TCONS_00005120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005120
Unique NameTCONS_00005120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005120 ID=TCONS_00005120|Name=TCONS_00005120|organism=Clytia hemisphaerica|type=transcript|length=547bp
TGAAAAACCCTCTGGGGAGATTTAACAAACATCCAACAACTTCGTTCGTT
AGTGGGGTATTGTACATTACGTACGAAAGCTACTCGACGTacagtgaaga
agaaaaaataatcaaaataaaaacagtttaaCTATTTGTGTCAGTTGGGA
AATATGGGTCTGTTTtgaggaaaaagaagaagaaaaagaagtgaGGGAAT
TTTGAAGGAAAGGTTCCTACGTGCCAAAAAtaccaatttaaaaacaaagc
gAAATTTCGAAATAACTTGGAGAAATACGTTCCAACAAAGGCGGAAAATT
ACTGGGGAACTTGCTTAAATCGATTGTAGTTGAAAAATCAGACATCGTTT
TCTGGTATTATTTCTTTCACTGTCAAGTGAAACTTTCGCatcttcaaaaa
tatattttaatttgaGAGAGAAGCGAAACAACAAGATGGTATCTTTGACA
GAGAAAGAGAAAGAAGCTTTGGGAAAACATATTCGGGATGCTGAAAACTC
TGATTCTGGggtaatttatttttcttatgaatTTTCTCACATTTTAC
Run BLAST on NCBI

transcript from alignment at sc0000050:834926..835472

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005120 ID=TCONS_00005120|Name=TCONS_00005120|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0000050:834926..835472 (Clytia hemisphaerica)
GTAAAATGTGAGAAAattcataagaaaaataaattaccCCAGAATCAGAG
TTTTCAGCATCCCGAATATGTTTTCCCAAAGCTTCTTTCTCTTTCTCTGT
CAAAGATACCATCTTGTTGTTTCGCTTCTCTCtcaaattaaaatatattt
ttgaagatGCGAAAGTTTCACTTGACAGTGAAAGAAATAATACCAGAAAA
CGATGTCTGATTTTTCAACTACAATCGATTTAAGCAAGTTCCCCAGTAAT
TTTCCGCCTTTGTTGGAACGTATTTCTCCAAGTTATTTCGAAATTTcgct
ttgtttttaaattggtaTTTTTGGCACGTAGGAACCTTTCCTTCAAAATT
CCCtcacttctttttcttcttctttttcctcaAAACAGACCCATATTTCC
CAACTGACACAAATAGttaaactgtttttattttgattattttttcttct
tcactgtACGTCGAGTAGCTTTCGTACGTAATGTACAATACCCCACTAAC
GAACGAAGTTGTTGGATGTTTGTTAAATCTCCCCAGAGGGTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002916XLOC_002916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005120-exon-sc0000050-1491911889:834926..835472TCONS_00005120-exon-sc0000050-1491911889:834926..835472Clytia hemisphaericaexon
TCONS_00005120-exon-sc0000050-1510915933:834926..835472TCONS_00005120-exon-sc0000050-1510915933:834926..835472Clytia hemisphaericaexon
TCONS_00005120-exon-sc0000050-1575043694:834926..835472TCONS_00005120-exon-sc0000050-1575043694:834926..835472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:834926..835472 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.104964	0	0.118845	0.437922	0	0	0.674737	1.64237	1.09141	1.48439	1.38245	0.584159	4.01424	3.8999	5.74454	6.06644	2.91545	1.85755	0.334736	0.614954	3.11675	2.88515	0.842445	2.30864	1.46503	3.01733	0.863557	0.671285	0	0.237393
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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