCAGGGTGAAATCGAAGGTGGAGTTGTTCGCTTATTGAGATTAGAG
AGCGGAGAAATCACTTTGGTTGAAGAATTTGACGcctcttttctttttaa
aacaagGATGGAAGATCAATATTTTATTCTAAAGTCGACAATCCAAAGAT
TCGATCACTTTTTGGTGACCATACTTTCACAGCAAGACCACACACCACCA
AGATATTATCACTTCGACGCTATCGATTTGTTCTCAAAGCAAATAATTTC
TCAAGCATGCGACGCAGCCGTTATTCTCCCGAACTTCATTTTGAATTGGA
ACATCGAGGAAATCGGAGTGACGTATTTTAAAGACCAACCCTCTTTGGTA
GGAAATGGAGAACTGTTCTTCAAAATCTCGCCCTTCAAAGGATATCAAAC
GTCACTGAAACATTTAGCACGTTTAgtagtgatgacgtcattcgaCCGTG
ACTTTCTGGTCAAACAAAATCTTCCGAACTCGTTGTTTGATTACCTCGGT
ATCAAAAAGTgaATGTCAACGAAAAACATAAAATCGATGTTCATGCCGTC
AGGCGCATCTGTCCGAAATATTCCACCTCTATCCCTGggaaatgatttta
aaattttgacgaGCCGAACACAAGGATTTCACCATTCTGGTAAATGGTTT
TTGATGCGCGAAGATCCGGCAAATGAAAGGAACATACAGATTCATATAAT
TTGCGTCAATCCGCAAACATTAAATTACGAACACAAGTTATTTATTGTAA
AAACCCCCGTGTTCACAGACCGTACCCAGATTGCCACTTCATTTGATCCT
GAAAGCGGGAGACTTCTACTTCGGGCCAAAAGATCCACAAACAATGAACT
GGTTATAAACATTCATTTTCTCGATATCTCCGATTTTTTACCGTTAAAAT
TCAAGAAGCTTTTTATTGAGCTCAGCCCGTCTGACTTCACGAAAAGCTAC
TCAAAACGAGATTTCAACGAGGTTAGATCTAGTTTCGATGGAAAGAAGTT
GATATTTTCAGCATTTCACCAACCGGAAAATACTGTTCACGTCAATGAGC
AAGGTTTGATTCTTGAACGTTATTCGCCGCGTGCGTGCATCGATGTCTAC
AATCAAGAAAGGGGCGAATTTGTTCACGCCAAACATGTGTTGATTGACTT
CAATGTCCCAATGCTGGAGAGTTGCCCAAGTTTCTCACACACGGAcgata
aactttatttttattacGAGTTCCCAGATGACCAAATTCAAAATGATGTT
TTCAAGCTGTTCGATTTCAGTGCAGATGGAGTTTTTCAGAATCTTTATTC
ATTTGAGTGTTCCAACTTTATGGTTAAGTTTTATGCAGACAGAAACCTGC
TCTTCTTGCACCCAGTTCAGGGTGAAATCGAAGGTGGAGTTGTTCGCTTA
TTGAGATTAGAGAGCGGAGAAATCACTTTGGTTGAAGAATTTGACGcctc
ttttctttttaaaacaagGATGGAAGATCAATATTTTATTCTAAAGTCGA
CAATCCAAAGATTCGATCACTTTTTGGTGACCATACTTTCACAGCAAGAC
CACACACCACCAAGATATTATCACTTCGACGCTATCGATTTGTTCTCAAA
GCAAATAATTTCTCAAGCATGCGACGCAGCCGTTATTCTCCCGAACTTCA
TTTTGAATTGGAACATCGAGGAAATCGGAGTGACGTATTTTAAAGACCAA
CCCTCTTTGGTAGGAAATGGAGAACTGTTCTTCAAAATCTCGCCCTTCAA
AGGATATCAAACGTCACTGAAACATTTAGCACGTTTAgtagtgatgacgt
cattcgaCCGTGACTTTCTGGTCAAACAAAATCTTCCGAACTCGTTGTTT
GATTACCTCGGTATCAAAAAGTga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005136-exon-sc0000051-1491911889:422316..423204 | TCONS_00005136-exon-sc0000051-1491911889:422316..423204 | Clytia hemisphaerica | exon |
| TCONS_00005136-exon-sc0000051-1510915933:422316..423204 | TCONS_00005136-exon-sc0000051-1510915933:422316..423204 | Clytia hemisphaerica | exon |
| TCONS_00005136-exon-sc0000051-1575043694:422316..423204 | TCONS_00005136-exon-sc0000051-1575043694:422316..423204 | Clytia hemisphaerica | exon |
| TCONS_00005136-exon-sc0000051-1491911889:424163..424753 | TCONS_00005136-exon-sc0000051-1491911889:424163..424753 | Clytia hemisphaerica | exon |
| TCONS_00005136-exon-sc0000051-1510915933:424163..424753 | TCONS_00005136-exon-sc0000051-1510915933:424163..424753 | Clytia hemisphaerica | exon |
| TCONS_00005136-exon-sc0000051-1575043694:424163..424753 | TCONS_00005136-exon-sc0000051-1575043694:424163..424753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:422316..424753 + |
Blast
The following BLAST results are available for this feature:
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