TCONS_00005107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005107
Unique NameTCONS_00005107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005107 ID=TCONS_00005107|Name=TCONS_00005107|organism=Clytia hemisphaerica|type=transcript|length=1168bp
TTTTACCTAACACAAGGCCTGACATATCTTTTGATTGTGAATATCTGACT
CCCTTTTACATGACTTTTGAATAAGCTGAGAACTTCATAATCAGCGACAA
AACTGGTAATGACATCGTTGTAACTCCAAACACCATGAACAAACtagaaa
acattttcccaaGAGGTGTGGTAGGAGATATATCTCCGTATCCGAGAGTC
AGAAACGTTTGTACGCCCCACCACATACTATCCGGGACGCTAATAAAGTG
TGTATCCGGAGCATCTTTCTCCAGGAAGTATAATACACTTGCTCCGAACA
CGACAATTATGAATAAACATACAAAGAACAGTTGTAAGTCTTTCAAACTA
TCTTGAAAAATGATCATAACTGCTTTAAGGCGTCTGGAACATTTGACCAA
TCGAAATATTCGTAGAGCTCTAAAGAATCTAAAGAATTGTAAGATTTCTA
AATATTTGTTATCTGTTTGGTGGTTGATATATAAATACGGTGGTATGCCG
AATAAATCAATCCAATTTAAAGATGTAAATAGAAACCGTCTCCAATTTGG
CGTACAAAAAGCACGTAGTGTAAATTCTAATAGAAACCACCCTGATAAAA
TTATTTCCATCATTAACCAagggtttttatcgattttgttGGTTTCTGTT
CCTGCGATTCCAGGGATGGTTTCTACACAGTTGATTACAATTGAAACGGT
AATCGCTGCGATTTGGAAGATAGTCATTTTCATTGCCAGGCAAGAGGAGT
AAGGGTTCTCGAAAATATTCCATATGCGTAGCCTTCTTGTTGAGTTATCA
TATTTCGTTGTGAATGATATATTTCTTAGACTGTGTACCAACTCTCTTCC
CTCATTGGTTCTCATTGTTGCCATAGCTACCTCGGGTAAACAAAAGAACT
CACATTCTTTCTCGAAGCAATCCACGCTGACGTTTTGAGGGCGCGACAAA
GTACCATTTGATTGGTAGAAAaataaaatagcttcaaaagcATGGTGGTT
TCTATTGAAAAAGTATTGGTTTAATTTGTGGCAATAATATTTGTTTCGTG
ACGTGGCACTACCTAATAACGTCTTCGGAAAACGTTGGATTGTTGAAACG
TACGTTTCGTAAGTTTGACCACTGACATTGAATCGGATTCGTTCTTTTGT
GTCCATCCTTTGTTGTTT
Run BLAST on NCBI

protein sequence of TCONS_00005107-protein

>TCONS_00005107-protein ID=TCONS_00005107-protein|Name=TCONS_00005107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
KQQRMDTKERIRFNVSGQTYETYVSTIQRFPKTLLGSATSRNKYYCHKLN
QYFFNRNHHAFEAILFFYQSNGTLSRPQNVSVDCFEKECEFFCLPEVAMA
TMRTNEGRELVHSLRNISFTTKYDNSTRRLRIWNIFENPYSSCLAMKMTI
FQIAAITVSIVINCVETIPGIAGTETNKIDKNPWLMMEIILSGWFLLEFT
LRAFCTPNWRRFLFTSLNWIDLFGIPPYLYINHQTDNKYLEILQFFRFFR
ALRIFRLVKCSRRLKAVMIIFQDSLKDLQLFFVCLFIIVVFGASVLYFLE
KDAPDTHFISVPDSMWWGVQTFLTLGYGDISPTTPLGKMFSSLFMVFGVT
TMSLPVLSLIMKFSAYSKVM
Run BLAST on NCBI

