TCONS_00005115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005115
Unique NameTCONS_00005115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005115 ID=TCONS_00005115|Name=TCONS_00005115|organism=Clytia hemisphaerica|type=transcript|length=638bp
CTATTCCAATTAACTGATATAACAAATATAGACTGTGTGGaaaataaaat
tcagaattttatCTATCTGGAAACGCTAAATAGTAGAGGATCtgaatttt
cgataaatttggAAAATCGATATACAAGCGATGACGAGGCTCTCCTTGGA
TGTCTTGCCGAAACATATTTTCAAGTGATACGACTCATTTATGACATGGC
TGAATGGAAAAGAGGTGTCAAACTAACGTGTGAAATGATGCCccataaat
ttacagaccagattcgAGAGCCTTTCCAAAATTTAGCCagaattaatttt
tattttgaagatttgcaTATTAGCGAGTACGATTTTTCAGCGTATATCAC
AGATTTGACTCTGGTGGATCTTAAGGAATGTAAAGGAACAGATGCTTGTT
TAAAGTGCTGTTCCCGAGGATATTTTTCATTGAACGGTCATGTTGCAAAA
TCAATTGACACAATCAATGAACACCATCAAGAGGTTGTTGACTGGCTTGA
TCGAATAGCAACCCGAATAAGACGAGAaatcaagcaaaacaaaacatccc
tcattattacgaaaaagaaaaagacaatggAAAAGAAAGAGTCGCTGAAT
CAACTTTTGAAGAATCCTGGCGAGGCGTTAAGAGACTG
Run BLAST on NCBI

protein sequence of TCONS_00005115-protein

>TCONS_00005115-protein ID=TCONS_00005115-protein|Name=TCONS_00005115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
LFQLTDITNIDCVENKIQNFIYLETLNSRGSEFSINLENRYTSDDEALLG
CLAETYFQVIRLIYDMAEWKRGVKLTCEMMPHKFTDQIREPFQNLARINF
YFEDLHISEYDFSAYITDLTLVDLKECKGTDACLKCCSRGYFSLNGHVAK
SIDTINEHHQEVVDWLDRIATRIRREIKQNKTSLIITKKKKTMEKKESLN
QLLKNPGEALRD
Run BLAST on NCBI

transcript from alignment at sc0000050:732103..732740

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005115 ID=TCONS_00005115|Name=TCONS_00005115|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at sc0000050:732103..732740 (Clytia hemisphaerica)
CAGTCTCTTAACGCCTCGCCAGGATTCTTCAAAAGTTGATTCAGCGACTC
TTTCTTTTccattgtctttttctttttcgtaataatgagggatgttttgt
tttgcttgattTCTCGTCTTATTCGGGTTGCTATTCGATCAAGCCAGTCA
ACAACCTCTTGATGGTGTTCATTGATTGTGTCAATTGATTTTGCAACATG
ACCGTTCAATGAAAAATATCCTCGGGAACAGCACTTTAAACAAGCATCTG
TTCCTTTACATTCCTTAAGATCCACCAGAGTCAAATCTGTGATATACGCT
GAAAAATCGTACTCGCTAATAtgcaaatcttcaaaataaaaattaattct
GGCTAAATTTTGGAAAGGCTCTcgaatctggtctgtaaatttatggGGCA
TCATTTCACACGTTAGTTTGACACCTCTTTTCCATTCAGCCATGTCATAA
ATGAGTCGTATCACTTGAAAATATGTTTCGGCAAGACATCCAAGGAGAGC
CTCGTCATCGCTTGTATATCGATTTTccaaatttatcgaaaattcaGATC
CTCTACTATTTAGCGTTTCCAGATAGataaaattctgaattttattttCC
ACACAGTCTATATTTGTTATATCAGTTAATTGGAATAG

Coding sequence (CDS) from alignment at sc0000050:732103..732740

>TCONS_00005115 ID=TCONS_00005115|Name=TCONS_00005115|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000050:732103..732740 (Clytia hemisphaerica)
GTCTCTTAACGCCTCGCCAGGATTCTTCAAAAGTTGATTCAGCGACTCTT
TCTTTTccattgtctttttctttttcgtaataatgagggatgttttgttt
tgcttgattTCTCGTCTTATTCGGGTTGCTATTCGATCAAGCCAGTCAAC
AACCTCTTGATGGTGTTCATTGATTGTGTCAATTGATTTTGCAACATGAC
CGTTCAATGAAAAATATCCTCGGGAACAGCACTTTAAACAAGCATCTGTT
CCTTTACATTCCTTAAGATCCACCAGAGTCAAATCTGTGATATACGCTGA
AAAATCGTACTCGCTAATAtgcaaatcttcaaaataaaaattaattctGG
CTAAATTTTGGAAAGGCTCTcgaatctggtctgtaaatttatggGGCATC
ATTTCACACGTTAGTTTGACACCTCTTTTCCATTCAGCCATGTCATAAAT
GAGTCGTATCACTTGAAAATATGTTTCGGCAAGACATCCAAGGAGAGCCT
CGTCATCGCTTGTATATCGATTTTccaaatttatcgaaaattcaGATCCT
CTACTATTTAGCGTTTCCAGATAGataaaattctgaattttattttCCAC
ACAGTCTATATTTGTTATATCAGTTAATTGGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002911XLOC_002911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005115-exon-sc0000050-1491911889:732103..732740TCONS_00005115-exon-sc0000050-1491911889:732103..732740Clytia hemisphaericaexon
TCONS_00005115-exon-sc0000050-1510915933:732103..732740TCONS_00005115-exon-sc0000050-1510915933:732103..732740Clytia hemisphaericaexon
TCONS_00005115-exon-sc0000050-1575043694:732103..732740TCONS_00005115-exon-sc0000050-1575043694:732103..732740Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005115-proteinTCONS_00005115-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:732103..732740 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0826987	0	0.561814	0.641255	0.111524	0.0881276	1.38219	0.895838	0.48782	1.72641	0.502709	0.495692	0.935005	0.799657	0.751345	1.20946	1.05539	1.84532	0.879106	1.37988	2.23882	1.28702	1.42231	1.89653	1.59822	1.50562	0.113396	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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