TCONS_00005126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005126
Unique NameTCONS_00005126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005126 ID=TCONS_00005126|Name=TCONS_00005126|organism=Clytia hemisphaerica|type=transcript|length=593bp
CATCAGAGTTGGATCAACAGAGAAGGAACAGCTGATACCAGTCCTGTGCA
CTATGCTCAAGTTGAGCGATGATGAACGAAATGACATCACTGAATTCGCT
AGAGGTGACAGAGACGGCGAAGAAGACGATCATAACAAAACTTGGTCAAG
TTATCTTTACCGATGGACCTAAATCACATTTGTAAGACTTCGTTACTGTA
TCTCTGGAGATGTATATTCAATGAAAATTCATCTTGAATTTTATATCTAT
AAATTCACAGATGTGCTAGAGTTTTTGTAACAGATTTTCCCCTCCGCCAT
CGGTCAGACTTCGTTTTTTCGCATTTAAACAAATCTTTATGGACATATTA
TTTTActatttatttattatatattgaattgaattgatttatatttttta
caaaattttgctGCTTATCCTTTTGAGAGGTGGGTGGAATCTCAAAGAGA
TTAAATTATGAGGAATGGTTTCCTTTCTATAACTTGGTGAATTTCTTTtt
ggatgtaaataatttttctaaagGGTGTATAAGTGGAATTGCTTAATTAA
AAGAGAAATTTATATGAATTTGAAATCATGATGATTAATTATT
Run BLAST on NCBI

transcript from alignment at sc0000051:169192..170233+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005126 ID=TCONS_00005126|Name=TCONS_00005126|organism=Clytia hemisphaerica|type=transcript|length=1042bp|location=Sequence derived from alignment at sc0000051:169192..170233+ (Clytia hemisphaerica)
CATCAGAGTTGGATCAACAGAGAAGGAACAGCTGATACCAGTCCTGTGCA
CTATGCTCAAGTTGAGCGATGATGAACGAAATGACATCACTGAATTCGCT
AGAGGTACATAAACACGCTTGTAAAGATTCGTTTTAGAAGTTTAGATAAG
CTATCAATGATTTTCATATCATCTCTTATGAGTTTCTAATCTAttttcga
aaatgttttccCAATCTGATTTATCCTGGATATTCGGTTTCGGCCCAATG
GTCTCGGCAGAATCAGTCCCCTACATCATTTTGCAATACACGCGAAATGA
TCAGATGATTATCTTCATTCAACCGTATTAATGTCGAGAAGTTCACTACC
AGTTCAAATTCTTAATATGATACTAATCGTTTTACTGGCGTCACTAAGTA
CCTTATCggcaaaacttagtcggccctaagtgactaaattttggcttggt
gactaaaattagggccgactaataattaaggccgactaagttttggccga
taaggaaTGACTGAGAAATAACAAAAGGTCTTTCCGTTGATCTTTCTCTT
CAGGTGACAGAGACGGCGAAGAAGACGATCATAACAAAACTTGGTCAAGT
TATCTTTACCGATGGACCTAAATCACATTTGTAAGACTTCGTTACTGTAT
CTCTGGAGATGTATATTCAATGAAAATTCATCTTGAATTTTATATCTATA
AATTCACAGATGTGCTAGAGTTTTTGTAACAGATTTTCCCCTCCGCCATC
GGTCAGACTTCGTTTTTTCGCATTTAAACAAATCTTTATGGACATATTAT
TTTActatttatttattatatattgaattgaattgatttatattttttac
aaaattttgctGCTTATCCTTTTGAGAGGTGGGTGGAATCTCAAAGAGAT
TAAATTATGAGGAATGGTTTCCTTTCTATAACTTGGTGAATTTCTTTttg
gatgtaaataatttttctaaagGGTGTATAAGTGGAATTGCTTAATTAAA
AGAGAAATTTATATGAATTTGAAATCATGATGATTAATTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002920XLOC_002920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005126-exon-sc0000051-1491911889:169192..169295TCONS_00005126-exon-sc0000051-1491911889:169192..169295Clytia hemisphaericaexon
TCONS_00005126-exon-sc0000051-1510915933:169192..169295TCONS_00005126-exon-sc0000051-1510915933:169192..169295Clytia hemisphaericaexon
TCONS_00005126-exon-sc0000051-1575043694:169192..169295TCONS_00005126-exon-sc0000051-1575043694:169192..169295Clytia hemisphaericaexon
TCONS_00005126-exon-sc0000051-1491911889:169745..170233TCONS_00005126-exon-sc0000051-1491911889:169745..170233Clytia hemisphaericaexon
TCONS_00005126-exon-sc0000051-1510915933:169745..170233TCONS_00005126-exon-sc0000051-1510915933:169745..170233Clytia hemisphaericaexon
TCONS_00005126-exon-sc0000051-1575043694:169745..170233TCONS_00005126-exon-sc0000051-1575043694:169745..170233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:169192..170233 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.815	14.3251	4.07974	3.47967	4.98372	3.44593	9.50255	10.6754	8.71979	10.0294	5.6162	12.3678	8.78673	7.84887	7.39715	7.37528	8.11474	10.2367	5.89275	9.14674	11.8806	8.10421	10.1695	11.7496	5.35653	5.7544	11.0216	14.3314	22.0473	18.0747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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