TCONS_00005117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005117
Unique NameTCONS_00005117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005117 ID=TCONS_00005117|Name=TCONS_00005117|organism=Clytia hemisphaerica|type=transcript|length=526bp
GATGTCCTGGAACTCTGTGAAACATGTCAACGGAGTGTTGACATCGATGC
TGGGAAAGTGGACCAATTCTCTGGAAGGAGTCAATGCTTTCTATGGACAT
CCTGGGAGGTTGTATCGTTCAGGGATAACGCCATATTCTCTTAGGTTGTA
GAAAGTTGTTTCAGGTGAAAAGGATTTTCTTTCCGGTCTTTTGACTAGAG
ATTCGTCCAGACATGGTTCGTCAGGTTAGCATGATGAGACGGTTTGATAT
TTGAATTGTATCTCTGGTAAAGAAGTAGGTTCCATGATGTGTCTACTTAA
AGCCGCTGCTTCATCCAGATTTTTCTCAATGCTACCAGGTTGTCGATGAA
ACTGGTTGTCATATTCATTCATTTGGCAACGCATTTCTCGACGAATAGTA
TTCAACTGTTCAGAACCTGTTTCGTGTTGTTGTTCCTCGCGAACCTTTCT
GTTCTCCAGGAGGATTTTATCCAAACGGCTGAGTGTTTGTTCTTCATGCA
CTGACGAGTCTGCCGACAACGAATCT
Run BLAST on NCBI

protein sequence of TCONS_00005117-protein

>TCONS_00005117-protein ID=TCONS_00005117-protein|Name=TCONS_00005117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
DSLSADSSVHEEQTLSRLDKILLENRKVREEQQHETGSEQLNTIRREMRC
QMNEYDNQFHRQPGSIEKNLDEAAALSRHIMEPTSLPEIQFKYQTVSSC
Run BLAST on NCBI

transcript from alignment at sc0000050:804613..805138

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005117 ID=TCONS_00005117|Name=TCONS_00005117|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at sc0000050:804613..805138 (Clytia hemisphaerica)
AGATTCGTTGTCGGCAGACTCGTCAGTGCATGAAGAACAAACACTCAGCC
GTTTGGATAAAATCCTCCTGGAGAACAGAAAGGTTCGCGAGGAACAACAA
CACGAAACAGGTTCTGAACAGTTGAATACTATTCGTCGAGAAATGCGTTG
CCAAATGAATGAATATGACAACCAGTTTCATCGACAACCTGGTAGCATTG
AGAAAAATCTGGATGAAGCAGCGGCTTTAAGTAGACACATCATGGAACCT
ACTTCTTTACCAGAGATACAATTCAAATATCAAACCGTCTCATCATGCTA
ACCTGACGAACCATGTCTGGACGAATCTCTAGTCAAAAGACCGGAAAGAA
AATCCTTTTCACCTGAAACAACTTTCTACAACCTAAGAGAATATGGCGTT
ATCCCTGAACGATACAACCTCCCAGGATGTCCATAGAAAGCATTGACTCC
TTCCAGAGAATTGGTCCACTTTCCCAGCATCGATGTCAACACTCCGTTGA
CATGTTTCACAGAGTTCCAGGACATC

Coding sequence (CDS) from alignment at sc0000050:804613..805138

>TCONS_00005117 ID=TCONS_00005117|Name=TCONS_00005117|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000050:804613..805138 (Clytia hemisphaerica)
GATTCGTTGTCGGCAGACTCGTCAGTGCATGAAGAACAAACACTCAGCCG
TTTGGATAAAATCCTCCTGGAGAACAGAAAGGTTCGCGAGGAACAACAAC
ACGAAACAGGTTCTGAACAGTTGAATACTATTCGTCGAGAAATGCGTTGC
CAAATGAATGAATATGACAACCAGTTTCATCGACAACCTGGTAGCATTGA
GAAAAATCTGGATGAAGCAGCGGCTTTAAGTAGACACATCATGGAACCTA
CTTCTTTACCAGAGATACAATTCAAATATCAAACCGTCTCATCATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002913XLOC_002913Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005117-proteinTCONS_00005117-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005117-exon-sc0000050-1491911889:804613..805138TCONS_00005117-exon-sc0000050-1491911889:804613..805138Clytia hemisphaericaexon
TCONS_00005117-exon-sc0000050-1510915933:804613..805138TCONS_00005117-exon-sc0000050-1510915933:804613..805138Clytia hemisphaericaexon
TCONS_00005117-exon-sc0000050-1575043694:804613..805138TCONS_00005117-exon-sc0000050-1575043694:804613..805138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:804613..805138 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0840158	0	0	0	0	0.0790867	0	0	91.2569	37.6938	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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