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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005109 ID=TCONS_00005109|Name=TCONS_00005109|organism=Clytia hemisphaerica|type=transcript|length=3094bp cagaaaaattgataaaaaaaataaaataaaaaaaggagaATACAAAGtcg agaaactttttttgctggTCCATACACCACACACTCACCAGACGTTGTCA TTATCATCATGTTTGCACAAAAGTTGAAATCCAGTTGCAAATTCATTAGT GTCAGTTTTGGTTTCGTGACTGCTTTTGTGACACATCAATATCAACAAAC GTTCGGTGAAAAGATAGATCAACATGTCAACAAGAACTTGGATGTTCTTC ACCATTGGGTAGAATTGAGATCCAAAATGGCTTACGAGAAAACTGAATCA TTCCTTATAAAGTATTGCCAGTGGCTGTCGAAATCAACTTTGTTTCATAA AATGGATATGACCTCATTGCTTATTTTCTTGGCTGAGAATCAAAACACAA CATTTTTACATGGCATTTGTATTAAATTATTGTCAACTATTGAATTCCCA CAGGACGTGGATATGGAGTATTATCTTAAGAAATGTGATTCCAACACATT GATTGGTTTAGCTAGATCACATGATGTTAACCTGAAATGGTTTTCAAATG AGGATATTTTACCAAGAGAGCTTACTGAGGAAAGTGGGTTTCAATTAAGT CGTGAAATCCAACAACTAATTCACGATATCCAGTCATCTTTAGAGAATGA CGAAGACCCTGATAGCCAACCTCAATGCTCAACATGGCTTTTTCAGAAAG TCATCAACGAGCATTTACCAGATGAGCCAATACCAAATCTGATGAATGAT TTATCTACAGGGCGTGATCACCATTCGTTGAGCCATGAAAAAACAGATGT TCTATCGACCAATATATTGTTTGATTATCTGAAAATCTTACGCCAGTTTA CTGCTAATGATAAGGTTAGTTCCAATCCAGATTTAAGTGCATCTGTTCTT AACGTTGTTAGAGATATCGTTGCTTTTTATGACGATGAAGGCAACCCCGA CCGAAAATCAGTGTTGGAGAAGTGTGGTAATATTGTTGCGAATCTCTCGT GTACTGATGCTAATCGAGAAGCTGTTATCCAGAGAGGATATCTACCGCTA TTTATGAATTGGAAGTCGTCCACGGATAACACGTTGAAGATCGTAGCCGA CCGCGCGCTGACCAACTTGGATTTTCAAACCAGTGTCAAGAAATTGTGTG ATGGTATATATGTTTTGCATCCCAACTGTAGATCAGCAGATGAGGCGATT GTAGATGTTGTATTTGTTCATGGTATACAGGGAAGTCCTTTTCATACGTG GCGTCAAAGACAAGCTTTCGACCAAGCAATGTATACAGACTGCTGGCCTA AAGATTGGTTGCCGGAAGATTATCCGAATATACGAGTCATTGGCGTTCAT TATGAGTCGTTTTTCTCCGATTGGTATTCTTCATGCCCTGTCGATAACGA GAAACGCTCGCTTGAAAATAAAGCAATAGCTATCAAAGAGAAACTAAAAG AATTCGGGGTTGGTGAGAGACCTATCGTTTGGGTAACTCATTCTCTGGGA GGGCTTATTACTAAACGGATGTTATCCTTGTCGAACTCCTGTGAAGACAC GTCCAATTTCCTTTCCTCTACTAAAGGGCTCGTCTTTTACTCCGTTCCTC ACCTTGGCTCGCCATTCGCTACAACGACCGGGCGTGCCCGTTTTGTGTTG TTTCCGTCAAAAGAGGTATCCGAAATTGAAGAGAATGCGGAAGGGTTGAA GAAATTGCATCAAGATTTCTCAGAATTGGCTAGGAAAtttaaaatcgaat gtttagattTTGGTGAATCGAAACCGTATAAATTACCCTACGTCCAATAT GCGCAAGTTATTGTACCGTCAACCTCATCCAATGTTGGTTACGGTCGGTT CATGTTGTTGGATTCAAATCACCAAGATGTGTGTAAACCAGTCAATAAGG TGGATCCAAGGTACTGGGAAGTTTCGGCAATGATAAGAAGGGTGTTACAA GAAAATGAGAAAACTGAAGATAATGAACTCTTCAAGTCGATGAGCACTGT AGAGTAATATGTCACGTGATTGTGAAACTTTTATTCATTTGCTCCAATTC AGGGGTATTATAATAAAGACTAGAGACTAGtatcattttatttcattttt