transcript from alignment at sc0000050:515758..516925

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005107 ID=TCONS_00005107|Name=TCONS_00005107|organism=Clytia hemisphaerica|type=transcript|length=1168bp|location=Sequence derived from alignment at sc0000050:515758..516925 (Clytia hemisphaerica)
AAACAACAAAGGATGGACACAAAAGAACGAATCCGATTCAATGTCAGTGG
TCAAACTTACGAAACGTACGTTTCAACAATCCAACGTTTTCCGAAGACGT
TATTAGGTAGTGCCACGTCACGAAACAAATATTATTGCCACAAATTAAAC
CAATACTTTTTCAATAGAAACCACCATgcttttgaagctattttattTTT
CTACCAATCAAATGGTACTTTGTCGCGCCCTCAAAACGTCAGCGTGGATT
GCTTCGAGAAAGAATGTGAGTTCTTTTGTTTACCCGAGGTAGCTATGGCA
ACAATGAGAACCAATGAGGGAAGAGAGTTGGTACACAGTCTAAGAAATAT
ATCATTCACAACGAAATATGATAACTCAACAAGAAGGCTACGCATATGGA
ATATTTTCGAGAACCCTTACTCCTCTTGCCTGGCAATGAAAATGACTATC
TTCCAAATCGCAGCGATTACCGTTTCAATTGTAATCAACTGTGTAGAAAC
CATCCCTGGAATCGCAGGAACAGAAACCaacaaaatcgataaaaaccctT
GGTTAATGATGGAAATAATTTTATCAGGGTGGTTTCTATTAGAATTTACA
CTACGTGCTTTTTGTACGCCAAATTGGAGACGGTTTCTATTTACATCTTT
AAATTGGATTGATTTATTCGGCATACCACCGTATTTATATATCAACCACC
AAACAGATAACAAATATTTAGAAATCTTACAATTCTTTAGATTCTTTAGA
GCTCTACGAATATTTCGATTGGTCAAATGTTCCAGACGCCTTAAAGCAGT
TATGATCATTTTTCAAGATAGTTTGAAAGACTTACAACTGTTCTTTGTAT
GTTTATTCATAATTGTCGTGTTCGGAGCAAGTGTATTATACTTCCTGGAG
AAAGATGCTCCGGATACACACTTTATTAGCGTCCCGGATAGTATGTGGTG
GGGCGTACAAACGTTTCTGACTCTCGGATACGGAGATATATCTCCTACCA
CACCTCttgggaaaatgttttctaGTTTGTTCATGGTGTTTGGAGTTACA
ACGATGTCATTACCAGTTTTGTCGCTGATTATGAAGTTCTCAGCTTATTC
AAAAGTCATGTAAAAGGGAGTCAGATATTCACAATCAAAAGATATGTCAG
GCCTTGTGTTAGGTAAAA

