TCONS_00005104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005104
Unique NameTCONS_00005104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005104 ID=TCONS_00005104|Name=TCONS_00005104|organism=Clytia hemisphaerica|type=transcript|length=531bp
aaaaaacttttttttctttatttcctaCCCTTGTAAAAACTGCTTCTAAG
TTTTGCAGTTGTTTTACCAATTCTCTACTCGTATACCTTTTAGAGAATCT
TTGGAAGGTGAAGCTTATACcccttaaaaaagcctttggGACTTGAGTTG
TTCTGTACACGCTTGTTTTTTAAGAACGAATAAATTTTGGCTGATCCTGA
GattattcttaaatttctaTTGTCCCAAACAATATAGAACTTTTGTTCTG
AGGACCTAGATTTGAATCTGGTGTTCTCtcatatatttgtttatatgaat
aaaaaagcgtgtaactaCTTTTTAAACTTGTTGTTACCATCCTTTTAACC
CCGTGTAATTCTCTCATGAAattgaatttaatgaaaatgattCTTCCTTT
AAATCTATGATATAATTTCTATCTAAAActatattgggcttttccagaaa
aaattcgttcatggggggtggaggatatattattttttctgtgatctacc
cctggacatttcgatttttcaccccctggac
Run BLAST on NCBI

transcript from alignment at sc0000050:468678..469208

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005104 ID=TCONS_00005104|Name=TCONS_00005104|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0000050:468678..469208 (Clytia hemisphaerica)
gtccagggggtgaaaaatcgaaatgtccaggggtagatcacagaaaaaat
aatatatcctccaccccccatgaacgaattttttctggaaaagcccaata
tagTTTTAGATAGAAATTATATCATAGATTTAAAGGAAGaatcattttca
ttaaattcaatTTCATGAGAGAATTACACGGGGTTAAAAGGATGGTAACA
ACAAGTTTAAAAAGtagttacacgcttttttattcatataaacaaatata
tgaGAGAACACCAGATTCAAATCTAGGTCCTCAGAACAAAAGTTCTATAT
TGTTTGGGACAAtagaaatttaagaataatCTCAGGATCAGCCAAAATTT
ATTCGTTCTTAAAAAACAAGCGTGTACAGAACAACTCAAGTCccaaaggc
ttttttaagggGTATAAGCTTCACCTTCCAAAGATTCTCTAAAAGGTATA
CGAGTAGAGAATTGGTAAAACAACTGCAAAACTTAGAAGCAGTTTTTACA
AGGGtaggaaataaagaaaaaaaagtttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002900XLOC_002900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005104-exon-sc0000050-1491911889:468678..469208TCONS_00005104-exon-sc0000050-1491911889:468678..469208Clytia hemisphaericaexon
TCONS_00005104-exon-sc0000050-1510915933:468678..469208TCONS_00005104-exon-sc0000050-1510915933:468678..469208Clytia hemisphaericaexon
TCONS_00005104-exon-sc0000050-1575043694:468678..469208TCONS_00005104-exon-sc0000050-1575043694:468678..469208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:468678..469208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38456	0	0.316149	1.18434	0.391891	0.122497	0.796178	1.31877	0.128081	0.248385	0	0.082684	1.53296	0.280764	0.250665	0.101868	0	0.582094	0.905519	1.32284	1.21663	1.59927	0.515436	0.388364	0.275638	0.151347	0	0.18922	0.694736	0.420993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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