tttgtctcATANTATTATGATAAAGACTAGAGACTAGTATcgttttattt caatattttgtctCATACAGATAATGTAATTTGATACAAAGGCTATATTT TCTTGATTAAAACTTTTTGCGTATTTggtaaaatctgttaaaatcattCG AATTATCCAGCATCCactatttttgatgatttctttAAATCTGATTAAAA GTTTTTCCTTTAATCTTTGAATTGAAACCAGGGTAAATATTCTAGTGTTA CTTGGTCTTGATGAAtaataattgtaaaatttgacaaattgtCTTGAGTC TGAACTAAGCCCCAGAGGTTGATAACATTATTTCTATTCATCATTTAAAA AACTGAGCTTTACACAGACCCTTGAGACGACAGTCTCTCAATCTTGGTCA ACCAACCGTTTTTGATTTGAGTtataaggatatatttttgctgtattttt tgttgttttgtgaaATAAAATTAACTGGGGCAAGAAGGGGTGGGGGTTCa ataatgaataaaaaatgtagaaaatataCCAGGGAGCTTATACGAATTTC GACCTGCAAtaagttttcttttcttttgtgtttCCTCTTTTaacaagctt tatttttgtcAGCTGATCGCTAACTTTTATAGCTTAAAGAGAAGTTCGTA AAAGAAAATCGACACCATATAGAGACTAGATTTTGCTGGAAATATGGTCA GTTTGAAGGAATTTTTAGAACCCTGACTCGTTGAAATTGTTAAATACCAt aagtatattttatatttatatttatattactACATTATTTACAATAATGT ATCCTTAAAATGTtgtaaatcaaatttattttttgttataaataagGTAA CagctttaattttatttaaaaaaatctagtTTACCGGTACGCCTTTGTAA ATAATACCGTTAGTCGCAATATTTATTCTGAACACAAAGAATTCTTATGA ATATGTTACATTACTATGAACGGGGGCTTTTTCATATATGATGG Run BLAST on NCBI protein sequence of TCONS_00005109-protein >TCONS_00005109-protein ID=TCONS_00005109-protein|Name=TCONS_00005109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MFAQKLKSSCKFISVSFGFVTAFVTHQYQQTFGEKIDQHVNKNLDVLHHW VELRSKMAYEKTESFLIKYCQWLSKSTLFHKMDMTSLLIFLAENQNTTFL HGICIKLLSTIEFPQDVDMEYYLKKCDSNTLIGLARSHDVNLKWFSNEDI LPRELTEESGFQLSREIQQLIHDIQSSLENDEDPDSQPQCSTWLFQKVIN EHLPDEPIPNLMNDLSTGRDHHSLSHEKTDVLSTNILFDYLKILRQFTAN DKVSSNPDLSASVLNVVRDIVAFYDDEGNPDRKSVLEKCGNIVANLSCTD ANREAVIQRGYLPLFMNWKSSTDNTLKIVADRALTNLDFQTSVKKLCDGI YVLHPNCRSADEAIVDVVFVHGIQGSPFHTWRQRQAFDQAMYTDCWPKDW LPEDYPNIRVIGVHYESFFSDWYSSCPVDNEKRSLENKAIAIKEKLKEFG VGERPIVWVTHSLGGLITKRMLSLSNSCEDTSNFLSSTKGLVFYSVPHLG SPFATTTGRARFVLFPSKEVSEIEENAEGLKKLHQDFSELARKFKIECLD FGESKPYKLPYVQYAQVIVPSTSSNVGYGRFMLLDSNHQDVCKPVNKVDP RYWEVSAMIRRVLQENEKTEDNELFKSMSTVE Run BLAST on NCBI transcript from alignment at sc0000050:564664..567757 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005109 ID=TCONS_00005109|Name=TCONS_00005109|organism=Clytia hemisphaerica|type=transcript|length=3094bp|location=Sequence derived from alignment at sc0000050:564664..567757 (Clytia hemisphaerica) CCATCATATATGAAAAAGCCCCCGTTCATAGTAATGTAACATATTCATAA
GAATTCTTTGTGTTCAGAATAAATATTGCGACTAACGGTATTATTTACAA
AGGCGTACCGGTAAactagatttttttaaataaaattaaagctGTTACct
tatttataacaaaaaataaatttgatttacaACATTTTAAGGATACATTA
