TCONS_00005125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005125
Unique NameTCONS_00005125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005125 ID=TCONS_00005125|Name=TCONS_00005125|organism=Clytia hemisphaerica|type=transcript|length=4288bp
TGACTGGAATGAGTGCATTCAGATACAAACGAATCGAAGACGACCATCTC
GAAACTTGAGGGGAGGATTGAGGAACTTGTCAGTCAACTGCAACGATTAA
ATGAAGAGAAACTGaacCAAGAAACGGAGCTAGAAGAGCTGTTTCAATCT
CAAGATGATCTTCTCAACAAATATGACTTCGAATGCAAGGAGCGAGAGCG
TTCAGAGAAGCAAGTGCGCGCTTTGGAGAAGAAAATGAACGAACTTCAAC
AAGCTGATGAAACTGACCATTCCAGCGGTGAAAGTCAAGAAAAGACCCTC
TCGACACTCAAAGATAACGTGCGCCATCTTGAAACGCAACTAAATGATGT
CAACAAATCACGTGACCAATTAGAGCAGGAGATGttcatcaaagaagaaa
tcattcAACAATTACGTCACGAGATAGATGACATTGGTCGAAAGAACCTT
GAAGTGAATTCGAGCAATAACCAAGAGTTCGAGAAAGTGTTACAGGAGGT
CGCTCAGCTTGATCAGCAACTCAACGCAACAAGATCAGAGATCGAAGAAT
TAACACGAGATCGAGATGAACTCCAATCCATCAACAAAGACCTTCAAACG
TCACTCATACAAACACAGAACACTAACAACTCACTTAAACGAGAATTAAA
CGATTTACAAGAGAATtcaatcgataaacaatcgattCAAAACGAACTCG
ATAATTTGGTCGATGAGAAGAATAAGTTGGAGGAAAATCTTACGAAGAGG
TTAAATGAATTGGAGGGTTTGTTGCACGATAAAGAACTTGTGATCACGGA
GTTGACTGAAAGAGTTAAAAACGATGACCAGACTACACCAAGtgaaaaag
acaacaaagataACTGGGAAACTCGGCTTTCTCAAAGATTTACCGATATC
GAGAGCTTAGAAGCTGAGCTAGATactatttcatttttaagagaTGAGTT
AGCTTCCAAGACGAATGAAATCGAATTATTATCAAATCAAACCGAACGTT
CATTGATGAAAGATTCGATTGATTGTTCGGTGATGACCGATTCAAGTTTC
ATGGATAAATATAAAGAAACTGTACATGAAAACGAGGCTTTGAAGTCTCA
ACTTGACGAGTTAGAGTACGAGAAACAAAAACTACATCAAGCCTATAAAG
AGGTTCGTATCGAGTTAACTCGTTTCTCGTCCACCGAAGAAAATTACGTC
AACGAAACTCACGAACAGAGAACCATTATCGAGCAGCTGAACATGCAAAT
TGCTGGTTTGCAAGGGAAAGAGAGACTAGCTGACCGGCTAGATGAAGAGA
ACCGCTCCTTGAAAGATGACATCGAGAAATTGAACACTGAAATTGCAACG
TTACAAGAAAAGAGTGAGCAGATGAACCAGCTAGGTCGTGATAACCAGAC
TATGAAAGAGGAATTTGATAAATTGATCTCTGAAATCGCTATTTTACGAG
AGAAAGAAAACTTGGTTGACCAGCTAGAGCAACAGAATAAATCTTTTCAG
AACGACTTGGAACAAAGGAACTCAGAAATCacacttttgaaagaaaaaga
gcAACTATTGAACGACATGAGCCAAGAAAATGAATCTTTGAAAGACGGAC
AAACGAGAATACATGAGCTTCACAATGAGGTTACCATTTTGAAAGATTCT
CTAGATGAAACACGTGGTCTTTTAGATCAGTCACGTGGTTTGGTAGAAGA
AAAGACACAGCAACTGGAAAGTCTTCAACGAGAATTTGATCAGAAGGAGA
CGTCGTTTGCGGTGATCACTGGGGAATGCAGTTCATTGAACATCTCTGTG
GAAGAATCGAGGAGTGAGTTGAACGATCTGTCCAAATCTTACGAGCTCAT
TCAAGGTGAAAAACAATCTTTAGAACAGATTTTACAAGAGGTGAAAGAGG
AAAATACGCGTCTAAGTGAAGTGTTTGCGACCAAAGAGCAAGAATTTTCG
AACTTGAAATCTGTTTTGGAGGAGAAAACGCAATTAGTCGATTCGCTGAA
AGATTCACTTGCAAACGAGGCTGATAAAGTTGACGTCATCGAGGAACTGG
AACGAGTCAAGGTTGCTAATGAGAGGTCTGAGACTGAGTTACAATCTGCG
CTTAATCGGTTGGAAGAGCTTGAGCAGGCGTTGAAAACACGGAATGAGGA
ATTGAAAGAGAAATCGGACAAAGCAGCTAAGCTACGTAACGTGGCATTGA
AAGCGAAGAAGGAGCTAGAGAGCATGCGCGGAAAATATGCGGAAGAGAAG
GCGAATAATGAAGAAAAGATGAAGGAGATGGTGGAAGAGGTGAAGTTGTT
GAAGAACGAGTTGGTGCAACAGAAAActcaatgctcaaaacatgaggAGG
AATTCGAGGAGATGcataaagaaatcgaaaatttaaaagaaaaacttcaa
caaGAGCAAAGATCAAGCACATCGAACGCAAGCAGCGTATCAGAACACAT
CGAAAAGATCAAGTCCTTAGTATcagaaaatgatcaaaaagaaaatcgtA
TCGCCGAACTGGAGAAATCTTTCTCCGAGAAAATTGATACGTTAACATTG
AGTAACAGTCAGAAAGAAAACCGTATTTCGGAACTGGAACATTTGAATGC
GGACTCCAAAACAACAATCGAGACTCTATCACGTGACTtggaaaacattc
gaaagagtgTGGATGAGAAAACCACGGAGTGCTCAGAGATGAAGAAAAAG
ATGACTAACATGGAAACTGCCCTACAAAGTGCACATAAGGAGACCACGCA
AATGAACGTTATGAATCTTGAGATCGACGACTACTTGAAAACCATCGAAA
ATCTCAATCAAAAACTACAAACGAAAGATGCGGAATGCGAAGAACTAAAA
AAAGCTAACGAAGAAATGGCTTCTCTGAAGAAAGCAAAGCAGAGTGTGGA
