TCONS_00005101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005101
Unique NameTCONS_00005101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005101 ID=TCONS_00005101|Name=TCONS_00005101|organism=Clytia hemisphaerica|type=transcript|length=170bp
atgacataaatttcacgtGGAAAAATTTCCTTTACGTAATATATACTCTT
CGGATACTCTTTGGTCTTTGTCTGCAAACATAGTCCTGCAGTGTGCCTTT
TTTATTGAGCAAcgcccttttttataagaacaattttacaagaacacgag
gctgaaaattaggccaaaac
Run BLAST on NCBI

transcript from alignment at sc0000050:400664..400833

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005101 ID=TCONS_00005101|Name=TCONS_00005101|organism=Clytia hemisphaerica|type=transcript|length=170bp|location=Sequence derived from alignment at sc0000050:400664..400833 (Clytia hemisphaerica)
gttttggcctaattttcagcctcgtgttcttgtaaaattgttcttataaa
aaagggcgTTGCTCAATAAAAAAGGCACACTGCAGGACTATGTTTGCAGA
CAAAGACCAAAGAGTATCCGAAGAGTATATATTACGTAAAGGAAATTTTT
CCacgtgaaatttatgtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002897XLOC_002897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005101-exon-sc0000050-1491911889:400664..400833TCONS_00005101-exon-sc0000050-1491911889:400664..400833Clytia hemisphaericaexon
TCONS_00005101-exon-sc0000050-1510915933:400664..400833TCONS_00005101-exon-sc0000050-1510915933:400664..400833Clytia hemisphaericaexon
TCONS_00005101-exon-sc0000050-1575043694:400664..400833TCONS_00005101-exon-sc0000050-1575043694:400664..400833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:400664..400833 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top