TTGTAAATAATGTagtaatataaatataaatataaaatatacttaTGGTA
TTTAACAATTTCAACGAGTCAGGGTTCTAAAAATTCCTTCAAACTGACCA
TATTTCCAGCAAAATCTAGTCTCTATATGGTGTCGATTTTCTTTTACGAA
CTTCTCTTTAAGCTATAAAAGTTAGCGATCAGCTgacaaaaataaagctt
gttAAAAGAGGaaacacaaaagaaaagaaaacttaTTGCAGGTCGAAATT
CGTATAAGCTCCCTGGtatattttctacattttttattcattattGAACC
CCCACCCCTTCTTGCCCCAGTTAATTTTATttcacaaaacaacaaaaaat
acagcaaaaatatatccttataACTCAAATCAAAAACGGTTGGTTGACCA
AGATTGAGAGACTGTCGTCTCAAGGGTCTGTGTAAAGCTCAGTTTTTTAA
ATGATGAATAGAAATAATGTTATCAACCTCTGGGGCTTAGTTCAGACTCA
AGacaatttgtcaaattttacaattattaTTCATCAAGACCAAGTAACAC
TAGAATATTTACCCTGGTTTCAATTCAAAGATTAAAGGAAAAACTTTTAA
TCAGATTTaaagaaatcatcaaaaatagtGGATGCTGGATAATTCGaatg
attttaacagattttaccAAATACGCAAAAAGTTTTAATCAAGAAAATAT
AGCCTTTGTATCAAATTACATTATCTGTATGagacaaaatattgaaataa
aacgATACTAGTCTCTAGTCTTTATCATAATANTATgagacaaaaaaaat
gaaataaaatgataCTAGTCTCTAGTCTTTATTATAATACCCCTGAATTG
GAGCAAATGAATAAAAGTTTCACAATCACGTGACATATTACTCTACAGTG
CTCATCGACTTGAAGAGTTCATTATCTTCAGTTTTCTCATTTTCTTGTAA
CACCCTTCTTATCATTGCCGAAACTTCCCAGTACCTTGGATCCACCTTAT
TGACTGGTTTACACACATCTTGGTGATTTGAATCCAACAACATGAACCGA
CCGTAACCAACATTGGATGAGGTTGACGGTACAATAACTTGCGCATATTG
GACGTAGGGTAATTTATACGGTTTCGATTCACCAAaatctaaacattcga
ttttaaaTTTCCTAGCCAATTCTGAGAAATCTTGATGCAATTTCTTCAAC
CCTTCCGCATTCTCTTCAATTTCGGATACCTCTTTTGACGGAAACAACAC
AAAACGGGCACGCCCGGTCGTTGTAGCGAATGGCGAGCCAAGGTGAGGAA
CGGAGTAAAAGACGAGCCCTTTAGTAGAGGAAAGGAAATTGGACGTGTCT
TCACAGGAGTTCGACAAGGATAACATCCGTTTAGTAATAAGCCCTCCCAG
AGAATGAGTTACCCAAACGATAGGTCTCTCACCAACCCCGAATTCTTTTA
GTTTCTCTTTGATAGCTATTGCTTTATTTTCAAGCGAGCGTTTCTCGTTA
TCGACAGGGCATGAAGAATACCAATCGGAGAAAAACGACTCATAATGAAC
GCCAATGACTCGTATATTCGGATAATCTTCCGGCAACCAATCTTTAGGCC
AGCAGTCTGTATACATTGCTTGGTCGAAAGCTTGTCTTTGACGCCACGTA
TGAAAAGGACTTCCCTGTATACCATGAACAAATACAACATCTACAATCGC
CTCATCTGCTGATCTACAGTTGGGATGCAAAACATATATACCATCACACA
ATTTCTTGACACTGGTTTGAAAATCCAAGTTGGTCAGCGCGCGGTCGGCT
ACGATCTTCAACGTGTTATCCGTGGACGACTTCCAATTCATAAATAGCGG
TAGATATCCTCTCTGGATAACAGCTTCTCGATTAGCATCAGTACACGAGA
GATTCGCAACAATATTACCACACTTCTCCAACACTGATTTTCGGTCGGGG
TTGCCTTCATCGTCATAAAAAGCAACGATATCTCTAACAACGTTAAGAAC
AGATGCACTTAAATCTGGATTGGAACTAACCTTATCATTAGCAGTAAACT
GGCGTAAGATTTTCAGATAATCAAACAATATATTGGTCGATAGAACATCT
GTTTTTTCATGGCTCAACGAATGGTGATCACGCCCTGTAGATAAATCATT
CATCAGATTTGGTATTGGCTCATCTGGTAAATGCTCGTTGATGACTTTCT
GAAAAAGCCATGTTGAGCATTGAGGTTGGCTATCAGGGTCTTCGTCATTC
TCTAAAGATGACTGGATATCGTGAATTAGTTGTTGGATTTCACGACTTAA
TTGAAACCCACTTTCCTCAGTAAGCTCTCTTGGTAAAATATCCTCATTTG