CGAGAAAAATCGTAAAATGAAAAACCTGATCATGAAACTGAAGAAAGAga
ttgaagaaatgaaaagcCAAGCCAATAAGAATGAAGAGGAACATAATGTG
TCACGTGATCAAATTCAAGAGCTCTCATTGGCTATTGAAGATCTGAAAAT
GCAAGTGTCCGAAACTGTccgagaaaaagagaaaatccaAACTGAGCTTC
AACAAAAGCTAGAGATCCAACAAAAATCATACCAAACATTGGAAGTGAAG
TTCAATCGTAGTCATAGTGATATGACGTCATCCCACAATGCATTGGAGGA
GTTGAAGACTGAGTACGAGAGTTACAAAGTGCGCGCGCATAATGTTTTGA
AACAACAGAAAGAAAACAGCAGTAATACATTGGTGGAAAGACATGACGCT
GAAATAGCACGGTTAGAGTCTGTGATCAGTGAACTTCGCAACGAGCTATC
AACGAACAAGGATGAATTGAACGTCACAAAGGATGAGCATGAACAATTGG
AAATTGAATTCGAGAAACAACACGCTCTTCAAGCAGAATTTATGAAAGAG
TTCAACGAGAAAGAAAACAGGTTCAAACACAAGTTTAAGCAAATGAAATC
AGAAGCGGATGCAAAGGATGCTGATcatgaaaacaaaatcaaattgcTCA
TCACTGAGAATAATAAGTTGTTACAATTCACTAAAGGGCAGATGGAGGAT
GTGAAACTCGAGAATGAAGACCATCTCAAGGAGATCGAATCGTTGAAAAA
ACAAATCGGACACTTGAAATCTACGGCAGCCGAAAACACATCACGTGACA
TCAAACGCGAAGATGGATTGGCAGAAAACAAAGGCAGCCATTTATCGTTA
GATTTCGCGGGAAATAAATCACTCATGGAGAGACAAGAAGGCGAGGGGAT
GGACCAGACGGAATTGGAAATCATCGACTCCATCAGCCACCATtCATCTT
CGTCAGTCCCTCAAACACCTCTTTCACCAAGTGCGACCTCCATActggaa
aatattttacaaCACGACTCACCTCAAACACCCCTGGCTATGAAAGATGA
GTTGACACGCTTAAAGTCATCGCTCCAAACCTCCTTGAAGAAGAATGATC
ATATGACAGCTTTATTGCGGGAAAGCGAGGCAAACGCATCACGTCATTAC
GAGCAAGCCATTGTCTTGAAAGAAGAAATTCGACGtTTGGAGCGAAACGA
GAAACGTGAACAAGACTTGTTGAACATGGAATACCTCAAAAATATTATCG
TAAAAGTGAGTAATTATATTGATAAAGGTGGGATGGGCGGACAATGGCCA
GCTTCTTTGACATGCCTGGTTTCCTACTCGTTTCTGTGTCGAGTTCTAAT
GCTAatgtaggctgctggcatccactaacggattcgtg
Run BLAST on NCBI

transcript from alignment at sc0000051:157878..168931+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005125 ID=TCONS_00005125|Name=TCONS_00005125|organism=Clytia hemisphaerica|type=transcript|length=11054bp|location=Sequence derived from alignment at sc0000051:157878..168931+ (Clytia hemisphaerica)
TGACTGGAATGAGTGCATTCAGATACAAACGTAATACCCCTGTATGTAGA
ATTGTAATATGTTGTGCCCTTCTGTCCTTTACAAACATTCTTTACGAACA
TACCACTCTCGAGTCTTTAAAATTATGGAGGGCAACTTGCCTTGTAACAC
AACAATAGCTCTCATAGTTTTTAAATTGTATATTTAAATTCTCTTTCTTC
ACCCTTCCAGGAATCGAAGACGACCATCTCGAAACTTGAGGGGAGGATTG
AGGAACTTGTCAGTCAACTGCAACGATTAAATGAAGAGAAACTGGTAAGG
TTTTTTACCTGAATGAAAAgtttctctatttttttttgtacgAATGGAGA
GAAATTGGTGAAAGGAGAGTGTTACCTTGACCAGTGTGATAGTCTTGTTT
CCTGGGTCTGTGAATTGTGTGGATTGTGAATTGTGAATTACATGATTCAA
AGGTCGCAATCATAGCTTTGTAAACTGCTTCAAACAAACATCGGTCTATT
CAAAATTATTCTTTGGTCTATGTTGgctttgaaatttcctttcaaaatat
tcaagtcCTTCAATAACTTCGCATTTCTGGCTCGTTAAACCTTATAATAA
GCAGTCGTGGAACACTGGCATTACTTAAAATTCGAATCATaactcaaatt
taaaatttgagccttcgagttatggagatagGACAAAGGAGTACAACCTA
CTCTTTTGGATGTGACATTTCTAATCctcttctatttttcagaacCAAGA
AACGGAGCTAGAAGAGCTGTTTCAATCTCAAGATGATCTTCTCAACAAAT
ATGACTTCGAATGCAAGGAGCGAGAGGTAAGAATCAATCAATTAAAGGCC
AAACGAAAAGATTTCACTGTTCTTTCTTACGAATTTGcaaattcattcaa
aataagGCATCGATGTTCGTTCTTTTCTTACGAATGGACAAATTCATTAT
TTTGCAACTTAAAAATGCAACCAAAAAGGCTTCCATTTTGACCATTAGTT
AAAAGTAGAGGTATGGCGACCTTTTAAGTCTTAATTACAGTCTTTCGGTA
ACACCTCTTTGGGTGGAGCCTCTATATTCATTCATTCTTCTACTTTCAGC
GTTCAGAGAAGCAAGTGCGCGCTTTGGAGAAGAAAATGAACGAACTTCAA
CAAGCTGATGAAACTGACCATTCCAGCGGTGAAAGTCAAGAAAAGGTTAG
TGTGACAACCTAAAGTTTGTCCTGAGTATTTGTTGAAATGTGAAATATTG
TCTCGTTTGGTTAGGAAACAATTACGAGTTGGCTGAAGTTTATTTTGGTC
TGATAAAGCTTCCTCCTGTTTTGCTAAAGTTTACCAGTTCGTTACAGTTG
ACTTAcgttaattttcttttttatttttataattttgctTCTGCACAGAC
CCTCTCGACACTCAAAGATAACGTGCGCCATCTTGAAACGCAACTAAATG
ATGTCAACAAATCACGTGACCAATTAGAGCAGGAGATGttcatcaaagaa
