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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005128 ID=TCONS_00005128|Name=TCONS_00005128|organism=Clytia hemisphaerica|type=transcript|length=1945bpRun BLAST on NCBI protein sequence of TCONS_00005128-protein >TCONS_00005128-protein ID=TCONS_00005128-protein|Name=TCONS_00005128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp MTEPIFKEISAEESESGITELESLCMECHENGTTRLLLTRIPFFKEVILSRun BLAST on NCBI transcript from alignment at sc0000051:211811..230642+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005128 ID=TCONS_00005128|Name=TCONS_00005128|organism=Clytia hemisphaerica|type=transcript|length=18832bp|location=Sequence derived from alignment at sc0000051:211811..230642+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:211811..230642+ >TCONS_00005128 ID=TCONS_00005128|Name=TCONS_00005128|organism=Clytia hemisphaerica|type=CDS|length=17043bp|location=Sequence derived from alignment at sc0000051:211811..230642+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005128 vs. Swiss-Prot (Human)
Match: ZPR1 (Zinc finger protein ZPR1 OS=Homo sapiens GN=ZPR1 PE=1 SV=1) HSP 1 Score: 438.728 bits (1127), Expect = 5.306e-147 Identity = 211/425 (49.65%), Postives = 297/425 (69.88%), Query Frame = 3
Query: 84 IFKEISAEESESGITELESLCMECHENGTTRLLLTRIPFFKEVILSSFECEHCGLKNNEIKSASEIQKKGVKYKLKINGSKDLSRQVVRQSSAMFRIDEIDFEAPAFTSKGALTTIEGMLQTAIDGLEQQQPVRKIMEPVLAEKISEIISILDKYKSGDIPFTLILEDISGNSFIENPRAPEQDPAMMVTQFVRTSEQSEQLGLXXXXXXXXXXXXXXXLAPEEVYEFPGNCHSCGTPVVTKMKMLQIPHFKEVVIMSSNCEACGEKSNEIKAGGGIEDQGTKISLTLTDPTDLSRDVLTSETCIVSIPELDMELSHSSDAGRFTTIEGLLNNIKTGVGRINPFAFGDSAGDKEKTKVTKITDQIQEIIDGKLFVTLVFDDPVGNSHVQNLYAPDPDPNLTVEKYDRTAEQELDLGIADMKIYKY 1358
+F+ ISAE+ E TE+ESLCM C+ NG TRLLLT+IPFF+E+I+SSF CEHCG N EI+SA IQ +GV+Y L + +D++R+VV+ SA RI E+DFE PAF+ KGALTT+EG++ AI GLEQ QP R+ + AE+I E I L + K PFTLI++D SGNSF+ENP AP++D A+++T + RT +Q E LGL EE ++ E + EV +F NC C P T MK++QIPHFKEV+IM++NCE CG ++NE+K+GG +E GT+I+L +TD +D++RD+L SETC V IPEL+ EL + G+FTT+EGLL +I+ V + NPF GDS+ + ++ + + ++ +II+G + + DDP GNS++QN+YAP+ DP + VE+Y RT +Q +LG+ DMK Y
Sbjct: 31 LFRPISAEDEEQQPTEIESLCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEAPAEKPEEEDLR---NEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELVTK-NPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAPEDDPEMKVERYKRTFDQNEELGLNDMKTEGY 451 The following BLAST results are available for this feature:
BLAST of TCONS_00005128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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