AAAACCATTTCAGGTTAACATCATGTGATCTAGCTAAACCAATCAATGTG
TTGGAATCACATTTCTTAAGATAATACTCCATATCCACGTCCTGTGGGAA
TTCAATAGTTGACAATAATTTAATACAAATGCCATGTAAAAATGTTGTGT
TTTGATTCTCAGCCAAGAAAATAAGCAATGAGGTCATATCCATTTTATGA
AACAAAGTTGATTTCGACAGCCACTGGCAATACTTTATAAGGAATGATTC
AGTTTTCTCGTAAGCCATTTTGGATCTCAATTCTACCCAATGGTGAAGAA
CATCCAAGTTCTTGTTGACATGTTGATCTATCTTTTCACCGAACGTTTGT
TGATATTGATGTGTCACAAAAGCAGTCACGAAACCAAAACTGACACTAAT
GAATTTGCAACTGGATTTCAACTTTTGTGCAAACATGATGATAATGACAA
CGTCTGGTGAGTGTGTGGTGTATGGAccagcaaaaaaagtttctcgaCTT
TGTATtctcctttttttattttattttttttatcaatttttctg Coding sequence (CDS) from alignment at sc0000050:564664..567757 >TCONS_00005109 ID=TCONS_00005109|Name=TCONS_00005109|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at sc0000050:564664..567757 (Clytia hemisphaerica) TTACTCTACAGTGCTCATCGACTTGAAGAGTTCATTATCTTCAGTTTTCT CATTTTCTTGTAACACCCTTCTTATCATTGCCGAAACTTCCCAGTACCTT GGATCCACCTTATTGACTGGTTTACACACATCTTGGTGATTTGAATCCAA CAACATGAACCGACCGTAACCAACATTGGATGAGGTTGACGGTACAATAA CTTGCGCATATTGGACGTAGGGTAATTTATACGGTTTCGATTCACCAAaa tctaaacattcgattttaaaTTTCCTAGCCAATTCTGAGAAATCTTGATG CAATTTCTTCAACCCTTCCGCATTCTCTTCAATTTCGGATACCTCTTTTG ACGGAAACAACACAAAACGGGCACGCCCGGTCGTTGTAGCGAATGGCGAG CCAAGGTGAGGAACGGAGTAAAAGACGAGCCCTTTAGTAGAGGAAAGGAA ATTGGACGTGTCTTCACAGGAGTTCGACAAGGATAACATCCGTTTAGTAA TAAGCCCTCCCAGAGAATGAGTTACCCAAACGATAGGTCTCTCACCAACC CCGAATTCTTTTAGTTTCTCTTTGATAGCTATTGCTTTATTTTCAAGCGA GCGTTTCTCGTTATCGACAGGGCATGAAGAATACCAATCGGAGAAAAACG ACTCATAATGAACGCCAATGACTCGTATATTCGGATAATCTTCCGGCAAC CAATCTTTAGGCCAGCAGTCTGTATACATTGCTTGGTCGAAAGCTTGTCT TTGACGCCACGTATGAAAAGGACTTCCCTGTATACCATGAACAAATACAA CATCTACAATCGCCTCATCTGCTGATCTACAGTTGGGATGCAAAACATAT ATACCATCACACAATTTCTTGACACTGGTTTGAAAATCCAAGTTGGTCAG CGCGCGGTCGGCTACGATCTTCAACGTGTTATCCGTGGACGACTTCCAAT TCATAAATAGCGGTAGATATCCTCTCTGGATAACAGCTTCTCGATTAGCA TCAGTACACGAGAGATTCGCAACAATATTACCACACTTCTCCAACACTGA TTTTCGGTCGGGGTTGCCTTCATCGTCATAAAAAGCAACGATATCTCTAA CAACGTTAAGAACAGATGCACTTAAATCTGGATTGGAACTAACCTTATCA TTAGCAGTAAACTGGCGTAAGATTTTCAGATAATCAAACAATATATTGGT CGATAGAACATCTGTTTTTTCATGGCTCAACGAATGGTGATCACGCCCTG TAGATAAATCATTCATCAGATTTGGTATTGGCTCATCTGGTAAATGCTCG TTGATGACTTTCTGAAAAAGCCATGTTGAGCATTGAGGTTGGCTATCAGG GTCTTCGTCATTCTCTAAAGATGACTGGATATCGTGAATTAGTTGTTGGA TTTCACGACTTAATTGAAACCCACTTTCCTCAGTAAGCTCTCTTGGTAAA ATATCCTCATTTGAAAACCATTTCAGGTTAACATCATGTGATCTAGCTAA ACCAATCAATGTGTTGGAATCACATTTCTTAAGATAATACTCCATATCCA