gaaatcattcAACAATTACGTCACGAGATAGATGACATTGGTCGAAAGAA
CCTTGAAGTGAATTCGAGCAATAACCAAGAGTTCGAGAAAGTGTTACAGG
AGGTCGCTCAGCTTGATCAGCAACTCAACGCAACAAGGTTCGTACTGCTC
GTTAACTTTAAAAGCAGTTTACAATGAACTCTCTCGCATTTATCGACTTC
TCACAGACGAGCTACAAAAATAGCCGGCTtaaatacacgttttatttATG
CCATTTGTTATGATTTCTTAGAGCGTCTTTAGTGGATACCTTTTTTATTC
CTCTGTCCTGTGATTTTTATTAGCGAGCTTACATATCTGCAATTTTGAAG
ACaatagagtgactgaagcgatttggaataacccgcaatttttaccctca
aaattgaggacggtaaaaatGCTGAGTTACCGTCGTCCTTAgtcaatcag
gatctagacaaatcaagaagctaaccgtctccgttgcagaaaaacacaca
tacacaAACTCGCTATTATTAAGGATAAGGCCTGGTATGTGTTTATAAGG
ACCCTTTGAAACGAGGTGTTGAACACAGCCTAACTAGTGAACAGTCTAAA
TTTCTATGTGATAAACTCGTagattttaagtgttttctcACATTACAAGC
CTGAATATGTATaatatttctttcaattttgtttaCAGATCAGAGATCGA
AGAATTAACACGAGATCGAGATGAACTCCAATCCATCAACAAAGACCTTC
AAACGTCACTCATACAAACACAGAACACTAACAACTCACTTAAACGAGAA
TTAAACGATTTACAAGAGAATtcaatcgataaacaatcgattCAAAACGA
ACTCGATAATTTGGTCGATGAGAAGAATAAGTTGGAGGAAAATCTTACGA
AGAGGTTAAATGAATTGGAGGGTTTGTTGCACGATAAAGAACTTGTGATC
ACGGAGTTGACTGAAAGAGTTAAAAACGATGACCAGACTACACCAAGtga
aaaagacaacaaagataACTGGGAAACTCGGCTTTCTCAAAGATTTACCG
ATATCGAGAGCTTAGAAGCTGAGCTAGATactatttcatttttaagagaT
GAGTTAGCTTCCAAGACGAATGAAATCGAATTATTATCAAATCAAACCGA
ACGTTCATTGATGAAAGATTCGATTGATTGTTCGGTGATGACCGATTCAA
GTTTCATGGATAAATATAAAGAAACTGTACATGAAAACGAGGCTTTGAAG
TCTCAACTTGACGAGTTAGAGTACGAGAAACAAAAACTACATCAAGCCTA
TAAAGAGGTTCGTATCGAGTTAACTCGTTTCTCGTCCACCGAAGAAAATT
ACGTCAACGAAACTCACGAACAGAGAACCATTATCGAGCAGCTGAACATG
CAAATTGCTGGTTTGCAAGGGAAAGAGAGACTAGCTGACCGGCTAGATGA
AGAGAACCGCTCCTTGAAAGATGACATCGAGAAGTTGAACTCTGAAATTG
CAACGTTANCGCTCCTTGAAAGATGACATCGAGAAATTGAACACTGAAAT
TGCAACGTTACAAGAAAAGAGTGAGCAGATGAACCAGCTAGGTCGTGATA
ACCAGACTATGAAAGAGGAATTTGATAAATTGATCTCTGAAATCGCTATT
TTACGAGAGAAAGAAAACTTGGTTGACCAGCTAGAGCAACAGAATAAATC
TTTTCAGAACGACTTGGAACAAAGGAACTCAGAAATCacacttttgaaag
aaaaagagcAACTATTGAACGACATGAGCCAAGAAAATGAATCTTTGAAA
GACGGACAAACGAGAATACATGAGCTTCACAATGAGGTTACCATTTTGAA
AGATTCTCTAGATGAAACACGTGGTCTTTTAGATCAGTCACGTGGTTTGG
TAGAAGAAAAGACACAGCAACTGGAAAGTCTTCAACGAGAATTTGATCAG
AAGGAGACGTCGTTTGCGGTGATCACTGGGGAATGCAGTTCATTGAACAT
CTCTGTGGAAGAATCGAGGAGTGAGTTGAACGATCTGTCCAAATCTTACG
AGCTCATTCAAGGTGAAAAACAATCTTTAGAACAGATTTTACAAGAGGTG
AAAGAGGAAAATACGCGTCTAAGTGAAGTGTTTGCGACCAAAGAGCAAGA
ATTTTCGAACTTGAAATCTGTTTTGGAGGAGAAAACGCAATTAGTCGATT
CGCTGAAAGATTCACTTGCAAACGAGGCTGATAAAGTTGACGTCATCGAG
GAACTGGAACGAGTCAAGGTTGCTAATGAGAGGTCTGAGACTGAGTTACA
ATCTGCGCTTAATCGGTTGGAAGAGCTTGAGCAGGCGTTGAAAACACGGA
ATGAGGAATTGAAAGAGAAATCGGACAAAGCAGCTAAGCTACGTAACGTG
GCATTGAAAGCGAAGAAGGAGCTAGAGAGCATGCGCGGAAAATATGCGGA
AGAGAAGGCGAATAATGAAGAAAAGATGAAGGAGATGGTGGAAGAGGTGA
AGTTGTTGAAGAACGAGTTGGTGCAACAGAAAActcaatgctcaaaacat
gaggAGGAATTCGAGGTAGGTTGGCGTCTCGGCTCTCTTTCCTCACAATC
AGCTTCTCTTTACTTTCTTAATATCAGCTGACTGGTGCCATATAAATGTA
AATTTAGAATTACCTTTAAGgggaaattttggtcaattcaaaaaaatttc
ccacAACACCTTTTAAATTCCCCGGGAAAAGTTATGTGCCGTGGAATATC
TCTTCACTTTTTCCACATCGCAATTCAGccttcaaaaaaacaatttgcta
GACTCATAACTACAAGAGTACAAGCAGGGGACCATCATAAAGACAAACTT
GACTCGTTTATGTCTTCTACTTTTTCCAGGAGATGcataaagaaatcgaa
aatttaaaagaaaaacttcaacaaGAGCAAAGATCAAGCACATCGAACGC
AAGCAGCGTATCAGAACACATCGAAAAGATCAAGTCCTTAGTATcagaaa
atgatcaaaaagaaaatcgtATCGCCGAACTGGAGAAATCTTTCTCCGAG
AAAATTGATACGTTAACATTGAGTAACAGTCAGAAAGAAAACCGTATTTC
GGAACTGGAACATTTGAATGCGGACTCCAAAACAACAATCGAGACTCTAT
