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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005129 ID=TCONS_00005129|Name=TCONS_00005129|organism=Clytia hemisphaerica|type=transcript|length=3484bpRun BLAST on NCBI protein sequence of TCONS_00005129-protein >TCONS_00005129-protein ID=TCONS_00005129-protein|Name=TCONS_00005129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp MKAQIVILSSLLVLPILFAAKDKVTCDNIFCAEGQECVEKKTGAVCECMERun BLAST on NCBI transcript from alignment at sc0000051:269863..276737+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005129 ID=TCONS_00005129|Name=TCONS_00005129|organism=Clytia hemisphaerica|type=transcript|length=6875bp|location=Sequence derived from alignment at sc0000051:269863..276737+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:269863..276737+ >TCONS_00005129 ID=TCONS_00005129|Name=TCONS_00005129|organism=Clytia hemisphaerica|type=CDS|length=8640bp|location=Sequence derived from alignment at sc0000051:269863..276737+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005129 vs. Swiss-Prot (Human)
Match: FSTL1 (Follistatin-related protein 1 OS=Homo sapiens GN=FSTL1 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 4.006e-46 Identity = 103/277 (37.18%), Postives = 152/277 (54.87%), Query Frame = 1
Query: 346 FAAKDKVTCDNIFCAEGQEC-VEKKTGAVCECMEKCESGYQPVCGSNGTLMTTFDNRCELFRQSCLLE-------NSHDKSIKFVAPTTCEKALXXXXXXXXXXXXXXXXXXVVCKQKERNNLREAIITFIKARVEEN---VETVSYKGLLFKYFHMFDADEDQMLDTMEFVKMVEK-DMAESELKFKDPTSNPLLRGLCLSELIAITDVNSNYKLEFEEFHKCLDPTFKPPHQRCELNGKIYEDGNKVPFNCNTCECACGHWVCTRFNCNDNSSRN 1140
+K K+ C N+FC G+EC V +K C C+E+C+ +PVCGSNG T+ N CEL R +CL + H K K V+P+ PVVC Q R+ LR II +++A + + + +Y +L KYF FD + D LD+ EF+K VE+ + A + + D +N LLRGLC+ LI ++D N+++KL F+EF KCL+P+F PP ++C L + Y DG + +CN C CACG+WVCT C+ + +
Sbjct: 24 LRSKSKI-CANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGK---TYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPSA---------------------SPVVCYQSNRDELRRRIIQWLEAEIIPDGWFSKGSNYSEILDKYFKNFD-NGDSRLDSSEFLKFVEQNETAINITTYPDQENNKLLRGLCVDALIELSDENADWKLSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCACGNWVCTAMTCDGKNQKG 274 The following BLAST results are available for this feature:
BLAST of TCONS_00005129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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