CGTCCTGTGGGAATTCAATAGTTGACAATAATTTAATACAAATGCCATGT AAAAATGTTGTGTTTTGATTCTCAGCCAAGAAAATAAGCAATGAGGTCAT ATCCATTTTATGAAACAAAGTTGATTTCGACAGCCACTGGCAATACTTTA TAAGGAATGATTCAGTTTTCTCGTAAGCCATTTTGGATCTCAATTCTACC CAATGGTGAAGAACATCCAAGTTCTTGTTGACATGTTGATCTATCTTTTC ACCGAACGTTTGTTGATATTGATGTGTCACAAAAGCAGTCACGAAACCAA AACTGACACTAATGAATTTGCAACTGGATTTCAACTTTTGTGCAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005109-exon-sc0000050-1491911889:564664..567757 | TCONS_00005109-exon-sc0000050-1491911889:564664..567757 | Clytia hemisphaerica | exon |
TCONS_00005109-exon-sc0000050-1510915933:564664..567757 | TCONS_00005109-exon-sc0000050-1510915933:564664..567757 | Clytia hemisphaerica | exon |
TCONS_00005109-exon-sc0000050-1575043694:564664..567757 | TCONS_00005109-exon-sc0000050-1575043694:564664..567757 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000050 | supercontig | sc0000050:564664..567757 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005488 | binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005488 |
binding |
Blast
BLAST of TCONS_00005109 vs. Swiss-Prot (Human)
Match: SRAC1 (Protein SERAC1 OS=Homo sapiens GN=SERAC1 PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 1.671e-65 Identity = 119/335 (35.52%), Postives = 195/335 (58.21%), Query Frame = 1
Query: 979 NIVANLSCTDANREAVIQRGYLPLFMNWKSSTDNTLKIVADRALTNLDFQTSVKKLCDGIYVLHPNCRSADEAIVDVVFVHGIQGSPFHTWRQR---QAF------DQAMYTDCWPKDWLPEDYPNIRVIGVHYESFFSDWYSSCPVDNEKRSLENKAIAIKEKLKEFGVGERPIVWVTHSLGGLITKRMLSLSNSCEDTSNFLSSTKGLVFYSVPHLGSPFATTTGRARFVLFPSKEVSEIEENAEGLKKLHQDFSELARKFKIECLDFGESKPYKLPYVQYAQVIVPSTSSNVGYGRFMLLDSNHQDVCKPVNKVDPRYWEVSAMIRRVLQEN 1956
++ N++ + ++++ G++ + S A R L NLD +T +K DG+YVLHP R++ DV+F+HG+ G+ F TWRQ+ QA D+ YT CWPK WL +D P +R+I V Y++ SDW + CP+ E++S+ ++ + KL+ GVG+RP+VW++HS+GGL+ K+ML +++ + S +++T+G++FYSVPH GS A + R++LFPS EV E+ +++ LK L DF E A+ + L+F E+ P + + V VP S+++G G + +D NH ++CKP K Y IR L ++
Sbjct: 320 RVIGNMALNEHLHSSIVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKADVLFIHGLMGAAFKTWRQQDSEQAVIEKPMEDEDRYTTCWPKTWLAKDCPALRIISVEYDTSLSDWRARCPM--ERKSIAFRSNELLRKLRAAGVGDRPVVWISHSMGGLLVKKMLLEASTKPEMSTVINNTRGIIFYSVPHHGSRLAEYSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLNFVETLPTYIGSMIKLHV-VPVESADLGIGDLIPVDVNHLNICKPKKKDAFLYQRTLQFIREALAKD 651
The following BLAST results are available for this feature:
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