CACGTGACTtggaaaacattcgaaagagtgTGGATGAGAAAACCACGGAG
TGCTCAGAGATGAAGAAAAAGATGACTAACATGGAAACTGCCCTACAAAG
TGCACATAAGGTATGTCATATGGCGTATTCATATGGTAAGAGCATAGTTG
TGCAATCCATTCGTTTGCGAGAATTTCCGGTCACATGACCCCCTAAACCT
AAGTTTTGATTTCATTCTAACTTGATGAGACCTGAGATATGATGGGTTTA
AACTCATTTTGGATGGgatcttttaaatatttttcccgTCCTGAAGTTCT
GGTTGTAGGTAAAATATACTATATTTTTCTGATTCTTAGAATTATGGTTT
TATATTAAGTCGATTGTGATTGTATCTTATCTTAGGAGACCACGCAAATG
AACGTTATGAATCTTGAGATCGACGACTACTTGAAAACCATCGAAAATCT
CAATCAAAAACTACAAACGAAAGATGCGGAATGCGAAGAACTAAAAAAAG
CTAACGAAGAAATGGGTAAGAAAATTATATGCTTCTAGTCTCAAAAGAGA
TATTTTCAAAACTATCTACGAGTCCTTTGGTTTTCTCTTCTCATGTTCCG
GTCAACGTATGTAGCTATAATTAAACTAGGCAAAGGCtctgtgaaaattt
ttactatttaccgcattacttcgaataaacgcccagtttttttttgattt
taggaggAGCGTTTAttttcgaagtaatacggtatataCCTCTTATATCC
CTGTTGATTCTATGATTGTATTgcaaacttttattttataaatgtcCTAT
AGAACTAAAAGGACTCTTATAATAAACCTCAATTCATGAACTCACGTAGA
AGGCAATAAAGCTCGATAATAAGTTTTGTATGAAACTTTTCTTTCCAGCT
TCTCTGAAGAAAGCAAAGCAGAGTGTGGACGAGAAAAATCGTAAAATGAA
AAACCTGATCATGAAACTGAAGAAAGAgattgaagaaatgaaaagcCAAG
CCAATAAGAATGAAGAGGAACATAATGTGTCACGTGATCAAATTCAAGAG
CTCTCATTGGCTATTGAAGATCTGAAAATGCAAGTGTCCGAAACTGTccg
agaaaaagagaaaatccaAACTGAGGTTAGTTTTAGCAAAATCTAGTTCT
AGCTTTTTATTTCATGATCGTATTGattttccaagaaatatttaagATCA
ATAAGAATTCGTTAAATGCCCATTCTTAAAATTATATCATTTAATTATTT
CCAATGACAAAATAAGACGCTCACTCCAAGTTCTTGGTATTAAATATTAC
TCGATAACTTGAATAACGAAGTCATCTCTATTTCATTAGCTTCAACAAAA
GCTAGAGATCCAACAAAAATCATACCAAACATTGGAAGTGAAGTTCAATC
GTAGTCATAGTGATATGACGTCATCCCACAATGCATTGGAGGAGTTGAAG
ACTGAGTACGAGAGTTACAAAGTGCGCGCGCATAATGTTTTGAAACAACA
GAAAGAAAACAGCAGTAATACATTGGTGGAAAGACATGACGCTGAAATGT
gagtaaaaacaaaaagtacttaGGAGCTTTTTAGATCTTCTTCATTCGAA
AGGGCATGTTAAAGCTTTTAATCTTTCAATATCTGAAACTaactacaccc
ccttctcaagTCACTGACCCAGTagtaggatttttcagccagcggagtta
aaaataacggactgaaactcggtGGGGATTGATGTTTCCATTTATTTATT
GCCATGGAGTTAATTTTactgttttcaagtcagaaaattcagtggggatg
gaaagatttaacaatattttgcagtttgGATTTGtttaattgattatttt
cagtggggacaaaaatcagagtttaattttccactggggacgatattttg
gcctattttttTCAGTGGGAGGGGTTCCCACcggttctgtgagaaggggt
gtttaACTGTTGGTGattttaagcattttgtctCTTAGGCATTGGAGGGC
GCTCTCTAACATAGCCTAAGCCATCTCCACCTGCTGCTCGCTGCTTTTAC
CGTTCACCGAGCCAAGATAGTATCCAACTATTCAACTATAGGTTCAGCtc
gcaaataaaaaaaaaagagtttcatttttttgaattttcctttATAGAGC
ACGGTTAGAGTCTGTGATCAGTGAACTTCGCAACGAGCTATCAACGAACA
AGGATGAATTGAACGTCACAAAGGATGAGCATGAACAATTGGAAATTGAA
TTCGAGAAACAACACGCTCTTCAAGCAGAATTTATGAAAGAGTTCAACGA
GAAAGAAAACAGGTTCAAACACAAGTAAGTCACCATTTCCAACTTTCAac
tgtatatttttggaataaaTAACCCCTTgtgtcattgaaaacatttcaaa
tagcAATCTCAAATCAGCCTCCGAACCATtttattactagtacaaatatG
TCGTCGAAAACTGACAAAGTGGTCGCAGTCGAATTGAGTTTCAATCCATG
TTTTACACGGAGCCTGTTTGATGACTATTTTAGGGCTCCACTACGATTAG
CACCAATTCGACTATCATTATGATCATATAACGCCAATATCATAATCTAA
CAATGTTCATTATTATGATCGCATAACATACATATTATGATTAATTTATC
CCCAATTAGTTTTCGTATTATAATAGTATATAACGTCAatataatgatga
aaatgtttgTATTATGGTCATATAACGCGTATATTATGATAAAATCATAC
TCGTACTATGATCCAATAACGCTTATATTATGATAAAATAATACTCGTCC
TGTGATCAAATAACGCTTATATTATGTTCATACTATGGTCATATAACGGG
TATATTATAAAAATGTTCGTATTATGATCACATGTAATAATGTTATTTCA
GGTTTAAGCAAATGAAATCAGAAGCGGATGCAAAGGATGCTGATcatgaa
aacaaaatcaaattgcTCATCACTGAGAATAATAAGTTGTTACAATTCAC
TAAAGTAAGTACATGTTCGACCTGTTGTTTGAGATTGTAAATTTGAAGGT
CGAGAGACTATTCTCTCCACCAGTGCGCTTTATTTTTAATCGGAAGTCAG
TGAATTGGTGACGTGATGATTGccgaaaattaaatttagaaattagaaca