Coding sequence (CDS) from alignment at sc0000050:515758..516925

>TCONS_00005107 ID=TCONS_00005107|Name=TCONS_00005107|organism=Clytia hemisphaerica|type=CDS|length=1113bp|location=Sequence derived from alignment at sc0000050:515758..516925 (Clytia hemisphaerica)
AAACAACAAAGGATGGACACAAAAGAACGAATCCGATTCAATGTCAGTGG
TCAAACTTACGAAACGTACGTTTCAACAATCCAACGTTTTCCGAAGACGT
TATTAGGTAGTGCCACGTCACGAAACAAATATTATTGCCACAAATTAAAC
CAATACTTTTTCAATAGAAACCACCATgcttttgaagctattttattTTT
CTACCAATCAAATGGTACTTTGTCGCGCCCTCAAAACGTCAGCGTGGATT
GCTTCGAGAAAGAATGTGAGTTCTTTTGTTTACCCGAGGTAGCTATGGCA
ACAATGAGAACCAATGAGGGAAGAGAGTTGGTACACAGTCTAAGAAATAT
ATCATTCACAACGAAATATGATAACTCAACAAGAAGGCTACGCATATGGA
ATATTTTCGAGAACCCTTACTCCTCTTGCCTGGCAATGAAAATGACTATC
TTCCAAATCGCAGCGATTACCGTTTCAATTGTAATCAACTGTGTAGAAAC
CATCCCTGGAATCGCAGGAACAGAAACCaacaaaatcgataaaaaccctT
GGTTAATGATGGAAATAATTTTATCAGGGTGGTTTCTATTAGAATTTACA
CTACGTGCTTTTTGTACGCCAAATTGGAGACGGTTTCTATTTACATCTTT
AAATTGGATTGATTTATTCGGCATACCACCGTATTTATATATCAACCACC
AAACAGATAACAAATATTTAGAAATCTTACAATTCTTTAGATTCTTTAGA
GCTCTACGAATATTTCGATTGGTCAAATGTTCCAGACGCCTTAAAGCAGT
TATGATCATTTTTCAAGATAGTTTGAAAGACTTACAACTGTTCTTTGTAT
GTTTATTCATAATTGTCGTGTTCGGAGCAAGTGTATTATACTTCCTGGAG
AAAGATGCTCCGGATACACACTTTATTAGCGTCCCGGATAGTATGTGGTG
GGGCGTACAAACGTTTCTGACTCTCGGATACGGAGATATATCTCCTACCA
CACCTCttgggaaaatgttttctaGTTTGTTCATGGTGTTTGGAGTTACA
ACGATGTCATTACCAGTTTTGTCGCTGATTATGAAGTTCTCAGCTTATTC
AAAAGTCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002903XLOC_002903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005107-exon-sc0000050-1491911889:515758..516925TCONS_00005107-exon-sc0000050-1491911889:515758..516925Clytia hemisphaericaexon
TCONS_00005107-exon-sc0000050-1510915933:515758..516925TCONS_00005107-exon-sc0000050-1510915933:515758..516925Clytia hemisphaericaexon
TCONS_00005107-exon-sc0000050-1575043694:515758..516925TCONS_00005107-exon-sc0000050-1575043694:515758..516925Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005107-proteinTCONS_00005107-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:515758..516925 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0951246	0.311691	0.155873	0.463377	0	0.197105	0.467474	0.408822	0.0630201	0	0.833149	1.16707	0.629216	0.534974	0.929978	0.314038	0.254503	0.154254	0.198597	0.177243	0.15218	0.162411	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
Blast
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BLAST of TCONS_00005107 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 5.640e-57
Identity = 134/399 (33.58%), Postives = 209/399 (52.38%), Query Frame = -1 
Query:   35 ERIRFNVSGQTYETYVSTIQRFPKTLLGSATSRNKYYCHKLNQYFFNRNHHAFEAILFFYQSNGTLSRPQNVSVDCFEKECEFFCLPEVAMATMRTNEG--RELVHSLRNISFTTKYDNSTRRLRIWNIFENPYSSCLAMKMTIFQIAAITVSIVINCVETIPGIAGTE-----TNKIDK-----------NPWLMMEIILSGWFLLEFTLRAFCTPNWRRFLFTSLNWIDLFGIPPYLY-----INHQTDNKYLEIXXXXXXXXXXXXXXL---VKCSRRLKAVMIIFQD---SLKDLQXXXXXXXXXXXFGASVLYFLEKDAPDTHFISVPDSMWWGVQTFLTLGYGDISPTTPLGKMFSSLFMVFGVTTMSLPVLSLIMKFSAYSKVM*KGVRYSQ 1144
            ER+  N+SG  +ET + T+ +FP TLLG+   R +Y+    N+YFF+RN  +F+AIL++YQS G L RP NV +D F +E +F+ L E AM   R +EG  +E    L    +         + ++W +FE P SS  A  + I  +  I +SIVI C+ET+P +   +      ++ID            +P+ ++E +   WF  E  +R F  P+   F    +N+ID+  I PY       I  Q  N+  E        R +R+ R+    K SR  K + I+ Q    S+++L L    LFI V+  +S +YF E +  ++HF S+PD+ WW V +  T+GYGD+ P T  GK+  SL  + GV T++LPV  ++  F+ +     +G   +Q
Sbjct:   37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEY---------QRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQ 426
The following BLAST results are available for this feature:
BLAST of TCONS_00005107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA15.640e-5733.58Potassium voltage-gated channel subfamily A member... [more]
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