aggcaaattttttgctaaaatttggGATTTTATTTTTGGCAGATGAGaaa
tactttataaaaatcaataaacgggGATGCAGTTCCTNtttagagcaaaa
taaggggccttcactttgacagctgaaaatattcttagagattaataaac
gggggggtcctaataaggtccggggggtttggaaaattttcgaaaaatta
acaagcgggggggccgtttatttggaacctaagagtacatgtTCGGCCTG
TTGTTTGAGATTGTAAATTTGAAGGTCGAGAGACTATTCTCTCCACCAGT
GCGCTTTATTTTTAATCGGAAGTCAGTGAATTGGTGACGTGATGATTGcc
gaaaattaaatttagaaattagaacaaggcaaattttttgctaaaatttg
gGATTTTATTTTTGGCAGATGAGaaatactttataaaaatcaataaacgg
gGATGCAGTTCCTCATAagaccagacccgatcaatcgagcttgtcgaacc
aatcgaacaatcgaactaatcgaactaatcgaactctaTCGATAAGTTAg
attgtttgattggttcgacaagttcgattgattgggTCTGGGTAAGAGAA
TTTACCAATGAGGAGAGAGTGAGAACCTCACTTCAGTCCTCAGTTTAGTA
TTTCGCTGTTATCAAACTAAGGTCAATGGCACCGTTATACATATTGGCAC
AATGAGGATTGGCAATGACGTTATTTGCCACTTATGAAAGACTATTTCAT
GATATGTACCATTGCAATGTTTTCTGACagtacatcacggacccaacaat
TGATTAGTTGTGAGTGACGTAAAATAATCAATAGgtcactttcaaccagt
caGTTGTTAAGTCCGTGgaagatattgcaatggtgcatatcatgaatagt
gtGCTACTGTAGAGAGGACTGGAATAATTCTCCCGCTCGTTCTAACCGTT
CACCAACTTACTTGCTTCAGGGGCAGATGGAGGATGTGAAACTCGAGAAT
GAAGACCATCTCAAGGAGATCGAATCGTTGAAAAAACAAATCGGACACTT
GAAATCTACGGCAGCCGAAAACACATCACGTGACATCAAACGCGAAGATG
GATTGGCAGAAAACAAAGGCAGCCATTTATCGTTAGATTTCGCGGGAAAT
AAATCACTCATGGAGAGACAAGAAGGCGAGGTAGGGTGAATTGAAAATGG
AGCCCTTCTATGGAGCTTTCCTAAAACAAAGCAAGCATGAGATCGCTCTA
AAACACTTAGGGGGAAATCATTTTACTTCTCTTTCCTACTCTTCAGTACG
TTCAGCAGAAAACACGTATCAGCCCTTTGCGGTGCGGTCAGCTTTTGATG
AGAGATTGGTTTACAAGTAAGGAAGGAAGGTAGGCTGGAATGTCTATGTC
ATTTcaactttgtttgattgtttattTGTAGGGGATGGACCAGACGGAAT
TGGAAATCATCGACTCCATCAGCCACCATGTTAGTATCTTTCAACTTCTT
TGTTTTATGATACAGAGCTGAAATATAATCTAGTGGACTTGTATTCAGTC
AAGAAAAGACTCCACTCGGCAATGTTCATGTGCTTTTACTTGACTTAATG
TAATAGTTTACGATTCTGTCACGGAGGTGGTGActttccaatcctttttt
gtttgtttcagtCATCTTCGTCAGTCCCTCAAACACCTCTTTCACCAAGT
GCGACCTCCATActggaaaatattttacaaCACGACTCACCTCAAAGTAA
GTTTAAACCGAGTGTGACCTCTATACTGGAAATTATTTCAAGGCCATTCG
ACTTGGCGTGTGCTTTCTACAAATTTAAGCATGCACGTGTTCGATATATT
GGTTATGCATTGCGATCATTTCAATCGTAGACGTTTCTATTTTACCAGCA
TATTGAgccttcttcaaaaattttgagaatctattgaaaacctttaaaag
tccaaaaaaaaatttttgtccaaaaatacACGTGGATTTTCGCGGAATCG
CTGAAGGTCGAAATTTGTTTCTTTAATACGTATATCATCCTTTTCAGCAC
CCCTGGCTATGAAAGATGAGTTGACACGCTTAAAGTCATCGCTCCAAACC
TCCTTGAAGAAGAATGATCATATGACAGCTGTAAgaaatagttatcggac
agttgcgagtacaatatgagaaatattttacgaattccgagatttttccg
tccAATATTTTCCAAACCTttatattgtacgagcaaatgtctgattttgt
acatgtaaaatacaagatatattgtactatTCTTTTTAACGAATGaaatt
gcagatattttttggatcgccgacaattttcattattttcaaatctaaat
gaaaaaaaaaaagtttatctgGCTATTCACCAACAAATTCCTTTTTGAAG
CCTAAAAGGCTGGTCTTTAAGAATTCTGTCGTTTTTTTCTAGTGTTCTTT
ATACAGTTGTCTcttgaacttctattattcaaacctttctataattcgaa
ctaaatctCTGTTCTCGTCACAGGGAAAACCCCGTgggatatttttttaa
attcaaatcttactgaaattcgaacaaattagaatCCTCGTTCAATTTTG
AATTACCGAGGGCCGACTGTATGTTAGACTTTTCTTAATTCATGCTTTTC
TTTCAGTTATTGCGGGAAAGCGAGGCAAACGCATCACGTCATTACGAGCA
AGCCATTGTCTTGAAAGAAGAAATTCGACGGTAAGTAGACTTTCTTTTAC
AGGGATTTGTCAATATCATCCACTCTAAATTGTCATTCTAACGAGTTATC
AAAATTATTCCTTATCTCAGTAGAATCTTTTGAGCAGTGTTTAAAGAACT
TCTTCTTACCTTAGACTAATTTCTTAGAGAGTATTAAATAAACTACAATA
TCCGCAATGTCGTTCGAAGTCTATTTCCTtccaaaaacaatttaacaTTG
TCACACGGTTTTTCAGGTGATATTCTAAGGACAGAATGTTGATCCTTCAA
CTTGATTTGTGGCAACCCTCTGTATGTTATGTcacaaatttttctcttta
gtTTGGAGCGAAACGAGAAACGTGAACAAGACTTGTTGAACATGGAATAC
CTCAAAAATATTATCGTAAAAGTGAGTAATTATATTGATAAAGGTGGGAT
GGGCGGACAATGGCCAGCTTCTTTGACATGCCTGGTTTCCTACTCGTTTC
TGTGTCGAGTTCTAATGCTAatgtaggctgctggcatccactaacggatt
cgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002919XLOC_002919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005125-exon-sc0000051-1491911889:157878..157907TCONS_00005125-exon-sc0000051-1491911889:157878..157907Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:157878..157907TCONS_00005125-exon-sc0000051-1510915933:157878..157907Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:157878..157907TCONS_00005125-exon-sc0000051-1575043694:157878..157907Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:158088..158171TCONS_00005125-exon-sc0000051-1491911889:158088..158171Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:158088..158171TCONS_00005125-exon-sc0000051-1510915933:158088..158171Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:158088..158171TCONS_00005125-exon-sc0000051-1575043694:158088..158171Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:158620..158703TCONS_00005125-exon-sc0000051-1491911889:158620..158703Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:158620..158703TCONS_00005125-exon-sc0000051-1510915933:158620..158703Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:158620..158703TCONS_00005125-exon-sc0000051-1575043694:158620..158703Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:158977..159072TCONS_00005125-exon-sc0000051-1491911889:158977..159072Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:158977..159072TCONS_00005125-exon-sc0000051-1510915933:158977..159072Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:158977..159072TCONS_00005125-exon-sc0000051-1575043694:158977..159072Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:159276..159514TCONS_00005125-exon-sc0000051-1491911889:159276..159514Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:159276..159514TCONS_00005125-exon-sc0000051-1510915933:159276..159514Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:159276..159514TCONS_00005125-exon-sc0000051-1575043694:159276..159514Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:160066..160852TCONS_00005125-exon-sc0000051-1491911889:160066..160852Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:160066..160852TCONS_00005125-exon-sc0000051-1510915933:160066..160852Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:160066..160852TCONS_00005125-exon-sc0000051-1575043694:160066..160852Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:160905..161942TCONS_00005125-exon-sc0000051-1491911889:160905..161942Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:160905..161942TCONS_00005125-exon-sc0000051-1510915933:160905..161942Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:160905..161942TCONS_00005125-exon-sc0000051-1575043694:160905..161942Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:162257..162637TCONS_00005125-exon-sc0000051-1491911889:162257..162637Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:162257..162637TCONS_00005125-exon-sc0000051-1510915933:162257..162637Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:162257..162637TCONS_00005125-exon-sc0000051-1575043694:162257..162637Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:162913..163042TCONS_00005125-exon-sc0000051-1491911889:162913..163042Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:162913..163042TCONS_00005125-exon-sc0000051-1510915933:162913..163042Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:162913..163042TCONS_00005125-exon-sc0000051-1575043694:162913..163042Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:163426..163652TCONS_00005125-exon-sc0000051-1491911889:163426..163652Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:163426..163652TCONS_00005125-exon-sc0000051-1510915933:163426..163652Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:163426..163652TCONS_00005125-exon-sc0000051-1575043694:163426..163652Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:163867..164075TCONS_00005125-exon-sc0000051-1491911889:163867..164075Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:163867..164075TCONS_00005125-exon-sc0000051-1510915933:163867..164075Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:163867..164075TCONS_00005125-exon-sc0000051-1575043694:163867..164075Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:164675..164851TCONS_00005125-exon-sc0000051-1491911889:164675..164851Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:164675..164851TCONS_00005125-exon-sc0000051-1510915933:164675..164851Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:164675..164851TCONS_00005125-exon-sc0000051-1575043694:164675..164851Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:165429..165531TCONS_00005125-exon-sc0000051-1491911889:165429..165531Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:165429..165531TCONS_00005125-exon-sc0000051-1510915933:165429..165531Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:165429..165531TCONS_00005125-exon-sc0000051-1575043694:165429..165531Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:166648..166857TCONS_00005125-exon-sc0000051-1491911889:166648..166857Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:166648..166857TCONS_00005125-exon-sc0000051-1510915933:166648..166857Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:166648..166857TCONS_00005125-exon-sc0000051-1575043694:166648..166857Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:167109..167156TCONS_00005125-exon-sc0000051-1491911889:167109..167156Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:167109..167156TCONS_00005125-exon-sc0000051-1510915933:167109..167156Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:167109..167156TCONS_00005125-exon-sc0000051-1575043694:167109..167156Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:167339..167423TCONS_00005125-exon-sc0000051-1491911889:167339..167423Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:167339..167423TCONS_00005125-exon-sc0000051-1510915933:167339..167423Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:167339..167423TCONS_00005125-exon-sc0000051-1575043694:167339..167423Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:167725..167807TCONS_00005125-exon-sc0000051-1491911889:167725..167807Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:167725..167807TCONS_00005125-exon-sc0000051-1510915933:167725..167807Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:167725..167807TCONS_00005125-exon-sc0000051-1575043694:167725..167807Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:168334..168407TCONS_00005125-exon-sc0000051-1491911889:168334..168407Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:168334..168407TCONS_00005125-exon-sc0000051-1510915933:168334..168407Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:168334..168407TCONS_00005125-exon-sc0000051-1575043694:168334..168407Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1491911889:168729..168931TCONS_00005125-exon-sc0000051-1491911889:168729..168931Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1510915933:168729..168931TCONS_00005125-exon-sc0000051-1510915933:168729..168931Clytia hemisphaericaexon
TCONS_00005125-exon-sc0000051-1575043694:168729..168931TCONS_00005125-exon-sc0000051-1575043694:168729..168931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:157878..168931 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0431459	2.31789	0.0216417	0.325904	0.261383	0.004859	0.000506141	0.344871	1.64216	2.52368	8.04241e-05	0.000205865	0.0230153	0.171588	6.74301e-05	0.00187412	5.71511e-07	1.43558	0.0178249	2.37947	0.178979	0.155675	4.08992	0.595489	0.0656416	0.000322309	1.64869	0.000287636	1.76154	1.04418e-05
Blast
[Close]
BLAST of TCONS_00005125 vs. Swiss-Prot (Human)
Match: GCC2 (GRIP and coiled-coil domain-containing protein 2 OS=Homo sapiens GN=GCC2 PE=1 SV=4)

HSP 1 Score: 122.865 bits (307), Expect = 7.313e-28
Identity = 155/524 (29.58%), Postives = 263/524 (50.19%), Query Frame = 1 
Query: 2722 LQSAHKETTQMNVMNLEIDDYLKTIENLNQKLQTKDAECEELKK-----------ANEEMASLKKAKQSVDEXXXXXXXXXXXXXXXXXXXXSQANKNEEEHNVSRDQIQ-ELSLA---IEDLKMQVSETVREKEKIQTELQQKLEIQQKSYQTLEVKFNRSHSDMTSSHNALEELKTEYESYKVRAHNVLKQQKENSSNTLVERHDAEIAR--LESVISELR-------NELSTNKDELNVTKDEHEQLEIEFEKQHALQAEFMKEFNEKENRFKHKFKQMKSEADAKDADHENKIKLLITENNKLLQFTKGQMEDVKLENEDHLKEIESLKKQIGHLKSTAA----ENTSRDIKRED----GLAENKGSHLSLDFAGNKSLMERQEGEGMDQTELEXXXXXXXXXXXXVPQTPLSPSATSILENILQHDSPQT---PLAMKDELTR--LKSSLQTSLKKNDHMTALLRESEANASRHYEQAIVLKEEIRRLERNEKREQDLLNMEYLKNIIVKVSNYIDKGG 4182
            L+   K+  Q  +MN+EI DY + ++ LNQKL  K+ + E+L++             EE+ SL+ + Q  +EKN K+K L++K KKE+    + + + E +H + +  ++ EL  +   +E  K+Q++E   EK KI   L+   E  Q++    + +      +  ++      + +E+ESYKVR HNVLKQQK N S +  E   A+  R  LE +I +L+       N L  N  EL   + EH+ L    E+ + +    ++E   KE   + K   ++SE     ++H   +  L ++N  L    + Q+  ++   E+H K +E+L++Q+  +++       E T+R           L E + + L L    +   + R+EGEGM+ T+ E + S              + + T  LE +L  +SP+T   P     E T+  L   L ++ K  DH+  LLRE+EA  +   EQ  +LK EIRRLERN++RE+   N+EYLKN++++   ++  G 
Sbjct: 1145 LELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL----ADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLKQQK-NKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTL---LERHNKM----LQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQ---EEHRKTVETLQQQLSKMEAQLFQLKNEPTTRSPVSSQQSLKNLRERRNTDLPL---LDMHTVTREEGEGMETTDTESVSS--------------ASTYTQSLEQLL--NSPETKLEPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFI-FLKPGS 1633
The following BLAST results are available for this feature:
BLAST of TCONS_00005125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCC27.313e-2829.58GRIP and coiled-coil domain-containing protein 2 O... [more]
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